Wall clock time and date at job start Mon Mar 30 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 N 1.46890 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00048 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47111 * 185.19284 * 5 4 3 7 7 H 1.09006 * 109.46363 * 303.34431 * 6 5 4 8 8 C 1.53035 * 109.45820 * 63.31937 * 6 5 4 9 9 C 1.53120 * 109.28149 * 179.18886 * 8 6 5 10 10 C 1.53110 * 109.16086 * 302.34584 * 9 8 6 11 11 C 1.53043 * 109.28072 * 57.65401 * 10 9 8 12 12 N 1.46845 * 109.52145 * 300.82371 * 11 10 9 13 13 C 1.46900 * 110.99981 * 185.83747 * 12 11 10 14 14 C 1.53011 * 109.47029 * 51.61364 * 13 12 11 15 15 C 1.50697 * 109.46975 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00038 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47447 * 270.00756 * 19 17 15 21 21 H 1.48501 * 109.47216 * 30.00504 * 19 17 15 22 22 H 1.48501 * 109.47538 * 150.00287 * 19 17 15 23 23 H 1.09003 * 109.46943 * 299.99786 * 1 2 3 24 24 H 1.08990 * 109.47303 * 60.00141 * 1 2 3 25 25 H 1.08997 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47272 * 239.99784 * 2 1 3 27 27 H 1.08998 * 109.47488 * 120.00024 * 2 1 3 28 28 H 1.08994 * 109.47126 * 59.99616 * 3 2 1 29 29 H 1.09003 * 109.46595 * 299.99995 * 3 2 1 30 30 H 1.00906 * 111.00000 * 303.95248 * 4 3 2 31 31 H 1.08996 * 109.47299 * 65.19203 * 5 4 3 32 32 H 1.08996 * 109.47235 * 305.18928 * 5 4 3 33 33 H 1.08999 * 109.50255 * 299.13136 * 8 6 5 34 34 H 1.08998 * 109.50310 * 59.20705 * 8 6 5 35 35 H 1.09004 * 109.51771 * 62.25050 * 9 8 6 36 36 H 1.08998 * 109.52198 * 182.43761 * 9 8 6 37 37 H 1.09000 * 109.50433 * 177.58918 * 10 9 8 38 38 H 1.09003 * 109.50922 * 297.67536 * 10 9 8 39 39 H 1.09003 * 109.46283 * 180.80508 * 11 10 9 40 40 H 1.08998 * 109.45940 * 60.83488 * 11 10 9 41 41 H 1.08995 * 109.47309 * 291.61308 * 13 12 11 42 42 H 1.09003 * 109.47290 * 171.60775 * 13 12 11 43 43 H 1.08995 * 109.47122 * 59.99828 * 14 13 12 44 44 H 1.09003 * 109.46604 * 299.99831 * 14 13 12 45 45 H 0.96994 * 119.99653 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8139 -0.0013 6 6 5.5593 2.7751 -0.1324 7 1 5.9782 2.1738 0.6746 8 6 5.9395 2.1562 -1.4795 9 6 7.4645 2.1380 -1.6151 10 6 7.9983 3.5666 -1.4796 11 6 7.5585 4.1447 -0.1325 12 7 6.0923 4.1410 -0.0521 13 6 5.6303 4.8154 1.1685 14 6 6.2870 6.1938 1.2693 15 6 5.8126 6.8858 2.5211 16 1 5.1125 6.3922 3.1788 17 6 6.2724 8.1491 2.8268 18 7 7.1246 8.7505 2.0256 19 14 5.6838 9.0074 4.3781 20 1 4.4622 9.7953 4.0748 21 1 5.3733 7.9932 5.4174 22 1 6.7481 9.9158 4.8754 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.8709 0.9162 0.7806 31 1 3.7636 3.3079 0.9315 32 1 3.6125 3.3650 -0.8411 33 1 5.5572 1.1369 -1.5325 34 1 5.5088 2.7488 -2.2866 35 1 7.8924 1.5133 -0.8310 36 1 7.7386 1.7377 -2.5912 37 1 9.0869 3.5549 -1.5325 38 1 7.6012 4.1817 -2.2871 39 1 7.9249 5.1670 -0.0389 40 1 7.9680 3.5370 0.6745 41 1 5.9030 4.2186 2.0388 42 1 4.5471 4.9309 1.1320 43 1 6.0143 6.7906 0.3990 44 1 7.3703 6.0783 1.3058 45 1 7.4299 8.3051 1.2199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:37 Heat of formation + Delta-G solvation = -47.528832 kcal Electronic energy + Delta-G solvation = -19515.727607 eV Core-core repulsion = 16758.740819 eV Total energy + Delta-G solvation = -2756.986787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54449 -37.65062 -36.21970 -34.51931 -34.21483 -31.66589 -30.64032 -27.55551 -26.43787 -25.11050 -24.66884 -22.51349 -22.20233 -21.79476 -20.59986 -18.96513 -17.22178 -16.90493 -16.50633 -15.83327 -15.66405 -15.60754 -15.40082 -15.15547 -14.77217 -14.55101 -14.26784 -14.09235 -13.71603 -13.42624 -13.20259 -13.00594 -12.85454 -12.70286 -12.44978 -12.15867 -12.07115 -11.95904 -11.91470 -11.87562 -11.61346 -11.54701 -11.13256 -11.05126 -10.73983 -10.55092 -9.46023 -9.25963 -8.72764 -6.42989 1.49827 1.59430 1.77136 2.52664 2.75364 3.12979 3.33531 3.77899 3.87137 3.93737 4.05584 4.10677 4.17473 4.29384 4.33272 4.35909 4.45468 4.49123 4.53749 4.58592 4.66578 4.77598 4.81504 4.87806 4.88538 4.90993 4.93633 5.06208 5.10305 5.17781 5.21904 5.25615 5.29525 5.32950 5.38419 5.39930 5.51249 5.84226 5.95337 6.13065 6.18087 6.25358 6.39203 6.55072 7.39270 8.68428 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.005046 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.547517 B = 5547.704106 C = 7153.276526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.058 3.942 4 N -0.681 5.681 5 C 0.072 3.928 6 C 0.091 3.909 7 H 0.029 0.971 8 C -0.091 4.091 9 C -0.116 4.116 10 C -0.111 4.111 11 C 0.054 3.946 12 N -0.541 5.541 13 C 0.086 3.914 14 C 0.018 3.982 15 C -0.622 4.622 16 H 0.048 0.952 17 C -0.037 4.037 18 N -0.935 5.935 19 Si 1.121 2.879 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.280 1.280 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.343 0.657 31 H 0.017 0.983 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.011 0.989 42 H 0.063 0.937 43 H -0.011 1.011 44 H -0.004 1.004 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 -18.696 -5.876 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.072 4.072 4 N -0.312 5.312 5 C -0.058 4.058 6 C -0.017 4.017 7 H 0.047 0.953 8 C -0.128 4.128 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.074 4.074 12 N -0.267 5.267 13 C -0.041 4.041 14 C -0.020 4.020 15 C -0.660 4.660 16 H 0.066 0.934 17 C -0.234 4.234 18 N -0.572 5.572 19 Si 0.942 3.058 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.206 1.206 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.007 0.993 44 H 0.014 0.986 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.014 -17.138 -6.099 19.496 hybrid contribution 0.178 -1.040 0.768 1.305 sum -6.836 -18.178 -5.331 20.139 Atomic orbital electron populations 1.21724 0.94805 1.02393 1.01870 1.21443 0.96181 0.94936 1.02686 1.22043 0.86787 0.98152 1.00171 1.60400 1.07979 1.12900 1.49941 1.21859 0.94095 0.90033 0.99829 1.21598 0.93941 0.87726 0.98457 0.95294 1.21445 0.95506 1.01096 0.94790 1.21597 0.95619 0.95602 1.02547 1.21583 1.00654 0.97065 0.95539 1.22120 0.87345 1.00096 0.97871 1.61983 1.09615 1.17351 1.37736 1.21839 0.99129 0.94323 0.88840 1.19181 0.94623 0.92852 0.95306 1.22447 1.29940 1.04345 1.09248 0.93371 1.27460 0.94134 0.96163 1.05663 1.70881 1.31740 1.40813 1.13806 0.82893 0.76294 0.75249 0.71380 1.19655 1.19461 1.20589 0.93002 0.92543 0.91478 0.91072 0.91819 0.96033 0.91409 0.83935 0.96457 0.91208 0.89348 0.92375 0.92181 0.89841 0.90392 0.91865 0.92673 0.96039 0.97104 0.91837 0.99258 0.98583 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.11 -1.79 6.19 30.59 0.19 -1.60 16 3 C 0.06 1.16 5.68 86.30 0.49 1.65 16 4 N -0.68 -15.25 5.87 -513.92 -3.02 -18.26 16 5 C 0.07 2.04 4.78 86.30 0.41 2.45 16 6 C 0.09 2.74 2.11 44.94 0.09 2.83 16 7 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 8 C -0.09 -2.26 5.23 30.65 0.16 -2.10 16 9 C -0.12 -2.66 6.00 30.67 0.18 -2.48 16 10 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 11 C 0.05 1.93 5.03 86.33 0.43 2.37 16 12 N -0.54 -20.32 4.60 -871.08 -4.01 -24.33 16 13 C 0.09 3.85 4.38 86.31 0.38 4.23 16 14 C 0.02 0.96 3.78 29.85 0.11 1.07 16 15 C -0.62 -36.74 9.11 25.60 0.23 -36.51 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 18 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 19 Si 1.12 51.26 29.90 68.60 2.05 53.31 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.34 7.07 8.79 -89.69 -0.79 6.28 16 31 H 0.02 0.56 6.22 -2.39 -0.01 0.54 16 32 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 33 H 0.09 1.96 7.73 -2.39 -0.02 1.94 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 2.31 5.84 -2.39 -0.01 2.30 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 2.83 6.40 -2.39 -0.02 2.81 16 43 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 44 H 0.00 -0.23 6.05 -2.39 -0.01 -0.24 16 45 H 0.26 16.49 7.22 -92.71 -0.67 15.82 16 Total: -1.00 -65.63 343.34 -0.39 -66.02 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.23 Total: 16.33 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.05 Total: -34.00 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -6.73 Total: -101.66 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -65.63 -0.39 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.496 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds