Wall clock time and date at job start Mon Mar 30 2020 06:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 H 1.09000 * 109.47175 * 54.99354 * 3 2 1 5 5 C 1.52996 * 109.47350 * 174.99554 * 3 2 1 6 6 N 1.46906 * 109.46907 * 294.99551 * 3 2 1 7 7 C 1.46961 * 110.99734 * 298.80250 * 6 3 2 8 8 C 1.53049 * 109.36292 * 176.81247 * 7 6 3 9 9 N 1.46955 * 109.36716 * 58.39846 * 8 7 6 10 10 C 1.46896 * 111.00246 * 176.81294 * 9 8 7 11 11 H 1.09004 * 109.47327 * 178.79919 * 10 9 8 12 12 C 1.50703 * 109.47381 * 58.80079 * 10 9 8 13 13 H 1.07996 * 119.99595 * 359.97438 * 12 10 9 14 14 C 1.37869 * 120.00174 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00228 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99934 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47498 * 119.99613 * 16 14 12 19 19 H 1.48509 * 109.46862 * 239.99343 * 16 14 12 20 20 C 1.52999 * 109.47119 * 298.79930 * 10 9 8 21 21 C 1.52995 * 109.47156 * 295.00074 * 20 10 9 22 22 C 1.46961 * 110.88206 * 300.68030 * 9 8 7 23 23 C 1.46952 * 110.99889 * 175.00091 * 6 3 2 24 24 H 1.08998 * 109.47498 * 300.00552 * 1 2 3 25 25 H 1.09005 * 109.46330 * 60.00839 * 1 2 3 26 26 H 1.09006 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47498 * 239.99447 * 2 1 3 28 28 H 1.09006 * 109.46813 * 119.99376 * 2 1 3 29 29 H 1.08997 * 109.47474 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.46922 * 300.00179 * 5 3 2 31 31 H 1.09006 * 109.46822 * 59.99467 * 5 3 2 32 32 H 1.09003 * 109.48904 * 296.77641 * 7 6 3 33 33 H 1.09002 * 109.49205 * 56.84173 * 7 6 3 34 34 H 1.09008 * 109.48964 * 298.43140 * 8 7 6 35 35 H 1.09002 * 109.50883 * 178.37660 * 8 7 6 36 36 H 0.97000 * 120.00230 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47240 * 54.99845 * 20 10 9 38 38 H 1.09000 * 109.47270 * 175.00215 * 20 10 9 39 39 H 1.09002 * 109.47321 * 299.99740 * 21 20 10 40 40 H 1.09001 * 109.47638 * 59.99753 * 21 20 10 41 41 H 1.09006 * 109.47567 * 179.97438 * 21 20 10 42 42 H 1.09003 * 109.48904 * 299.35325 * 22 9 8 43 43 H 1.08997 * 109.51213 * 179.29611 * 22 9 8 44 44 H 1.08999 * 109.49234 * 303.15264 * 23 6 3 45 45 H 1.09000 * 109.49101 * 63.20355 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 1.6515 2.0992 -1.2553 7 6 2.2441 1.4148 -2.4130 8 6 1.7526 2.0790 -3.7013 9 7 2.1221 3.5012 -3.6880 10 6 1.7336 4.1579 -4.9433 11 1 1.9994 5.2141 -4.8983 12 6 0.2458 4.0224 -5.1416 13 1 -0.3512 3.5003 -4.4087 14 6 -0.3528 4.5641 -6.2592 15 7 0.3743 5.1994 -7.1520 16 14 -2.1971 4.3967 -6.5046 17 1 -2.7817 3.6443 -5.3657 18 1 -2.8118 5.7467 -6.5742 19 1 -2.4638 3.6656 -7.7695 20 6 2.4663 3.4970 -6.1126 21 6 3.9703 3.7423 -5.9762 22 6 1.5296 4.1856 -2.5304 23 6 2.0211 3.5214 -1.2420 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9282 2.4719 0.1254 30 1 3.8531 0.9570 1.0572 31 1 3.9995 0.9052 -0.7160 32 1 3.3306 1.4843 -2.3597 33 1 1.9458 0.3664 -2.4076 34 1 0.6686 1.9855 -3.7681 35 1 2.2132 1.5916 -4.5607 36 1 -0.0469 5.5809 -7.9381 37 1 2.2708 2.4247 -6.1045 38 1 2.1122 3.9238 -7.0511 39 1 4.1658 4.8146 -5.9844 40 1 4.3244 3.3156 -5.0378 41 1 4.4924 3.2710 -6.8090 42 1 0.4431 4.1161 -2.5837 43 1 1.8276 5.2340 -2.5355 44 1 1.5602 4.0089 -0.3829 45 1 3.1050 3.6149 -1.1750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055066398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:43 Heat of formation + Delta-G solvation = -0.648519 kcal Electronic energy + Delta-G solvation = -20692.180574 eV Core-core repulsion = 17937.226669 eV Total energy + Delta-G solvation = -2754.953904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.28346 -36.73725 -33.73516 -31.94065 -30.97493 -30.24718 -29.28107 -26.83763 -24.90507 -23.56182 -22.93375 -22.52500 -20.33027 -19.34559 -18.48792 -16.25645 -16.15335 -14.90716 -14.61732 -14.34560 -14.25734 -13.86355 -13.72102 -13.24381 -13.21821 -12.94812 -12.64400 -12.17419 -11.80633 -11.78226 -11.50411 -11.36037 -11.17739 -11.08080 -10.82120 -10.75788 -10.69480 -10.56119 -10.41418 -10.28848 -10.09424 -9.70230 -9.60653 -9.28458 -9.03266 -8.32387 -7.87722 -7.04555 -5.94620 -4.07606 3.28337 3.37098 3.41610 4.24003 4.43476 4.84247 5.08661 5.16430 5.26868 5.29595 5.44092 5.50010 5.60023 5.72395 5.77726 5.83452 5.88060 5.95258 6.02101 6.08250 6.13815 6.17056 6.26401 6.34996 6.37823 6.45968 6.49714 6.53377 6.66763 6.74499 6.86351 6.96685 7.11547 7.21026 7.36121 7.48188 7.51686 7.66706 7.80358 8.03698 8.20994 8.38389 8.51901 9.03464 9.59875 11.04247 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.006625 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.064980 B = 4225.553593 C = 4935.383174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.076 0.924 5 C -0.186 4.186 6 N -0.526 5.526 7 C 0.054 3.946 8 C 0.062 3.938 9 N -0.535 5.535 10 C 0.214 3.786 11 H 0.037 0.963 12 C -0.538 4.538 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.065 3.935 23 C 0.059 3.941 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.260 0.740 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.024 0.976 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -7.256 11.650 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.030 4.030 4 H 0.094 0.906 5 C -0.245 4.245 6 N -0.251 5.251 7 C -0.074 4.074 8 C -0.066 4.066 9 N -0.259 5.259 10 C 0.107 3.893 11 H 0.055 0.945 12 C -0.577 4.577 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.714 3.286 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.150 4.150 21 C -0.195 4.195 22 C -0.064 4.064 23 C -0.069 4.069 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.241 -7.144 11.467 14.160 hybrid contribution -1.034 -0.002 -0.229 1.060 sum 3.206 -7.146 11.238 13.698 Atomic orbital electron populations 1.21657 0.95272 1.00510 1.02677 1.21601 0.96803 0.95520 1.01395 1.21728 0.92849 0.95303 0.93119 0.90594 1.22464 0.98174 1.02074 1.01750 1.62354 1.58693 1.02472 1.01557 1.22306 0.96849 0.97465 0.90795 1.21974 0.99498 0.90371 0.94795 1.62631 1.57674 1.01552 1.04073 1.19259 0.92528 0.93690 0.83802 0.94517 1.21800 0.93837 1.35618 1.06487 0.92340 1.24907 0.97679 0.94965 0.95943 1.69885 1.34901 1.36672 1.11141 0.86642 0.86221 0.77739 0.78028 1.19885 1.21107 1.21087 1.21622 0.92092 0.98621 1.02711 1.21704 0.98632 0.99949 0.99181 1.21889 0.98321 0.96877 0.89289 1.22208 0.98256 0.88035 0.98446 0.93406 0.91196 0.93803 0.91803 0.92411 0.92448 0.92752 0.92264 0.94662 0.91343 0.93649 0.91111 0.93043 0.94875 0.88977 0.94245 0.93529 0.95671 0.93648 0.91736 0.91724 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.80 37.16 0.36 -1.32 16 2 C -0.12 -1.31 5.23 -26.73 -0.14 -1.45 16 3 C 0.08 0.98 2.35 -67.71 -0.16 0.82 16 4 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 5 C -0.19 -2.14 8.49 37.16 0.32 -1.82 16 6 N -0.53 -8.04 4.15 -226.48 -0.94 -8.98 16 7 C 0.05 0.86 4.82 -3.77 -0.02 0.84 16 8 C 0.06 1.22 4.96 -3.77 -0.02 1.20 16 9 N -0.53 -11.20 4.15 -227.87 -0.95 -12.15 16 10 C 0.21 5.23 1.75 -68.87 -0.12 5.11 16 11 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 12 C -0.54 -14.35 7.13 -34.44 -0.25 -14.60 16 13 H 0.06 1.60 5.80 -52.49 -0.30 1.29 16 14 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 15 N -0.89 -24.96 11.29 55.43 0.63 -24.33 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.11 -2.64 5.07 -26.73 -0.14 -2.78 16 21 C -0.14 -2.80 9.80 37.16 0.36 -2.44 16 22 C 0.07 1.27 5.32 -3.76 -0.02 1.25 16 23 C 0.06 0.94 5.25 -3.77 -0.02 0.92 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 32 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 33 H 0.07 1.01 6.07 -51.93 -0.32 0.69 16 34 H 0.05 1.00 6.51 -51.92 -0.34 0.66 16 35 H 0.07 1.41 6.07 -51.93 -0.32 1.09 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.03 0.77 6.11 -51.93 -0.32 0.45 16 38 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.92 7.75 -51.93 -0.40 0.51 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.99 6.89 -51.93 -0.36 0.63 16 43 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 44 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.04 0.57 6.60 -51.93 -0.34 0.22 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -26.88 326.47 -9.38 -36.27 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.09 Total: 0.54 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -1.26 Total: -45.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.88 -9.38 -36.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.617 kcal (2) G-P(sol) polarization free energy of solvation -26.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds