Wall clock time and date at job start Mon Mar 30 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52998 * 109.47129 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47535 * 180.02562 * 4 3 2 6 6 C 1.46848 * 111.00447 * 169.99968 * 5 4 3 7 7 C 1.53037 * 109.52223 * 185.83763 * 6 5 4 8 8 C 1.53115 * 109.27970 * 300.81561 * 7 6 5 9 9 N 1.46894 * 109.52209 * 177.55862 * 8 7 6 10 10 C 1.46905 * 110.99977 * 85.79623 * 9 8 7 11 11 H 1.09000 * 109.47057 * 324.91143 * 10 9 8 12 12 C 1.53008 * 109.47183 * 84.90482 * 10 9 8 13 13 C 1.50699 * 109.47399 * 204.90664 * 10 9 8 14 14 H 1.08002 * 119.99766 * 354.73416 * 13 10 9 15 15 C 1.37870 * 119.99866 * 174.73507 * 13 10 9 16 16 N 1.31524 * 119.99863 * 155.57373 * 15 13 10 17 17 Si 1.86797 * 120.00188 * 335.57290 * 15 13 10 18 18 H 1.48502 * 109.47240 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47181 * 300.00130 * 17 15 13 20 20 H 1.48500 * 109.47072 * 60.00222 * 17 15 13 21 21 C 1.53127 * 109.15671 * 57.65863 * 8 7 6 22 22 C 1.46850 * 110.99756 * 294.20831 * 5 4 3 23 23 H 1.09001 * 109.47447 * 59.99657 * 1 2 3 24 24 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47348 * 299.99819 * 1 2 3 26 26 H 1.08995 * 109.47103 * 239.99960 * 2 1 3 27 27 H 1.08997 * 109.47046 * 120.00057 * 2 1 3 28 28 H 1.08995 * 109.47221 * 60.00033 * 3 2 1 29 29 H 1.08997 * 109.47263 * 299.99924 * 3 2 1 30 30 H 1.09006 * 109.47330 * 59.99227 * 4 3 2 31 31 H 1.09010 * 109.46901 * 300.00083 * 4 3 2 32 32 H 1.08997 * 109.46329 * 65.81937 * 6 5 4 33 33 H 1.09004 * 109.44771 * 305.84915 * 6 5 4 34 34 H 1.09002 * 109.50216 * 180.87675 * 7 6 5 35 35 H 1.09005 * 109.50397 * 60.76133 * 7 6 5 36 36 H 1.08997 * 109.52266 * 297.69248 * 8 7 6 37 37 H 1.00901 * 111.00369 * 321.84381 * 9 8 7 38 38 H 1.08991 * 109.47477 * 182.14379 * 12 10 9 39 39 H 1.09004 * 109.47082 * 302.14607 * 12 10 9 40 40 H 1.09001 * 109.46662 * 62.14325 * 12 10 9 41 41 H 0.96995 * 119.99607 * 354.90868 * 16 15 13 42 42 H 1.09000 * 109.50342 * 62.28711 * 21 8 7 43 43 H 1.09003 * 109.50047 * 182.40593 * 21 8 7 44 44 H 1.09001 * 109.46247 * 294.17484 * 22 5 4 45 45 H 1.09005 * 109.46280 * 54.14092 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5081 2.8735 0.2375 7 6 5.9575 4.3298 0.3762 8 6 5.6072 5.0912 -0.9052 9 7 5.9834 6.5033 -0.7554 10 6 7.3928 6.7134 -1.1129 11 1 7.9775 5.8443 -0.8113 12 6 7.5117 6.9078 -2.6259 13 6 7.9130 7.9387 -0.4065 14 1 7.2412 8.5529 0.1748 15 6 9.2464 8.2757 -0.5024 16 7 9.6236 9.5234 -0.3271 17 14 10.5173 6.9602 -0.8814 18 1 11.8678 7.5759 -0.9297 19 1 10.4853 5.9209 0.1788 20 1 10.2093 6.3379 -2.1941 21 6 4.1002 4.9870 -1.1555 22 6 3.7045 3.5117 -1.2499 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8908 31 1 3.9336 0.9285 0.8892 32 1 6.0285 2.4111 -0.6012 33 1 5.7430 2.3319 1.1538 34 1 7.0351 4.3643 0.5369 35 1 5.4478 4.7888 1.2233 36 1 6.1480 4.6573 -1.7461 37 1 5.7951 6.8305 0.1803 38 1 8.5611 7.0257 -2.8957 39 1 7.1005 6.0375 -3.1375 40 1 6.9580 7.7987 -2.9223 41 1 8.9584 10.2183 -0.2037 42 1 3.5612 5.4565 -0.3326 43 1 3.8507 5.4911 -2.0892 44 1 4.2334 3.0464 -2.0817 45 1 2.6297 3.4337 -1.4139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:10 Heat of formation + Delta-G solvation = -23.093028 kcal Electronic energy + Delta-G solvation = -19509.077896 eV Core-core repulsion = 16753.150724 eV Total energy + Delta-G solvation = -2755.927171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.21768 -36.57475 -34.97579 -33.02463 -31.36038 -30.70079 -29.05742 -27.23684 -24.81930 -23.66172 -22.95188 -21.79617 -20.88446 -19.61640 -19.50702 -17.48273 -16.00250 -15.83508 -14.90656 -14.77891 -14.50501 -14.14485 -13.76647 -13.59658 -13.38428 -13.17230 -12.81696 -12.56672 -12.35791 -12.08958 -11.89187 -11.53683 -11.42079 -11.33675 -11.15427 -11.03397 -10.94872 -10.73290 -10.65655 -10.35655 -10.32245 -10.02692 -9.90800 -9.70950 -8.93898 -8.30198 -8.18395 -7.39253 -6.46569 -4.04307 3.39456 3.42567 3.60757 3.85380 4.50559 4.64331 4.73831 4.87822 4.91906 5.04749 5.11880 5.15690 5.22491 5.33445 5.41074 5.45014 5.48641 5.57508 5.60725 5.63221 5.71960 5.78091 5.84073 5.94680 5.95321 5.99896 6.07702 6.15142 6.24908 6.32605 6.46151 6.57230 6.63067 6.74050 6.86450 6.99359 7.13271 7.15732 7.51652 7.81366 8.21477 8.41148 8.57094 8.98046 9.61007 10.90517 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.046719 B = 0.003869 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.186749 B = 7234.911908 C = 7451.756618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.062 3.938 7 C -0.145 4.145 8 C 0.086 3.914 9 N -0.676 5.676 10 C 0.192 3.808 11 H -0.009 1.009 12 C -0.133 4.133 13 C -0.612 4.612 14 H 0.060 0.940 15 C 0.039 3.961 16 N -0.897 5.897 17 Si 1.036 2.964 18 H -0.285 1.285 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.102 4.102 22 C 0.055 3.945 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.337 0.663 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.049 0.951 41 H 0.270 0.730 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 -18.217 -0.378 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.066 4.066 7 C -0.184 4.184 8 C -0.026 4.026 9 N -0.306 5.306 10 C 0.083 3.917 11 H 0.009 0.991 12 C -0.191 4.191 13 C -0.649 4.649 14 H 0.079 0.921 15 C -0.167 4.167 16 N -0.530 5.530 17 Si 0.864 3.136 18 H -0.211 1.211 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.141 4.141 22 C -0.073 4.073 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.600 -17.991 -0.789 21.979 hybrid contribution -0.733 -0.584 0.277 0.977 sum -13.333 -18.575 -0.513 22.871 Atomic orbital electron populations 1.21760 0.95812 1.01414 1.01917 1.21495 0.95921 0.96939 1.01832 1.21638 0.94675 0.96360 1.02811 1.22106 0.95496 0.89258 1.00440 1.61948 1.14101 1.14797 1.35441 1.22029 0.86893 0.97725 1.00003 1.22352 1.01120 0.94753 1.00196 1.21602 0.95045 0.90074 0.95831 1.60637 1.23664 1.14387 1.31873 1.19357 0.83977 0.95662 0.92694 0.99116 1.22057 0.99880 0.99009 0.98165 1.22025 0.96424 1.11126 1.35355 0.92141 1.25635 0.98116 0.99189 0.93799 1.70839 1.38216 1.00135 1.43808 0.84150 0.76523 0.75820 0.77064 1.21085 1.21210 1.20377 1.21561 0.96275 0.93889 1.02328 1.22166 1.00298 0.95257 0.89568 0.92775 0.92928 0.92662 0.92286 0.92067 0.91103 0.91897 0.95269 0.91097 0.95241 0.91250 0.91416 0.91143 0.91722 0.84451 0.93630 0.96385 0.93215 0.92009 0.91386 0.91276 0.95342 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -1.06 5.14 -26.73 -0.14 -1.19 16 4 C 0.05 0.57 4.96 -3.83 -0.02 0.55 16 5 N -0.54 -6.80 4.66 -234.66 -1.09 -7.89 16 6 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 7 C -0.14 -2.31 5.34 -26.65 -0.14 -2.45 16 8 C 0.09 1.48 2.33 -67.59 -0.16 1.32 16 9 N -0.68 -14.18 6.06 -100.82 -0.61 -14.79 16 10 C 0.19 4.63 2.02 -68.86 -0.14 4.49 16 11 H -0.01 -0.21 5.78 -51.93 -0.30 -0.51 16 12 C -0.13 -3.08 9.12 37.16 0.34 -2.74 16 13 C -0.61 -17.21 8.77 -34.44 -0.30 -17.51 16 14 H 0.06 1.83 7.92 -52.49 -0.42 1.42 16 15 C 0.04 1.13 5.25 -17.82 -0.09 1.04 16 16 N -0.90 -27.52 13.70 55.43 0.76 -26.76 16 17 Si 1.04 25.29 26.56 -169.99 -4.52 20.77 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.36 5.98 56.52 0.34 -6.02 16 21 C -0.10 -1.51 5.70 -26.65 -0.15 -1.67 16 22 C 0.06 0.70 5.29 -3.83 -0.02 0.68 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 30 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.07 0.70 7.99 -51.92 -0.41 0.28 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 34 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 35 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.06 1.18 7.10 -51.93 -0.37 0.81 16 37 H 0.34 7.20 7.96 -39.29 -0.31 6.88 16 38 H 0.04 1.08 5.46 -51.93 -0.28 0.79 16 39 H 0.02 0.36 7.41 -51.93 -0.38 -0.02 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.84 6.21 -51.93 -0.32 0.51 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -29.08 338.70 -9.64 -38.72 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.65 Total: 3.27 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.64 Total: -18.43 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.94 Total: -49.44 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.52 Total: 20.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.08 -9.64 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.629 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds