Wall clock time and date at job start Mon Mar 30 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52998 * 109.47129 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47535 * 180.02562 * 4 3 2 6 6 C 1.46848 * 111.00447 * 169.99968 * 5 4 3 7 7 C 1.53037 * 109.52223 * 185.83763 * 6 5 4 8 8 C 1.53115 * 109.27970 * 300.81561 * 7 6 5 9 9 N 1.46894 * 109.52209 * 177.55862 * 8 7 6 10 10 C 1.46905 * 110.99977 * 85.79623 * 9 8 7 11 11 H 1.09000 * 109.47057 * 324.91143 * 10 9 8 12 12 C 1.53008 * 109.47183 * 84.90482 * 10 9 8 13 13 C 1.50699 * 109.47399 * 204.90664 * 10 9 8 14 14 H 1.08002 * 119.99766 * 354.73416 * 13 10 9 15 15 C 1.37870 * 119.99866 * 174.73507 * 13 10 9 16 16 N 1.31524 * 119.99863 * 155.57373 * 15 13 10 17 17 Si 1.86797 * 120.00188 * 335.57290 * 15 13 10 18 18 H 1.48502 * 109.47240 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47181 * 300.00130 * 17 15 13 20 20 H 1.48500 * 109.47072 * 60.00222 * 17 15 13 21 21 C 1.53127 * 109.15671 * 57.65863 * 8 7 6 22 22 C 1.46850 * 110.99756 * 294.20831 * 5 4 3 23 23 H 1.09001 * 109.47447 * 59.99657 * 1 2 3 24 24 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47348 * 299.99819 * 1 2 3 26 26 H 1.08995 * 109.47103 * 239.99960 * 2 1 3 27 27 H 1.08997 * 109.47046 * 120.00057 * 2 1 3 28 28 H 1.08995 * 109.47221 * 60.00033 * 3 2 1 29 29 H 1.08997 * 109.47263 * 299.99924 * 3 2 1 30 30 H 1.09006 * 109.47330 * 59.99227 * 4 3 2 31 31 H 1.09010 * 109.46901 * 300.00083 * 4 3 2 32 32 H 1.08997 * 109.46329 * 65.81937 * 6 5 4 33 33 H 1.09004 * 109.44771 * 305.84915 * 6 5 4 34 34 H 1.09002 * 109.50216 * 180.87675 * 7 6 5 35 35 H 1.09005 * 109.50397 * 60.76133 * 7 6 5 36 36 H 1.08997 * 109.52266 * 297.69248 * 8 7 6 37 37 H 1.00901 * 111.00369 * 321.84381 * 9 8 7 38 38 H 1.08991 * 109.47477 * 182.14379 * 12 10 9 39 39 H 1.09004 * 109.47082 * 302.14607 * 12 10 9 40 40 H 1.09001 * 109.46662 * 62.14325 * 12 10 9 41 41 H 0.96995 * 119.99607 * 354.90868 * 16 15 13 42 42 H 1.09000 * 109.50342 * 62.28711 * 21 8 7 43 43 H 1.09003 * 109.50047 * 182.40593 * 21 8 7 44 44 H 1.09001 * 109.46247 * 294.17484 * 22 5 4 45 45 H 1.09005 * 109.46280 * 54.14092 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5081 2.8735 0.2375 7 6 5.9575 4.3298 0.3762 8 6 5.6072 5.0912 -0.9052 9 7 5.9834 6.5033 -0.7554 10 6 7.3928 6.7134 -1.1129 11 1 7.9775 5.8443 -0.8113 12 6 7.5117 6.9078 -2.6259 13 6 7.9130 7.9387 -0.4065 14 1 7.2412 8.5529 0.1748 15 6 9.2464 8.2757 -0.5024 16 7 9.6236 9.5234 -0.3271 17 14 10.5173 6.9602 -0.8814 18 1 11.8678 7.5759 -0.9297 19 1 10.4853 5.9209 0.1788 20 1 10.2093 6.3379 -2.1941 21 6 4.1002 4.9870 -1.1555 22 6 3.7045 3.5117 -1.2499 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8908 31 1 3.9336 0.9285 0.8892 32 1 6.0285 2.4111 -0.6012 33 1 5.7430 2.3319 1.1538 34 1 7.0351 4.3643 0.5369 35 1 5.4478 4.7888 1.2233 36 1 6.1480 4.6573 -1.7461 37 1 5.7951 6.8305 0.1803 38 1 8.5611 7.0257 -2.8957 39 1 7.1005 6.0375 -3.1375 40 1 6.9580 7.7987 -2.9223 41 1 8.9584 10.2183 -0.2037 42 1 3.5612 5.4565 -0.3326 43 1 3.8507 5.4911 -2.0892 44 1 4.2334 3.0464 -2.0817 45 1 2.6297 3.4337 -1.4139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:10 Heat of formation + Delta-G solvation = -42.235430 kcal Electronic energy + Delta-G solvation = -19509.907973 eV Core-core repulsion = 16753.150724 eV Total energy + Delta-G solvation = -2756.757248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36578 -37.93261 -36.09274 -34.70501 -32.97970 -31.82838 -30.33398 -28.44967 -26.82776 -24.80609 -24.00716 -22.82294 -21.72084 -21.34682 -20.87243 -19.57638 -17.14945 -16.68102 -16.48076 -15.83833 -15.77869 -15.39266 -15.17270 -15.00550 -14.62532 -14.29996 -14.09753 -13.86177 -13.77665 -13.37954 -13.13962 -12.98895 -12.81037 -12.51836 -12.24236 -12.17726 -12.12950 -11.99947 -11.91997 -11.69297 -11.65296 -11.49002 -11.39999 -11.09505 -11.05992 -10.40143 -9.27712 -9.08206 -8.75246 -6.34912 1.43986 1.49397 1.69868 2.47367 2.91064 2.98706 3.45762 3.82682 3.88961 4.04368 4.11096 4.18185 4.27014 4.32706 4.42406 4.47730 4.56888 4.60839 4.64925 4.67067 4.71368 4.77772 4.84833 4.87792 4.94149 4.97786 5.00374 5.03665 5.07510 5.13017 5.17119 5.28910 5.31478 5.39147 5.43090 5.51003 5.60308 5.81890 6.04634 6.14332 6.19548 6.32952 6.70957 6.81534 7.39428 8.59011 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.046719 B = 0.003869 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.186749 B = 7234.911908 C = 7451.756618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.056 3.944 5 N -0.547 5.547 6 C 0.068 3.932 7 C -0.139 4.139 8 C 0.085 3.915 9 N -0.682 5.682 10 C 0.196 3.804 11 H -0.005 1.005 12 C -0.128 4.128 13 C -0.615 4.615 14 H 0.023 0.977 15 C -0.010 4.010 16 N -0.929 5.929 17 Si 1.077 2.923 18 H -0.287 1.287 19 H -0.267 1.267 20 H -0.250 1.250 21 C -0.095 4.095 22 C 0.062 3.938 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.332 0.668 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 -21.215 -1.105 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.071 4.071 5 N -0.272 5.272 6 C -0.060 4.060 7 C -0.179 4.179 8 C -0.025 4.025 9 N -0.311 5.311 10 C 0.086 3.914 11 H 0.012 0.988 12 C -0.186 4.186 13 C -0.653 4.653 14 H 0.041 0.959 15 C -0.210 4.210 16 N -0.563 5.563 17 Si 0.898 3.102 18 H -0.213 1.213 19 H -0.193 1.193 20 H -0.174 1.174 21 C -0.133 4.133 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.284 -21.009 -1.518 24.903 hybrid contribution -0.637 0.393 0.553 0.931 sum -13.920 -20.616 -0.965 24.894 Atomic orbital electron populations 1.21762 0.95383 1.01953 1.01837 1.21468 0.96271 0.95905 1.02214 1.21589 0.93751 0.97296 1.02315 1.22165 0.96199 0.87802 1.00959 1.61939 1.13459 1.16412 1.35431 1.21937 0.87566 0.95690 1.00852 1.22236 1.00048 0.96557 0.99058 1.21697 0.96654 0.87833 0.96341 1.60616 1.21646 1.17302 1.31540 1.19205 0.85632 0.93649 0.92875 0.98778 1.21951 0.99567 0.99643 0.97440 1.22231 0.96125 1.11998 1.34936 0.95871 1.27041 1.00644 1.00134 0.93176 1.70965 1.37804 1.00919 1.46616 0.83636 0.73911 0.73813 0.78821 1.21259 1.19268 1.17420 1.21474 0.94146 0.95755 1.01932 1.22103 1.01349 0.93449 0.89749 0.92803 0.92117 0.92829 0.91887 0.91700 0.91916 0.92040 0.94803 0.90460 0.94944 0.89924 0.93005 0.91844 0.92146 0.85101 0.94101 0.93506 0.94634 0.93628 0.92070 0.91404 0.95054 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.51 5.93 30.59 0.18 -1.32 16 3 C -0.11 -1.73 5.14 30.59 0.16 -1.58 16 4 C 0.06 1.00 4.96 86.30 0.43 1.43 16 5 N -0.55 -12.44 4.66 -896.34 -4.17 -16.62 16 6 C 0.07 1.67 5.46 86.33 0.47 2.14 16 7 C -0.14 -4.28 5.34 30.65 0.16 -4.12 16 8 C 0.09 2.83 2.33 45.00 0.11 2.94 16 9 N -0.68 -28.46 6.06 -472.89 -2.86 -31.32 16 10 C 0.20 9.34 2.02 44.17 0.09 9.42 16 11 H -0.01 -0.25 5.78 -2.39 -0.01 -0.26 16 12 C -0.13 -5.74 9.12 71.98 0.66 -5.08 16 13 C -0.62 -35.32 8.77 25.60 0.22 -35.09 16 14 H 0.02 1.46 7.92 -2.91 -0.02 1.44 16 15 C -0.01 -0.57 5.25 84.65 0.44 -0.13 16 16 N -0.93 -58.43 13.70 21.45 0.29 -58.14 16 17 Si 1.08 50.14 26.56 68.60 1.82 51.96 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.25 -10.48 5.98 99.48 0.59 -9.88 16 21 C -0.09 -2.65 5.70 30.65 0.17 -2.47 16 22 C 0.06 1.40 5.29 86.32 0.46 1.86 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 0.97 6.43 -2.39 -0.02 0.96 16 30 H 0.03 0.59 8.12 -2.38 -0.02 0.57 16 31 H 0.08 1.29 7.99 -2.38 -0.02 1.27 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.82 8.01 -2.38 -0.02 1.80 16 34 H 0.05 1.74 7.52 -2.39 -0.02 1.72 16 35 H 0.06 2.02 8.09 -2.38 -0.02 2.00 16 36 H 0.06 2.08 7.10 -2.39 -0.02 2.06 16 37 H 0.33 14.40 7.96 -89.69 -0.71 13.69 16 38 H 0.04 1.84 5.46 -2.39 -0.01 1.83 16 39 H 0.05 1.81 7.41 -2.39 -0.02 1.79 16 40 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 1.79 6.21 -2.38 -0.01 1.77 16 Total: -1.00 -62.81 338.70 -0.59 -63.41 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.06 Total: 23.76 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.27 Total: -33.05 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -6.74 Total: -106.07 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.82 Total: 51.96 kcal Total: -62.81 -0.59 -63.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds