Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 H 1.08997 * 109.47037 * 57.38097 * 3 2 1 5 5 C 1.50692 * 109.47206 * 177.39009 * 3 2 1 6 6 H 1.08000 * 120.00213 * 118.14939 * 5 3 2 7 7 C 1.37885 * 119.99890 * 298.14838 * 5 3 2 8 8 N 1.31514 * 119.99817 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99854 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46677 * 90.00015 * 9 7 5 11 11 H 1.48496 * 109.46711 * 210.00021 * 9 7 5 12 12 H 1.48501 * 109.47001 * 330.00319 * 9 7 5 13 13 N 1.46907 * 109.46785 * 297.38874 * 3 2 1 14 14 C 1.46907 * 110.99751 * 179.36840 * 13 3 2 15 15 C 1.52993 * 109.46829 * 199.12832 * 14 13 3 16 16 C 1.46899 * 110.99867 * 303.31901 * 13 3 2 17 17 C 1.53001 * 109.47209 * 260.98008 * 16 13 3 18 18 C 1.52997 * 109.47098 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47055 * 60.00094 * 18 17 16 20 20 N 1.46898 * 109.47031 * 60.00230 * 19 18 17 21 21 C 1.53001 * 109.47090 * 299.99911 * 19 18 17 22 22 C 1.52997 * 109.47098 * 60.00115 * 21 19 18 23 23 H 1.08998 * 109.47525 * 185.02631 * 1 2 3 24 24 H 1.08998 * 109.46874 * 305.02744 * 1 2 3 25 25 H 1.09004 * 109.47127 * 65.01979 * 1 2 3 26 26 H 1.08999 * 109.46980 * 240.00193 * 2 1 3 27 27 H 1.08994 * 109.47027 * 119.99612 * 2 1 3 28 28 H 0.97005 * 119.99416 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46820 * 79.13258 * 14 13 3 30 30 H 1.08998 * 109.46931 * 319.13134 * 14 13 3 31 31 H 1.08996 * 109.47436 * 293.20820 * 15 14 13 32 32 H 1.09001 * 109.47087 * 53.20997 * 15 14 13 33 33 H 1.09001 * 109.47060 * 173.20563 * 15 14 13 34 34 H 1.08996 * 109.47315 * 20.98551 * 16 13 3 35 35 H 1.08996 * 109.47426 * 300.00475 * 17 16 13 36 36 H 1.09007 * 109.47098 * 60.00443 * 17 16 13 37 37 H 1.09004 * 109.47407 * 299.99830 * 18 17 16 38 38 H 1.08999 * 109.46970 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47230 * 179.97438 * 19 18 17 40 40 H 1.00899 * 111.00022 * 60.00147 * 20 19 18 41 41 H 1.00896 * 110.99856 * 183.95248 * 20 19 18 42 42 H 1.08995 * 109.46902 * 299.99758 * 21 19 18 43 43 H 1.09003 * 109.46634 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.46970 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.46700 * 59.99972 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6389 1.9697 0.8656 5 6 3.5456 1.4430 0.0647 6 1 4.1207 1.8718 -0.7426 7 6 4.1890 0.8959 1.1546 8 7 5.5029 0.8959 1.2109 9 14 3.1942 0.1548 2.5514 10 1 2.9581 -1.2860 2.2806 11 1 3.9430 0.3030 3.8251 12 1 1.8909 0.8585 2.6585 13 7 1.6025 2.1165 -1.2298 14 6 2.0624 3.5115 -1.2577 15 6 1.2255 4.3042 -2.2636 16 6 2.0595 1.3877 -2.4206 17 6 3.3203 2.0546 -2.9742 18 6 3.7958 1.2959 -4.2148 19 6 2.6971 1.3195 -5.2793 20 7 2.3963 2.7109 -5.6417 21 6 1.4362 0.6526 -4.7257 22 6 0.9607 1.4113 -3.4851 23 1 -0.3634 -1.0237 0.0900 24 1 -0.3633 0.5898 0.8415 25 1 -0.3633 0.4340 -0.9316 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 5.9555 0.5113 1.9779 29 1 3.1111 3.5424 -1.5532 30 1 1.9511 3.9506 -0.2663 31 1 1.4295 3.9423 -3.2713 32 1 0.1670 4.1741 -2.0381 33 1 1.4836 5.3612 -2.1980 34 1 2.2828 0.3554 -2.1514 35 1 3.0970 3.0869 -3.2434 36 1 4.1030 2.0381 -2.2156 37 1 4.0191 0.2634 -3.9459 38 1 4.6943 1.7708 -4.6089 39 1 3.0360 0.7794 -6.1633 40 1 3.2138 3.1734 -6.0103 41 1 1.6294 2.7565 -6.2958 42 1 1.6595 -0.3798 -4.4569 43 1 0.6534 0.6699 -5.4840 44 1 0.0622 0.9365 -3.0910 45 1 0.7375 2.4438 -3.7541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085870834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = 8.110264 kcal Electronic energy + Delta-G solvation = -21418.823961 eV Core-core repulsion = 18664.249865 eV Total energy + Delta-G solvation = -2754.574095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43590 -36.60264 -33.43928 -31.91783 -31.53298 -30.22451 -29.06370 -27.60605 -25.94352 -23.11595 -22.13105 -21.63875 -20.48056 -19.08290 -18.30189 -16.92609 -15.61363 -15.47320 -15.27537 -14.47994 -14.34143 -13.82893 -13.32730 -13.11896 -12.78220 -12.52736 -12.33621 -11.91689 -11.85481 -11.66351 -11.58523 -11.39601 -11.28247 -11.10745 -10.89792 -10.65725 -10.49713 -10.30491 -9.98350 -9.90908 -9.68406 -9.62341 -9.41250 -9.07593 -8.67626 -8.50329 -8.39327 -6.98162 -6.04942 -4.04875 3.29544 3.40700 3.43371 4.43218 4.66674 4.97819 5.14821 5.24117 5.26502 5.45721 5.78698 5.82308 5.94769 5.97714 6.04176 6.07670 6.09447 6.15194 6.20815 6.24633 6.28704 6.33481 6.39821 6.49217 6.61956 6.68126 6.72434 6.76238 6.85307 6.87944 6.89732 6.97681 7.03273 7.14797 7.24520 7.32790 7.36091 7.41635 7.59630 7.69544 8.33434 8.38776 8.55105 9.02742 9.59640 11.06808 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.007991 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.844713 B = 3502.979771 C = 3705.480127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.179 3.821 4 H 0.036 0.964 5 C -0.545 4.545 6 H 0.090 0.910 7 C 0.073 3.927 8 N -0.900 5.900 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.521 5.521 14 C 0.055 3.945 15 C -0.154 4.154 16 C 0.096 3.904 17 C -0.145 4.145 18 C -0.109 4.109 19 C 0.094 3.906 20 N -0.837 5.837 21 C -0.111 4.111 22 C -0.104 4.104 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.022 0.978 40 H 0.336 0.664 41 H 0.334 0.666 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 1.462 -11.345 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.071 3.929 4 H 0.054 0.946 5 C -0.584 4.584 6 H 0.108 0.892 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.244 5.244 14 C -0.074 4.074 15 C -0.211 4.211 16 C -0.013 4.013 17 C -0.183 4.183 18 C -0.147 4.147 19 C -0.017 4.017 20 N -0.367 5.367 21 C -0.150 4.150 22 C -0.142 4.142 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.123 1.510 -10.433 13.308 hybrid contribution 0.880 -0.933 -0.064 1.284 sum -7.243 0.577 -10.497 12.766 Atomic orbital electron populations 1.21727 0.97454 0.98963 1.01766 1.22015 0.94006 0.99645 1.00486 1.19795 0.94150 0.90086 0.88859 0.94620 1.22027 0.90568 1.39269 1.06496 0.89248 1.25002 0.94627 0.95398 0.97908 1.69918 1.07553 1.45850 1.30548 0.86926 0.80549 0.79716 0.81609 1.20707 1.22700 1.18880 1.62453 1.58237 1.01396 1.02266 1.21954 0.97822 0.89335 0.98244 1.22041 1.00150 0.98061 1.00873 1.21490 0.91774 0.98362 0.89685 1.22405 0.99356 1.00245 0.96258 1.21535 0.96197 1.00822 0.96173 1.21324 0.96195 0.88264 0.95966 1.58674 1.11328 1.16286 1.50369 1.21566 0.96046 0.99141 0.98231 1.21616 0.97933 1.01101 0.93505 0.95094 0.93915 0.92049 0.92113 0.93712 0.92861 0.93147 0.92657 0.90960 0.93246 0.94233 0.90903 0.90476 0.89974 0.92136 0.93210 0.96038 0.85219 0.85450 0.92169 0.93136 0.93112 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.71 37.16 0.36 -2.26 16 2 C -0.12 -2.69 4.71 -26.73 -0.13 -2.82 16 3 C 0.18 4.14 1.33 -68.86 -0.09 4.05 16 4 H 0.04 0.89 6.98 -51.93 -0.36 0.53 16 5 C -0.55 -14.55 7.88 -34.44 -0.27 -14.82 16 6 H 0.09 2.53 4.13 -52.49 -0.22 2.31 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 9 Si 0.88 21.99 24.48 -169.99 -4.16 17.82 16 10 H -0.28 -6.87 6.85 56.52 0.39 -6.49 16 11 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.26 -6.37 6.49 56.52 0.37 -6.01 16 13 N -0.52 -10.42 3.79 -220.10 -0.83 -11.25 16 14 C 0.05 1.06 4.55 -3.82 -0.02 1.04 16 15 C -0.15 -2.47 8.86 37.15 0.33 -2.14 16 16 C 0.10 1.76 1.48 -67.71 -0.10 1.66 16 17 C -0.14 -2.63 3.45 -26.73 -0.09 -2.72 16 18 C -0.11 -1.69 5.61 -26.73 -0.15 -1.84 16 19 C 0.09 1.20 3.57 -67.71 -0.24 0.96 16 20 N -0.84 -9.43 7.72 -4.67 -0.04 -9.47 16 21 C -0.11 -1.49 5.57 -26.73 -0.15 -1.63 16 22 C -0.10 -1.61 5.13 -26.73 -0.14 -1.74 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.09 7.29 -51.93 -0.38 0.71 16 26 H 0.06 1.31 5.78 -51.93 -0.30 1.01 16 27 H 0.04 1.04 3.48 -51.93 -0.18 0.86 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.05 1.05 4.72 -51.93 -0.25 0.81 16 30 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 31 H 0.07 1.14 4.64 -51.93 -0.24 0.90 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.51 5.19 -51.93 -0.27 1.24 16 35 H 0.08 1.36 4.42 -51.93 -0.23 1.13 16 36 H 0.08 1.83 4.66 -51.93 -0.24 1.59 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.34 3.42 9.04 -39.29 -0.36 3.06 16 41 H 0.33 3.19 8.99 -39.29 -0.35 2.84 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.81 7.61 -51.93 -0.39 0.41 16 45 H 0.08 1.21 4.79 -51.93 -0.25 0.96 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -28.24 308.91 -7.81 -36.05 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.42 Total: 8.83 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.78 Total: -20.31 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.10 Total: -47.04 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.16 Total: 17.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.24 -7.81 -36.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085870834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.160 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds