Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47384 * 56.05844 * 3 2 1 5 5 C 1.50699 * 109.46837 * 176.05756 * 3 2 1 6 6 H 1.08001 * 119.99977 * 120.00077 * 5 3 2 7 7 C 1.37877 * 120.00253 * 299.99925 * 5 3 2 8 8 N 1.31517 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00297 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47040 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47422 * 119.99946 * 9 7 5 12 12 H 1.48506 * 109.47170 * 239.99918 * 9 7 5 13 13 N 1.46897 * 109.47197 * 296.05672 * 3 2 1 14 14 C 1.46897 * 111.00326 * 144.02549 * 13 3 2 15 15 H 1.09005 * 108.91638 * 328.43246 * 14 13 3 16 16 C 1.45879 * 108.93686 * 87.13567 * 14 13 3 17 17 C 1.54312 * 112.18448 * 181.82146 * 16 14 13 18 18 C 1.50451 * 108.49925 * 281.46138 * 17 16 14 19 19 N 1.47999 * 112.81962 * 93.72735 * 18 17 16 20 20 C 1.46906 * 110.99848 * 191.34390 * 19 18 17 21 21 C 1.52991 * 109.47106 * 293.95567 * 20 19 18 22 22 C 1.47999 * 114.63652 * 318.09374 * 19 18 17 23 23 C 1.50516 * 112.74885 * 318.08981 * 22 19 18 24 24 H 1.08998 * 109.47498 * 185.15109 * 1 2 3 25 25 H 1.09006 * 109.47088 * 305.14562 * 1 2 3 26 26 H 1.09003 * 109.47110 * 65.14669 * 1 2 3 27 27 H 1.08998 * 109.46714 * 239.99838 * 2 1 3 28 28 H 1.09007 * 109.46451 * 120.00327 * 2 1 3 29 29 H 0.96996 * 120.00478 * 180.02562 * 8 7 5 30 30 H 1.00905 * 110.99729 * 267.97908 * 13 3 2 31 31 H 1.08999 * 108.94117 * 302.51745 * 16 14 13 32 32 H 1.08997 * 108.94021 * 61.13054 * 16 14 13 33 33 H 1.08993 * 109.63247 * 41.16746 * 17 16 14 34 34 H 1.09001 * 109.63444 * 161.56383 * 17 16 14 35 35 H 1.08994 * 108.81314 * 214.59258 * 18 17 16 36 36 H 1.09002 * 108.80976 * 332.98579 * 18 17 16 37 37 H 1.08997 * 109.47033 * 53.96267 * 20 19 18 38 38 H 1.09002 * 109.46756 * 173.95565 * 20 19 18 39 39 H 1.08992 * 109.47490 * 299.99868 * 21 20 19 40 40 H 1.09002 * 109.47314 * 60.00340 * 21 20 19 41 41 H 1.09007 * 109.47187 * 180.02562 * 21 20 19 42 42 H 1.08995 * 108.81241 * 78.95188 * 22 19 18 43 43 H 1.09000 * 108.81746 * 197.34002 * 22 19 18 44 44 H 1.09001 * 109.71307 * 334.10202 * 23 22 19 45 45 H 1.09000 * 109.58280 * 213.48753 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6202 1.9763 0.8525 5 6 3.5438 1.4435 0.0977 6 1 4.1356 1.8928 -0.6861 7 6 4.1643 0.8708 1.1877 8 7 3.4437 0.3241 2.1424 9 14 6.0283 0.8727 1.3091 10 1 6.6014 1.5450 0.1155 11 1 6.4438 1.6006 2.5350 12 1 6.5216 -0.5266 1.3731 13 7 1.6297 2.1069 -1.2442 14 6 1.3023 3.5186 -1.0039 15 1 0.8978 3.6212 0.0031 16 6 2.5224 4.3117 -1.1071 17 6 2.2709 5.8073 -0.8223 18 6 1.6632 6.4313 -2.0490 19 7 0.1838 6.4500 -2.0106 20 6 -0.3722 6.8129 -3.3210 21 6 0.0016 8.2593 -3.6507 22 6 -0.4357 5.2078 -1.4972 23 6 0.2316 3.9648 -2.0215 24 1 -0.3634 -1.0235 0.0923 25 1 -0.3633 0.5916 0.8404 26 1 -0.3633 0.4319 -0.9325 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8801 -0.0785 2.9094 30 1 2.3411 2.0164 -1.9540 31 1 3.2520 3.9331 -0.3913 32 1 2.9286 4.2067 -2.1130 33 1 1.5852 5.9097 0.0187 34 1 3.2148 6.2991 -0.5871 35 1 2.0255 7.4554 -2.1386 36 1 1.9833 5.8677 -2.9253 37 1 0.0340 6.1495 -4.0845 38 1 -1.4575 6.7151 -3.2948 39 1 -0.4047 8.9227 -2.8874 40 1 1.0869 8.3572 -3.6769 41 1 -0.4114 8.5288 -4.6229 42 1 -0.3743 5.2082 -0.4089 43 1 -1.4857 5.1918 -1.7894 44 1 0.7039 4.1776 -2.9805 45 1 -0.5101 3.1752 -2.1425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083422603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = -10.730936 kcal Electronic energy + Delta-G solvation = -20330.107774 eV Core-core repulsion = 17574.716663 eV Total energy + Delta-G solvation = -2755.391111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37136 -36.51691 -34.17447 -32.19506 -31.60680 -30.93855 -28.82937 -26.23651 -25.54573 -23.82810 -22.48722 -22.14435 -20.12728 -19.49709 -19.08731 -16.54923 -16.13323 -15.58687 -14.75206 -14.64611 -14.31895 -13.78313 -13.69763 -13.22365 -12.83649 -12.67473 -12.61898 -12.09826 -12.03842 -11.88694 -11.68437 -11.30562 -11.27091 -11.15167 -10.96807 -10.85401 -10.70063 -10.52435 -10.43456 -10.18302 -10.16095 -9.94080 -9.55467 -9.26421 -8.96342 -8.38116 -8.04251 -7.21271 -6.00416 -4.12046 3.24850 3.33814 3.36330 3.96694 4.38526 4.93250 4.99774 5.15461 5.21504 5.26076 5.34335 5.39083 5.46938 5.59548 5.66567 5.72401 5.83750 5.91155 5.94960 6.06436 6.08652 6.18825 6.25390 6.32238 6.37673 6.42464 6.52602 6.55661 6.61031 6.73826 6.82068 7.01055 7.16555 7.19504 7.25847 7.33877 7.50403 7.61071 7.78464 8.11291 8.16371 8.37893 8.70025 9.02325 9.55026 11.00267 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.005696 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.149022 B = 4914.236568 C = 5732.874578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.028 0.972 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.688 5.688 14 C 0.099 3.901 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.119 4.119 18 C 0.067 3.933 19 N -0.552 5.552 20 C 0.054 3.946 21 C -0.148 4.148 22 C 0.061 3.939 23 C -0.135 4.135 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 10.693 -8.123 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.046 0.954 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.316 5.316 14 C -0.011 4.011 15 H 0.084 0.916 16 C -0.186 4.186 17 C -0.158 4.158 18 C -0.060 4.060 19 N -0.277 5.277 20 C -0.074 4.074 21 C -0.206 4.206 22 C -0.066 4.066 23 C -0.175 4.175 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.693 10.702 -7.572 14.720 hybrid contribution 2.291 -0.345 -0.291 2.335 sum -4.402 10.358 -7.863 13.729 Atomic orbital electron populations 1.21682 0.99155 0.98170 1.00233 1.21501 0.91950 0.99457 1.01489 1.19207 0.92790 0.91143 0.86066 0.95405 1.21879 0.92507 1.37655 1.05790 0.92716 1.24931 0.97830 0.95043 0.95734 1.69889 1.34758 1.38034 1.09569 0.86635 0.86275 0.77747 0.77900 1.19950 1.21079 1.21001 1.60994 1.47510 1.10845 1.12300 1.20388 0.93663 0.89278 0.97786 0.91642 1.21438 1.00452 0.94562 1.02103 1.21385 1.00345 0.96173 0.97864 1.21776 0.86493 0.99867 0.97824 1.61935 1.06287 1.33820 1.25696 1.22040 0.99430 0.96062 0.89865 1.21793 1.01523 0.96451 1.00787 1.21893 0.97175 0.86968 1.00584 1.21949 0.99291 0.97458 0.98787 0.95788 0.94601 0.93536 0.95151 0.89390 0.92978 0.85667 0.89775 0.93224 0.90993 0.91719 0.91776 0.95054 0.95228 0.91204 0.92064 0.92832 0.92766 0.90860 0.91937 0.92952 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.67 16 3 C 0.22 5.21 1.98 -68.87 -0.14 5.07 16 4 H 0.03 0.75 7.19 -51.93 -0.37 0.38 16 5 C -0.54 -14.10 7.23 -34.44 -0.25 -14.35 16 6 H 0.05 1.43 7.32 -52.49 -0.38 1.04 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.74 11.30 55.43 0.63 -24.11 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.69 -14.03 5.54 -103.81 -0.58 -14.61 16 14 C 0.10 1.77 2.04 -70.40 -0.14 1.63 16 15 H 0.07 1.29 6.61 -51.93 -0.34 0.95 16 16 C -0.15 -2.52 4.41 -29.41 -0.13 -2.65 16 17 C -0.12 -1.74 5.63 -27.32 -0.15 -1.89 16 18 C 0.07 0.89 4.47 -4.49 -0.02 0.87 16 19 N -0.55 -7.13 4.68 -235.86 -1.10 -8.23 16 20 C 0.05 0.60 5.60 -3.83 -0.02 0.58 16 21 C -0.15 -1.41 9.84 37.15 0.37 -1.04 16 22 C 0.06 0.83 5.16 -4.46 -0.02 0.81 16 23 C -0.14 -2.04 5.19 -27.29 -0.14 -2.18 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.33 6.76 7.76 -39.29 -0.30 6.46 16 31 H 0.08 1.71 6.47 -51.93 -0.34 1.38 16 32 H 0.05 0.84 7.43 -51.93 -0.39 0.45 16 33 H 0.07 1.10 7.08 -51.93 -0.37 0.73 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 36 H 0.03 0.43 6.36 -51.93 -0.33 0.10 16 37 H 0.03 0.34 7.82 -51.93 -0.41 -0.06 16 38 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.52 6.79 -51.93 -0.35 0.17 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.06 6.58 -51.93 -0.34 0.72 16 43 H 0.06 0.77 7.56 -51.93 -0.39 0.37 16 44 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -26.35 329.97 -9.88 -36.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.25 Total: 6.40 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.53 Total: -16.55 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.05 Total: -46.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.35 -9.88 -36.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083422603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.495 kcal (2) G-P(sol) polarization free energy of solvation -26.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds