Wall clock time and date at job start Mon Mar 30 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 N 1.46890 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00048 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47111 * 185.19284 * 5 4 3 7 7 H 1.09006 * 109.46363 * 303.34431 * 6 5 4 8 8 C 1.53035 * 109.45820 * 63.31937 * 6 5 4 9 9 C 1.53120 * 109.28149 * 179.18886 * 8 6 5 10 10 C 1.53110 * 109.16086 * 302.34584 * 9 8 6 11 11 C 1.53043 * 109.28072 * 57.65401 * 10 9 8 12 12 N 1.46845 * 109.52145 * 300.82371 * 11 10 9 13 13 C 1.46900 * 110.99981 * 185.83747 * 12 11 10 14 14 C 1.53011 * 109.47029 * 51.61364 * 13 12 11 15 15 C 1.50697 * 109.46975 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00038 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47447 * 270.00756 * 19 17 15 21 21 H 1.48501 * 109.47216 * 30.00504 * 19 17 15 22 22 H 1.48501 * 109.47538 * 150.00287 * 19 17 15 23 23 H 1.09003 * 109.46943 * 299.99786 * 1 2 3 24 24 H 1.08990 * 109.47303 * 60.00141 * 1 2 3 25 25 H 1.08997 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47272 * 239.99784 * 2 1 3 27 27 H 1.08998 * 109.47488 * 120.00024 * 2 1 3 28 28 H 1.08994 * 109.47126 * 59.99616 * 3 2 1 29 29 H 1.09003 * 109.46595 * 299.99995 * 3 2 1 30 30 H 1.00906 * 111.00000 * 303.95248 * 4 3 2 31 31 H 1.08996 * 109.47299 * 65.19203 * 5 4 3 32 32 H 1.08996 * 109.47235 * 305.18928 * 5 4 3 33 33 H 1.08999 * 109.50255 * 299.13136 * 8 6 5 34 34 H 1.08998 * 109.50310 * 59.20705 * 8 6 5 35 35 H 1.09004 * 109.51771 * 62.25050 * 9 8 6 36 36 H 1.08998 * 109.52198 * 182.43761 * 9 8 6 37 37 H 1.09000 * 109.50433 * 177.58918 * 10 9 8 38 38 H 1.09003 * 109.50922 * 297.67536 * 10 9 8 39 39 H 1.09003 * 109.46283 * 180.80508 * 11 10 9 40 40 H 1.08998 * 109.45940 * 60.83488 * 11 10 9 41 41 H 1.08995 * 109.47309 * 291.61308 * 13 12 11 42 42 H 1.09003 * 109.47290 * 171.60775 * 13 12 11 43 43 H 1.08995 * 109.47122 * 59.99828 * 14 13 12 44 44 H 1.09003 * 109.46604 * 299.99831 * 14 13 12 45 45 H 0.96994 * 119.99653 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8139 -0.0013 6 6 5.5593 2.7751 -0.1324 7 1 5.9782 2.1738 0.6746 8 6 5.9395 2.1562 -1.4795 9 6 7.4645 2.1380 -1.6151 10 6 7.9983 3.5666 -1.4796 11 6 7.5585 4.1447 -0.1325 12 7 6.0923 4.1410 -0.0521 13 6 5.6303 4.8154 1.1685 14 6 6.2870 6.1938 1.2693 15 6 5.8126 6.8858 2.5211 16 1 5.1125 6.3922 3.1788 17 6 6.2724 8.1491 2.8268 18 7 7.1246 8.7505 2.0256 19 14 5.6838 9.0074 4.3781 20 1 4.4622 9.7953 4.0748 21 1 5.3733 7.9932 5.4174 22 1 6.7481 9.9158 4.8754 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.8709 0.9162 0.7806 31 1 3.7636 3.3079 0.9315 32 1 3.6125 3.3650 -0.8411 33 1 5.5572 1.1369 -1.5325 34 1 5.5088 2.7488 -2.2866 35 1 7.8924 1.5133 -0.8310 36 1 7.7386 1.7377 -2.5912 37 1 9.0869 3.5549 -1.5325 38 1 7.6012 4.1817 -2.2871 39 1 7.9249 5.1670 -0.0389 40 1 7.9680 3.5370 0.6745 41 1 5.9030 4.2186 2.0388 42 1 4.5471 4.9309 1.1320 43 1 6.0143 6.7906 0.3990 44 1 7.3703 6.0783 1.3058 45 1 7.4299 8.3051 1.2199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:38 Heat of formation + Delta-G solvation = -28.377472 kcal Electronic energy + Delta-G solvation = -19514.897141 eV Core-core repulsion = 16758.740819 eV Total energy + Delta-G solvation = -2756.156322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.18496 -36.65305 -34.37614 -33.43910 -32.55212 -30.53934 -28.78710 -26.49255 -24.65618 -23.93567 -23.03848 -21.58817 -20.83438 -20.35131 -19.29602 -16.80776 -16.14762 -15.58500 -15.21147 -14.72760 -14.39032 -14.10317 -13.91504 -13.69231 -13.38286 -13.17717 -13.06802 -12.73004 -12.45187 -11.97631 -11.94474 -11.79008 -11.55300 -11.27694 -11.10934 -10.93280 -10.87235 -10.71100 -10.55681 -10.36087 -10.13660 -10.06817 -9.86895 -9.44106 -8.56852 -8.40040 -8.29643 -7.73410 -6.35468 -4.04048 3.43454 3.47041 3.62674 3.94289 4.50207 4.62614 4.77547 4.88621 5.00918 5.05570 5.17065 5.21883 5.35149 5.37281 5.42411 5.53968 5.55193 5.59857 5.61506 5.77705 5.82157 5.86846 5.99430 6.00386 6.02584 6.09444 6.10746 6.14295 6.21712 6.28394 6.38709 6.41436 6.54591 6.65514 6.81906 6.96573 7.30528 7.33734 7.47513 7.70364 7.77388 8.25240 8.47276 8.89882 9.68077 11.05713 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.005046 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.547517 B = 5547.704106 C = 7153.276526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.689 5.689 5 C 0.062 3.938 6 C 0.091 3.909 7 H 0.030 0.970 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.117 4.117 11 C 0.055 3.945 12 N -0.535 5.535 13 C 0.068 3.932 14 C 0.010 3.990 15 C -0.603 4.603 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.071 2.929 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.284 1.284 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.336 0.664 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.017 0.983 42 H 0.065 0.935 43 H 0.016 0.984 44 H 0.010 0.990 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 -16.896 -5.931 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.071 4.071 4 N -0.320 5.320 5 C -0.067 4.067 6 C -0.018 4.018 7 H 0.048 0.952 8 C -0.137 4.137 9 C -0.159 4.159 10 C -0.155 4.155 11 C -0.073 4.073 12 N -0.261 5.261 13 C -0.059 4.059 14 C -0.027 4.027 15 C -0.641 4.641 16 H 0.065 0.935 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.900 3.100 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.210 1.210 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.279 -15.301 -6.132 17.639 hybrid contribution -0.053 -1.567 0.825 1.772 sum -6.332 -16.868 -5.307 18.782 Atomic orbital electron populations 1.21731 0.95669 1.01613 1.01906 1.21498 0.95503 0.96540 1.02410 1.21980 0.87723 0.96724 1.00667 1.60405 1.07135 1.14728 1.49701 1.22050 0.94657 0.88725 1.01276 1.21488 0.93526 0.89736 0.97053 0.95203 1.21488 0.94770 1.00698 0.96695 1.21606 0.96489 0.96928 1.00866 1.21611 0.99492 0.96108 0.98253 1.22123 0.87890 1.01696 0.95609 1.62004 1.08960 1.15198 1.39890 1.22203 0.99743 0.96494 0.87429 1.19325 0.95263 0.90777 0.97313 1.22026 1.29995 1.03750 1.08371 0.93518 1.25819 0.94866 0.95014 1.03107 1.70744 1.30171 1.40453 1.13540 0.83516 0.76137 0.75590 0.74793 1.21430 1.21596 1.20972 0.92822 0.92602 0.92662 0.91196 0.92311 0.95371 0.91031 0.84666 0.94474 0.90292 0.91008 0.91707 0.92808 0.92375 0.92173 0.91316 0.89477 0.95785 0.96482 0.91703 0.96607 0.97150 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.07 6.19 -26.73 -0.17 -1.23 16 3 C 0.06 0.62 5.68 -3.83 -0.02 0.60 16 4 N -0.69 -8.20 5.87 -113.79 -0.67 -8.87 16 5 C 0.06 0.90 4.78 -3.82 -0.02 0.88 16 6 C 0.09 1.40 2.11 -67.72 -0.14 1.26 16 7 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 8 C -0.10 -1.34 5.23 -26.65 -0.14 -1.47 16 9 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 10 C -0.12 -1.68 6.09 -26.65 -0.16 -1.85 16 11 C 0.05 0.97 5.03 -3.83 -0.02 0.95 16 12 N -0.54 -9.90 4.60 -226.68 -1.04 -10.95 16 13 C 0.07 1.48 4.38 -3.82 -0.02 1.46 16 14 C 0.01 0.27 3.78 -27.88 -0.11 0.17 16 15 C -0.60 -17.45 9.11 -34.44 -0.31 -17.77 16 16 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.30 13.65 55.43 0.76 -27.54 16 19 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.34 3.76 8.79 -39.29 -0.35 3.42 16 31 H 0.04 0.59 6.22 -51.93 -0.32 0.27 16 32 H 0.08 1.21 8.13 -51.93 -0.42 0.78 16 33 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.73 5.84 -51.93 -0.30 1.43 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.41 6.40 -51.93 -0.33 1.07 16 43 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 44 H 0.01 0.28 6.05 -51.93 -0.31 -0.03 16 45 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -30.11 343.34 -10.55 -40.66 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.70 Total: 0.10 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -0.99 Total: -19.15 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.95 Total: -47.36 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.11 -10.55 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds