Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46642 * 2 1 4 4 N 1.46906 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.46842 * 111.00071 * 169.99738 * 4 3 2 6 6 C 1.53034 * 109.52301 * 185.83925 * 5 4 3 7 7 C 1.53110 * 109.28153 * 300.82271 * 6 5 4 8 8 C 1.52995 * 109.52636 * 177.55885 * 7 6 5 9 9 N 1.46910 * 109.47174 * 175.12654 * 8 7 6 10 10 C 1.46897 * 110.99968 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47061 * 324.99931 * 10 9 8 12 12 C 1.53000 * 109.47069 * 84.99944 * 10 9 8 13 13 C 1.50693 * 109.47041 * 204.99783 * 10 9 8 14 14 H 1.08002 * 120.00331 * 354.37159 * 13 10 9 15 15 C 1.37885 * 120.00119 * 174.35968 * 13 10 9 16 16 N 1.31516 * 120.00168 * 156.60535 * 15 13 10 17 17 Si 1.86799 * 119.99974 * 336.88923 * 15 13 10 18 18 H 1.48495 * 109.47179 * 179.71887 * 17 15 13 19 19 H 1.48504 * 109.47000 * 299.71811 * 17 15 13 20 20 H 1.48500 * 109.47297 * 59.71926 * 17 15 13 21 21 C 1.53123 * 109.21539 * 57.62038 * 7 6 5 22 22 C 1.46838 * 110.99930 * 294.21046 * 4 3 2 23 23 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47214 * 300.00118 * 1 2 3 25 25 H 1.08998 * 109.47457 * 60.00192 * 1 2 3 26 26 H 1.09002 * 109.47036 * 240.00404 * 2 1 3 27 27 H 1.08998 * 109.46935 * 119.99861 * 2 1 3 28 28 H 1.09001 * 109.47412 * 60.00003 * 3 2 1 29 29 H 1.09007 * 109.47482 * 299.99676 * 3 2 1 30 30 H 1.09001 * 109.46343 * 65.82437 * 5 4 3 31 31 H 1.09006 * 109.45608 * 305.85373 * 5 4 3 32 32 H 1.09004 * 109.50643 * 180.87592 * 6 5 4 33 33 H 1.09006 * 109.50573 * 60.76338 * 6 5 4 34 34 H 1.09001 * 109.52466 * 297.69200 * 7 6 5 35 35 H 1.09000 * 109.47506 * 55.12667 * 8 7 6 36 36 H 1.08997 * 109.47060 * 295.12422 * 8 7 6 37 37 H 1.00899 * 110.99576 * 303.94936 * 9 8 7 38 38 H 1.08996 * 109.47246 * 53.10600 * 12 10 9 39 39 H 1.09003 * 109.46967 * 173.10646 * 12 10 9 40 40 H 1.09006 * 109.47378 * 293.10198 * 12 10 9 41 41 H 0.97002 * 119.99516 * 355.21605 * 16 15 13 42 42 H 1.08998 * 109.49987 * 62.31607 * 21 7 6 43 43 H 1.08993 * 109.50507 * 182.44262 * 21 7 6 44 44 H 1.09005 * 109.46204 * 294.17615 * 22 4 3 45 45 H 1.08999 * 109.46547 * 54.15014 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0351 2.7928 -0.2388 6 6 5.5578 2.7312 -0.3775 7 6 6.1591 2.1476 0.9040 8 6 7.6763 2.0268 0.7481 9 7 8.2647 1.5773 2.0169 10 6 9.7239 1.4504 1.9048 11 1 9.9828 1.1060 0.9035 12 6 10.3753 2.8110 2.1604 13 6 10.2213 0.4563 2.9222 14 1 9.5381 0.0359 3.6454 15 6 11.5486 0.0831 2.9298 16 7 12.0926 -0.3894 4.0301 17 14 12.5763 0.2559 1.3796 18 1 13.9620 -0.2042 1.6504 19 1 11.9829 -0.5702 0.2976 20 1 12.6011 1.6797 0.9582 21 6 5.5588 0.7618 1.1567 22 6 4.0358 0.8803 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7726 3.4379 0.5997 31 1 3.6027 3.1944 -1.1553 32 1 5.9496 3.7355 -0.5388 33 1 5.8208 2.0972 -1.2244 34 1 5.9302 2.8024 1.7448 35 1 8.0923 2.9976 0.4784 36 1 7.9047 1.3036 -0.0347 37 1 8.0130 2.1975 2.7719 38 1 10.0195 3.2116 3.1096 39 1 11.4583 2.6938 2.1986 40 1 10.1123 3.4969 1.3550 41 1 11.5807 -0.4106 4.8537 42 1 5.8217 0.0960 0.3346 43 1 5.9511 0.3601 2.0909 44 1 3.7733 1.5344 2.0809 45 1 3.6041 -0.1070 1.4138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068613306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = -21.884109 kcal Electronic energy + Delta-G solvation = -19391.551866 eV Core-core repulsion = 16635.677117 eV Total energy + Delta-G solvation = -2755.874749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.28746 -36.61856 -34.90763 -32.88630 -31.73120 -30.75251 -29.06953 -26.49950 -24.79034 -24.02186 -23.23335 -21.55114 -20.79098 -20.02964 -19.37500 -17.38696 -16.09434 -15.59325 -14.81999 -14.66205 -14.43299 -14.32659 -14.02061 -13.55003 -13.39782 -12.92319 -12.87113 -12.63636 -12.38532 -11.94575 -11.87384 -11.73124 -11.58810 -11.26841 -11.18316 -11.07978 -11.05480 -10.83086 -10.46605 -10.31269 -10.08053 -10.03026 -9.95090 -9.66902 -8.98557 -8.36269 -8.11758 -7.34341 -6.37852 -3.93940 3.42324 3.47946 3.64725 3.81144 4.56157 4.66938 4.79950 4.85883 4.89872 5.01180 5.14702 5.26355 5.27614 5.29530 5.34466 5.46907 5.54007 5.54975 5.59011 5.66508 5.78231 5.81057 5.83838 5.96756 5.98746 6.07228 6.12156 6.19026 6.23988 6.34169 6.36218 6.45068 6.59878 6.69589 6.72351 6.91768 7.07178 7.10357 7.24497 7.88739 8.35496 8.43844 8.52428 9.09143 9.70222 10.98895 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.003817 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.158097 B = 7332.978903 C = 7664.382170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.060 3.940 6 C -0.111 4.111 7 C -0.084 4.084 8 C 0.062 3.938 9 N -0.672 5.672 10 C 0.190 3.810 11 H 0.024 0.976 12 C -0.176 4.176 13 C -0.587 4.587 14 H 0.063 0.937 15 C 0.033 3.967 16 N -0.904 5.904 17 Si 1.036 2.964 18 H -0.286 1.286 19 H -0.284 1.284 20 H -0.280 1.280 21 C -0.101 4.101 22 C 0.053 3.947 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.065 0.935 37 H 0.326 0.674 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.268 0.732 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.028 0.972 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.614 5.900 -9.082 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.103 4.103 8 C -0.068 4.068 9 N -0.301 5.301 10 C 0.081 3.919 11 H 0.042 0.958 12 C -0.235 4.235 13 C -0.625 4.625 14 H 0.081 0.919 15 C -0.173 4.173 16 N -0.538 5.538 17 Si 0.864 3.136 18 H -0.212 1.212 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.138 4.138 22 C -0.075 4.075 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.046 0.954 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.052 4.618 -10.215 21.249 hybrid contribution -1.501 1.886 1.298 2.738 sum -19.553 6.504 -8.918 22.453 Atomic orbital electron populations 1.21741 0.95832 1.01702 1.01581 1.21556 0.95115 0.96520 1.02878 1.22123 0.87644 0.97143 1.00340 1.61952 1.06673 1.21961 1.35815 1.22038 0.95932 0.88886 0.99958 1.21619 0.93693 1.00823 0.98828 1.21183 0.95236 0.97047 0.96787 1.21992 0.92663 0.97660 0.94444 1.60723 1.12555 1.53317 1.03552 1.19471 0.82837 0.92458 0.97179 0.95819 1.22824 1.02313 0.99737 0.98638 1.21917 0.95757 1.27396 1.17448 0.91910 1.25634 0.95652 0.94088 1.01897 1.70847 1.38382 1.44612 0.99941 0.84160 0.76422 0.76757 0.76224 1.21160 1.21013 1.20696 1.21517 0.92048 0.96828 1.03457 1.22226 0.96760 0.99302 0.89193 0.92566 0.92981 0.92799 0.91110 0.91813 0.95288 0.91161 0.95314 0.91221 0.91901 0.91033 0.92199 0.96625 0.91659 0.85781 0.93864 0.92588 0.96296 0.92187 0.91461 0.89926 0.95415 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.09 5.86 -26.73 -0.16 -1.25 16 3 C 0.06 0.53 4.96 -3.82 -0.02 0.52 16 4 N -0.54 -6.25 4.66 -234.66 -1.09 -7.34 16 5 C 0.06 0.66 5.46 -3.84 -0.02 0.64 16 6 C -0.11 -1.34 5.38 -26.66 -0.14 -1.48 16 7 C -0.08 -1.18 2.40 -90.50 -0.22 -1.40 16 8 C 0.06 1.07 4.88 -3.82 -0.02 1.05 16 9 N -0.67 -13.90 5.74 -107.95 -0.62 -14.52 16 10 C 0.19 4.56 2.17 -68.87 -0.15 4.41 16 11 H 0.02 0.59 6.37 -51.93 -0.33 0.26 16 12 C -0.18 -3.91 8.90 37.16 0.33 -3.58 16 13 C -0.59 -16.75 9.05 -34.44 -0.31 -17.06 16 14 H 0.06 1.95 8.06 -52.49 -0.42 1.53 16 15 C 0.03 0.95 5.19 -17.82 -0.09 0.86 16 16 N -0.90 -28.00 13.70 55.43 0.76 -27.24 16 17 Si 1.04 25.49 26.44 -169.99 -4.50 21.00 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.43 6.15 56.52 0.35 -6.08 16 21 C -0.10 -1.45 5.24 -26.64 -0.14 -1.59 16 22 C 0.05 0.65 5.29 -3.83 -0.02 0.63 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 28 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.07 0.62 7.99 -51.92 -0.41 0.21 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.33 6.47 8.38 -39.29 -0.33 6.14 16 38 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 39 H 0.06 1.31 5.48 -51.93 -0.28 1.03 16 40 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 41 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -29.62 339.90 -9.66 -39.28 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.74 Total: 2.68 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.59 Total: -18.98 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.95 Total: -49.10 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.50 Total: 21.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.62 -9.66 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.394 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds