Wall clock time and date at job start Mon Mar 30 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 H 1.09000 * 109.47175 * 54.99354 * 3 2 1 5 5 C 1.52996 * 109.47350 * 174.99554 * 3 2 1 6 6 N 1.46906 * 109.46907 * 294.99551 * 3 2 1 7 7 C 1.46961 * 110.99734 * 298.80250 * 6 3 2 8 8 C 1.53049 * 109.36292 * 176.81247 * 7 6 3 9 9 N 1.46955 * 109.36716 * 58.39846 * 8 7 6 10 10 C 1.46896 * 111.00246 * 176.81294 * 9 8 7 11 11 H 1.09004 * 109.47327 * 178.79919 * 10 9 8 12 12 C 1.50703 * 109.47381 * 58.80079 * 10 9 8 13 13 H 1.07996 * 119.99595 * 359.97438 * 12 10 9 14 14 C 1.37869 * 120.00174 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00228 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99934 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47498 * 119.99613 * 16 14 12 19 19 H 1.48509 * 109.46862 * 239.99343 * 16 14 12 20 20 C 1.52999 * 109.47119 * 298.79930 * 10 9 8 21 21 C 1.52995 * 109.47156 * 295.00074 * 20 10 9 22 22 C 1.46961 * 110.88206 * 300.68030 * 9 8 7 23 23 C 1.46952 * 110.99889 * 175.00091 * 6 3 2 24 24 H 1.08998 * 109.47498 * 300.00552 * 1 2 3 25 25 H 1.09005 * 109.46330 * 60.00839 * 1 2 3 26 26 H 1.09006 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47498 * 239.99447 * 2 1 3 28 28 H 1.09006 * 109.46813 * 119.99376 * 2 1 3 29 29 H 1.08997 * 109.47474 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.46922 * 300.00179 * 5 3 2 31 31 H 1.09006 * 109.46822 * 59.99467 * 5 3 2 32 32 H 1.09003 * 109.48904 * 296.77641 * 7 6 3 33 33 H 1.09002 * 109.49205 * 56.84173 * 7 6 3 34 34 H 1.09008 * 109.48964 * 298.43140 * 8 7 6 35 35 H 1.09002 * 109.50883 * 178.37660 * 8 7 6 36 36 H 0.97000 * 120.00230 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47240 * 54.99845 * 20 10 9 38 38 H 1.09000 * 109.47270 * 175.00215 * 20 10 9 39 39 H 1.09002 * 109.47321 * 299.99740 * 21 20 10 40 40 H 1.09001 * 109.47638 * 59.99753 * 21 20 10 41 41 H 1.09006 * 109.47567 * 179.97438 * 21 20 10 42 42 H 1.09003 * 109.48904 * 299.35325 * 22 9 8 43 43 H 1.08997 * 109.51213 * 179.29611 * 22 9 8 44 44 H 1.08999 * 109.49234 * 303.15264 * 23 6 3 45 45 H 1.09000 * 109.49101 * 63.20355 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 1.6515 2.0992 -1.2553 7 6 2.2441 1.4148 -2.4130 8 6 1.7526 2.0790 -3.7013 9 7 2.1221 3.5012 -3.6880 10 6 1.7336 4.1579 -4.9433 11 1 1.9994 5.2141 -4.8983 12 6 0.2458 4.0224 -5.1416 13 1 -0.3512 3.5003 -4.4087 14 6 -0.3528 4.5641 -6.2592 15 7 0.3743 5.1994 -7.1520 16 14 -2.1971 4.3967 -6.5046 17 1 -2.7817 3.6443 -5.3657 18 1 -2.8118 5.7467 -6.5742 19 1 -2.4638 3.6656 -7.7695 20 6 2.4663 3.4970 -6.1126 21 6 3.9703 3.7423 -5.9762 22 6 1.5296 4.1856 -2.5304 23 6 2.0211 3.5214 -1.2420 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9282 2.4719 0.1254 30 1 3.8531 0.9570 1.0572 31 1 3.9995 0.9052 -0.7160 32 1 3.3306 1.4843 -2.3597 33 1 1.9458 0.3664 -2.4076 34 1 0.6686 1.9855 -3.7681 35 1 2.2132 1.5916 -4.5607 36 1 -0.0469 5.5809 -7.9381 37 1 2.2708 2.4247 -6.1045 38 1 2.1122 3.9238 -7.0511 39 1 4.1658 4.8146 -5.9844 40 1 4.3244 3.3156 -5.0378 41 1 4.4924 3.2710 -6.8090 42 1 0.4431 4.1161 -2.5837 43 1 1.8276 5.2340 -2.5355 44 1 1.5602 4.0089 -0.3829 45 1 3.1050 3.6149 -1.1750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055066398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:42 Heat of formation + Delta-G solvation = -16.635675 kcal Electronic energy + Delta-G solvation = -20692.873829 eV Core-core repulsion = 17937.226669 eV Total energy + Delta-G solvation = -2755.647160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64343 -38.27410 -35.30607 -33.72281 -32.49447 -31.70072 -30.40035 -28.61494 -26.51397 -24.86663 -24.40332 -24.03711 -21.67865 -21.01441 -19.99325 -18.15859 -17.57802 -16.66828 -15.90614 -15.87045 -15.61945 -15.36965 -15.11766 -14.70368 -14.45275 -14.36330 -14.08880 -13.66957 -13.39444 -13.21382 -12.90070 -12.88265 -12.68447 -12.54499 -12.47050 -12.21644 -12.10670 -12.00316 -11.89590 -11.58317 -11.55650 -11.52879 -11.17885 -11.04335 -10.89618 -10.41577 -9.10227 -8.86560 -8.01911 -6.24173 1.34539 1.37894 1.47933 2.40273 3.05911 3.15609 3.46089 3.89227 4.08174 4.25455 4.30170 4.37380 4.44461 4.52310 4.59405 4.61202 4.67196 4.74493 4.75453 4.78271 4.85273 4.90352 4.92564 4.97779 5.08893 5.15930 5.20816 5.22171 5.28167 5.29145 5.38624 5.42563 5.46043 5.50915 5.58784 5.64719 5.80277 6.05834 6.21492 6.24040 6.33008 6.45584 6.69649 6.97589 7.46340 8.92600 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.006625 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.064980 B = 4225.553593 C = 4935.383174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.180 4.180 6 N -0.539 5.539 7 C 0.067 3.933 8 C 0.067 3.933 9 N -0.529 5.529 10 C 0.219 3.781 11 H 0.002 0.998 12 C -0.545 4.545 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.911 5.911 16 Si 0.944 3.056 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.106 4.106 21 C -0.124 4.124 22 C 0.066 3.934 23 C 0.071 3.929 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.015 0.985 35 H 0.066 0.934 36 H 0.261 0.739 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -8.655 13.364 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.029 4.029 4 H 0.101 0.899 5 C -0.238 4.238 6 N -0.264 5.264 7 C -0.061 4.061 8 C -0.062 4.062 9 N -0.253 5.253 10 C 0.112 3.888 11 H 0.020 0.980 12 C -0.584 4.584 13 H 0.064 0.936 14 C -0.178 4.178 15 N -0.551 5.551 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.145 4.145 21 C -0.182 4.182 22 C -0.063 4.063 23 C -0.057 4.057 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.857 -8.552 13.199 16.460 hybrid contribution -1.243 0.432 -0.726 1.503 sum 3.614 -8.120 12.473 15.316 Atomic orbital electron populations 1.21617 0.95804 1.00924 1.01506 1.21598 0.96234 0.94784 1.02329 1.21824 0.93822 0.95781 0.91483 0.89907 1.22396 0.96955 1.01858 1.02634 1.62317 1.59195 1.02143 1.02706 1.22135 0.96942 0.97811 0.89212 1.21951 0.97597 0.89588 0.97036 1.62596 1.57334 1.02264 1.03083 1.19035 0.91570 0.92200 0.85985 0.98011 1.21970 0.95109 1.35210 1.06129 0.93611 1.25573 1.01456 0.94904 0.95859 1.70002 1.36297 1.37311 1.11474 0.85726 0.81691 0.77693 0.77822 1.20033 1.20679 1.20501 1.21455 0.94253 0.98059 1.00715 1.21554 0.96250 0.99787 1.00572 1.21907 0.96515 0.97155 0.90724 1.22054 0.98539 0.88534 0.96617 0.92871 0.94009 0.92661 0.92195 0.90073 0.93074 0.90642 0.92831 0.94060 0.89727 0.96696 0.91609 0.92974 0.94859 0.91985 0.94919 0.92587 0.93506 0.96586 0.92349 0.89896 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.80 71.98 0.71 -2.31 16 2 C -0.11 -2.18 5.23 30.60 0.16 -2.02 16 3 C 0.08 1.73 2.35 44.91 0.11 1.84 16 4 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 5 C -0.18 -3.52 8.49 71.98 0.61 -2.91 16 6 N -0.54 -15.61 4.15 -870.46 -3.61 -19.22 16 7 C 0.07 2.05 4.82 86.31 0.42 2.46 16 8 C 0.07 2.64 4.96 86.31 0.43 3.06 16 9 N -0.53 -22.48 4.15 -874.84 -3.63 -26.11 16 10 C 0.22 11.09 1.75 44.17 0.08 11.17 16 11 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 12 C -0.54 -30.05 7.13 25.60 0.18 -29.86 16 13 H 0.05 2.60 5.80 -2.91 -0.02 2.58 16 14 C 0.02 1.21 5.29 84.65 0.45 1.65 16 15 N -0.91 -52.53 11.29 21.44 0.24 -52.29 16 16 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 C -0.11 -5.11 5.07 30.59 0.15 -4.95 16 21 C -0.12 -5.00 9.80 71.98 0.71 -4.29 16 22 C 0.07 2.62 5.32 86.31 0.46 3.08 16 23 C 0.07 2.16 5.25 86.31 0.45 2.62 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.04 1.12 7.75 -2.38 -0.02 1.11 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 1.23 6.11 -2.39 -0.01 1.21 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.05 1.07 6.59 -2.39 -0.02 1.06 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.12 6.46 -2.38 -0.02 1.10 16 32 H 0.04 1.24 6.46 -2.39 -0.02 1.22 16 33 H 0.08 2.33 6.07 -2.39 -0.01 2.32 16 34 H 0.01 0.67 6.51 -2.38 -0.02 0.66 16 35 H 0.07 2.62 6.07 -2.39 -0.01 2.61 16 36 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.03 1.56 6.11 -2.39 -0.01 1.54 16 38 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 41 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.02 0.72 6.89 -2.39 -0.02 0.70 16 43 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 44 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 45 H 0.04 1.25 6.60 -2.39 -0.02 1.24 16 Total: -1.00 -58.95 326.47 0.86 -58.09 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.94 Total: 13.46 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.91 Total: -20.47 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -7.00 Total: -97.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -58.95 0.86 -58.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.451 kcal (2) G-P(sol) polarization free energy of solvation -58.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds