Wall clock time and date at job start Mon Mar 30 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46642 * 2 1 4 4 N 1.46906 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.46842 * 111.00071 * 169.99738 * 4 3 2 6 6 C 1.53034 * 109.52301 * 185.83925 * 5 4 3 7 7 C 1.53110 * 109.28153 * 300.82271 * 6 5 4 8 8 C 1.52995 * 109.52636 * 177.55885 * 7 6 5 9 9 N 1.46910 * 109.47174 * 175.12654 * 8 7 6 10 10 C 1.46897 * 110.99968 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47061 * 324.99931 * 10 9 8 12 12 C 1.53000 * 109.47069 * 84.99944 * 10 9 8 13 13 C 1.50693 * 109.47041 * 204.99783 * 10 9 8 14 14 H 1.08002 * 120.00331 * 354.37159 * 13 10 9 15 15 C 1.37885 * 120.00119 * 174.35968 * 13 10 9 16 16 N 1.31516 * 120.00168 * 156.60535 * 15 13 10 17 17 Si 1.86799 * 119.99974 * 336.88923 * 15 13 10 18 18 H 1.48495 * 109.47179 * 179.71887 * 17 15 13 19 19 H 1.48504 * 109.47000 * 299.71811 * 17 15 13 20 20 H 1.48500 * 109.47297 * 59.71926 * 17 15 13 21 21 C 1.53123 * 109.21539 * 57.62038 * 7 6 5 22 22 C 1.46838 * 110.99930 * 294.21046 * 4 3 2 23 23 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47214 * 300.00118 * 1 2 3 25 25 H 1.08998 * 109.47457 * 60.00192 * 1 2 3 26 26 H 1.09002 * 109.47036 * 240.00404 * 2 1 3 27 27 H 1.08998 * 109.46935 * 119.99861 * 2 1 3 28 28 H 1.09001 * 109.47412 * 60.00003 * 3 2 1 29 29 H 1.09007 * 109.47482 * 299.99676 * 3 2 1 30 30 H 1.09001 * 109.46343 * 65.82437 * 5 4 3 31 31 H 1.09006 * 109.45608 * 305.85373 * 5 4 3 32 32 H 1.09004 * 109.50643 * 180.87592 * 6 5 4 33 33 H 1.09006 * 109.50573 * 60.76338 * 6 5 4 34 34 H 1.09001 * 109.52466 * 297.69200 * 7 6 5 35 35 H 1.09000 * 109.47506 * 55.12667 * 8 7 6 36 36 H 1.08997 * 109.47060 * 295.12422 * 8 7 6 37 37 H 1.00899 * 110.99576 * 303.94936 * 9 8 7 38 38 H 1.08996 * 109.47246 * 53.10600 * 12 10 9 39 39 H 1.09003 * 109.46967 * 173.10646 * 12 10 9 40 40 H 1.09006 * 109.47378 * 293.10198 * 12 10 9 41 41 H 0.97002 * 119.99516 * 355.21605 * 16 15 13 42 42 H 1.08998 * 109.49987 * 62.31607 * 21 7 6 43 43 H 1.08993 * 109.50507 * 182.44262 * 21 7 6 44 44 H 1.09005 * 109.46204 * 294.17615 * 22 4 3 45 45 H 1.08999 * 109.46547 * 54.15014 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0351 2.7928 -0.2388 6 6 5.5578 2.7312 -0.3775 7 6 6.1591 2.1476 0.9040 8 6 7.6763 2.0268 0.7481 9 7 8.2647 1.5773 2.0169 10 6 9.7239 1.4504 1.9048 11 1 9.9828 1.1060 0.9035 12 6 10.3753 2.8110 2.1604 13 6 10.2213 0.4563 2.9222 14 1 9.5381 0.0359 3.6454 15 6 11.5486 0.0831 2.9298 16 7 12.0926 -0.3894 4.0301 17 14 12.5763 0.2559 1.3796 18 1 13.9620 -0.2042 1.6504 19 1 11.9829 -0.5702 0.2976 20 1 12.6011 1.6797 0.9582 21 6 5.5588 0.7618 1.1567 22 6 4.0358 0.8803 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7726 3.4379 0.5997 31 1 3.6027 3.1944 -1.1553 32 1 5.9496 3.7355 -0.5388 33 1 5.8208 2.0972 -1.2244 34 1 5.9302 2.8024 1.7448 35 1 8.0923 2.9976 0.4784 36 1 7.9047 1.3036 -0.0347 37 1 8.0130 2.1975 2.7719 38 1 10.0195 3.2116 3.1096 39 1 11.4583 2.6938 2.1986 40 1 10.1123 3.4969 1.3550 41 1 11.5807 -0.4106 4.8537 42 1 5.8217 0.0960 0.3346 43 1 5.9511 0.3601 2.0909 44 1 3.7733 1.5344 2.0809 45 1 3.6041 -0.1070 1.4138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068613306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:31 Heat of formation + Delta-G solvation = -41.577171 kcal Electronic energy + Delta-G solvation = -19392.405821 eV Core-core repulsion = 16635.677117 eV Total energy + Delta-G solvation = -2756.728704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29540 -38.10440 -36.13377 -34.52132 -33.15416 -31.74641 -30.61530 -27.58937 -26.76473 -25.17918 -24.23678 -22.64901 -21.86738 -21.61812 -20.58116 -19.53185 -17.05844 -16.45926 -16.33686 -15.96382 -15.74530 -15.51090 -15.31346 -14.96954 -14.69200 -14.22660 -14.03947 -13.86667 -13.67573 -13.32029 -13.19417 -13.09483 -12.89671 -12.50747 -12.39803 -12.32420 -12.09008 -11.97386 -11.88407 -11.69024 -11.60051 -11.48058 -11.17367 -11.11703 -11.00170 -10.35068 -9.24833 -9.04909 -8.65636 -6.26770 1.45859 1.53110 1.72476 2.51309 2.95691 3.04313 3.48920 3.82186 3.90267 3.93943 4.14859 4.19547 4.35002 4.41800 4.45350 4.47207 4.51322 4.59513 4.63029 4.66358 4.71331 4.75634 4.80532 4.85317 4.87613 4.94523 4.96885 5.01412 5.05723 5.15189 5.20288 5.28754 5.31358 5.42185 5.42441 5.44809 5.55356 5.90958 6.11696 6.17072 6.22651 6.46239 6.75378 6.80799 7.47544 8.65505 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.003817 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.158097 B = 7332.978903 C = 7664.382170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.549 5.549 5 C 0.061 3.939 6 C -0.105 4.105 7 C -0.076 4.076 8 C 0.066 3.934 9 N -0.684 5.684 10 C 0.192 3.808 11 H 0.024 0.976 12 C -0.168 4.168 13 C -0.593 4.593 14 H 0.020 0.980 15 C -0.018 4.018 16 N -0.936 5.936 17 Si 1.079 2.921 18 H -0.288 1.288 19 H -0.269 1.269 20 H -0.248 1.248 21 C -0.097 4.097 22 C 0.061 3.939 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.330 0.670 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.812 7.683 -11.377 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.274 5.274 5 C -0.067 4.067 6 C -0.143 4.143 7 C -0.095 4.095 8 C -0.063 4.063 9 N -0.314 5.314 10 C 0.082 3.918 11 H 0.042 0.958 12 C -0.228 4.228 13 C -0.631 4.631 14 H 0.038 0.962 15 C -0.216 4.216 16 N -0.572 5.572 17 Si 0.900 3.100 18 H -0.214 1.214 19 H -0.194 1.194 20 H -0.173 1.173 21 C -0.135 4.135 22 C -0.067 4.067 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.292 6.418 -12.514 23.874 hybrid contribution -1.228 1.289 2.069 2.730 sum -20.520 7.707 -10.444 24.280 Atomic orbital electron populations 1.21708 0.94442 1.02194 1.02116 1.21533 0.96312 0.95996 1.02061 1.22178 0.86307 0.97637 1.00976 1.61957 1.07980 1.22492 1.35007 1.22068 0.95078 0.88599 1.00961 1.21571 0.94495 1.01276 0.96999 1.21115 0.93222 0.96892 0.98275 1.22024 0.94413 0.97700 0.92179 1.60546 1.10777 1.54531 1.05549 1.19287 0.84955 0.92239 0.95342 0.95805 1.22661 1.01164 0.99032 0.99923 1.22135 0.95299 1.28202 1.17449 0.96210 1.27062 0.97453 0.93280 1.03847 1.70973 1.38707 1.47246 1.00263 0.83616 0.74673 0.78877 0.72812 1.21425 1.19448 1.17267 1.21410 0.93761 0.96804 1.01506 1.22074 0.95112 0.99686 0.89834 0.92155 0.92686 0.91995 0.91840 0.92720 0.95120 0.89915 0.95075 0.89366 0.90371 0.91546 0.92032 0.95369 0.92604 0.85347 0.93918 0.93822 0.93007 0.93846 0.92762 0.92488 0.95461 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.97 5.86 30.60 0.18 -1.79 16 3 C 0.06 0.97 4.96 86.30 0.43 1.39 16 4 N -0.55 -11.66 4.66 -896.34 -4.17 -15.84 16 5 C 0.06 1.16 5.46 86.33 0.47 1.63 16 6 C -0.11 -2.26 5.38 30.64 0.16 -2.09 16 7 C -0.08 -2.04 2.40 -10.72 -0.03 -2.06 16 8 C 0.07 2.16 4.88 86.30 0.42 2.58 16 9 N -0.68 -28.00 5.74 -495.45 -2.85 -30.84 16 10 C 0.19 9.05 2.17 44.17 0.10 9.15 16 11 H 0.02 1.14 6.37 -2.38 -0.02 1.13 16 12 C -0.17 -7.13 8.90 71.98 0.64 -6.49 16 13 C -0.59 -34.54 9.05 25.60 0.23 -34.31 16 14 H 0.02 1.28 8.06 -2.91 -0.02 1.26 16 15 C -0.02 -1.06 5.19 84.66 0.44 -0.62 16 16 N -0.94 -59.64 13.70 21.45 0.29 -59.35 16 17 Si 1.08 50.67 26.44 68.60 1.81 52.49 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.25 -10.35 6.15 99.48 0.61 -9.74 16 21 C -0.10 -2.77 5.24 30.65 0.16 -2.61 16 22 C 0.06 1.45 5.29 86.33 0.46 1.90 16 23 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 0.98 6.43 -2.39 -0.02 0.96 16 28 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 29 H 0.08 1.23 7.99 -2.38 -0.02 1.21 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.40 8.01 -2.38 -0.02 1.38 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 0.86 7.57 -2.39 -0.02 0.84 16 36 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 37 H 0.33 12.96 8.38 -89.69 -0.75 12.20 16 38 H 0.04 1.77 8.00 -2.39 -0.02 1.75 16 39 H 0.04 1.93 5.48 -2.39 -0.01 1.92 16 40 H 0.05 1.84 7.64 -2.38 -0.02 1.82 16 41 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.90 7.83 -2.39 -0.02 1.88 16 44 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.08 1.77 6.21 -2.39 -0.01 1.75 16 Total: -1.00 -64.76 339.90 -0.50 -65.26 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.04 Total: 22.72 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 4.38 Total: -34.44 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -6.73 Total: -106.03 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.49 kcal Total: -64.76 -0.50 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.683 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds