Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 H 1.08997 * 109.47037 * 57.38097 * 3 2 1 5 5 C 1.50692 * 109.47206 * 177.39009 * 3 2 1 6 6 H 1.08000 * 120.00213 * 118.14939 * 5 3 2 7 7 C 1.37885 * 119.99890 * 298.14838 * 5 3 2 8 8 N 1.31514 * 119.99817 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99854 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46677 * 90.00015 * 9 7 5 11 11 H 1.48496 * 109.46711 * 210.00021 * 9 7 5 12 12 H 1.48501 * 109.47001 * 330.00319 * 9 7 5 13 13 N 1.46907 * 109.46785 * 297.38874 * 3 2 1 14 14 C 1.46907 * 110.99751 * 179.36840 * 13 3 2 15 15 C 1.52993 * 109.46829 * 199.12832 * 14 13 3 16 16 C 1.46899 * 110.99867 * 303.31901 * 13 3 2 17 17 C 1.53001 * 109.47209 * 260.98008 * 16 13 3 18 18 C 1.52997 * 109.47098 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47055 * 60.00094 * 18 17 16 20 20 N 1.46898 * 109.47031 * 60.00230 * 19 18 17 21 21 C 1.53001 * 109.47090 * 299.99911 * 19 18 17 22 22 C 1.52997 * 109.47098 * 60.00115 * 21 19 18 23 23 H 1.08998 * 109.47525 * 185.02631 * 1 2 3 24 24 H 1.08998 * 109.46874 * 305.02744 * 1 2 3 25 25 H 1.09004 * 109.47127 * 65.01979 * 1 2 3 26 26 H 1.08999 * 109.46980 * 240.00193 * 2 1 3 27 27 H 1.08994 * 109.47027 * 119.99612 * 2 1 3 28 28 H 0.97005 * 119.99416 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46820 * 79.13258 * 14 13 3 30 30 H 1.08998 * 109.46931 * 319.13134 * 14 13 3 31 31 H 1.08996 * 109.47436 * 293.20820 * 15 14 13 32 32 H 1.09001 * 109.47087 * 53.20997 * 15 14 13 33 33 H 1.09001 * 109.47060 * 173.20563 * 15 14 13 34 34 H 1.08996 * 109.47315 * 20.98551 * 16 13 3 35 35 H 1.08996 * 109.47426 * 300.00475 * 17 16 13 36 36 H 1.09007 * 109.47098 * 60.00443 * 17 16 13 37 37 H 1.09004 * 109.47407 * 299.99830 * 18 17 16 38 38 H 1.08999 * 109.46970 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47230 * 179.97438 * 19 18 17 40 40 H 1.00899 * 111.00022 * 60.00147 * 20 19 18 41 41 H 1.00896 * 110.99856 * 183.95248 * 20 19 18 42 42 H 1.08995 * 109.46902 * 299.99758 * 21 19 18 43 43 H 1.09003 * 109.46634 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.46970 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.46700 * 59.99972 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6389 1.9697 0.8656 5 6 3.5456 1.4430 0.0647 6 1 4.1207 1.8718 -0.7426 7 6 4.1890 0.8959 1.1546 8 7 5.5029 0.8959 1.2109 9 14 3.1942 0.1548 2.5514 10 1 2.9581 -1.2860 2.2806 11 1 3.9430 0.3030 3.8251 12 1 1.8909 0.8585 2.6585 13 7 1.6025 2.1165 -1.2298 14 6 2.0624 3.5115 -1.2577 15 6 1.2255 4.3042 -2.2636 16 6 2.0595 1.3877 -2.4206 17 6 3.3203 2.0546 -2.9742 18 6 3.7958 1.2959 -4.2148 19 6 2.6971 1.3195 -5.2793 20 7 2.3963 2.7109 -5.6417 21 6 1.4362 0.6526 -4.7257 22 6 0.9607 1.4113 -3.4851 23 1 -0.3634 -1.0237 0.0900 24 1 -0.3633 0.5898 0.8415 25 1 -0.3633 0.4340 -0.9316 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 5.9555 0.5113 1.9779 29 1 3.1111 3.5424 -1.5532 30 1 1.9511 3.9506 -0.2663 31 1 1.4295 3.9423 -3.2713 32 1 0.1670 4.1741 -2.0381 33 1 1.4836 5.3612 -2.1980 34 1 2.2828 0.3554 -2.1514 35 1 3.0970 3.0869 -3.2434 36 1 4.1030 2.0381 -2.2156 37 1 4.0191 0.2634 -3.9459 38 1 4.6943 1.7708 -4.6089 39 1 3.0360 0.7794 -6.1633 40 1 3.2138 3.1734 -6.0103 41 1 1.6294 2.7565 -6.2958 42 1 1.6595 -0.3798 -4.4569 43 1 0.6534 0.6699 -5.4840 44 1 0.0622 0.9365 -3.0910 45 1 0.7375 2.4438 -3.7541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085870834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -11.742332 kcal Electronic energy + Delta-G solvation = -21419.684834 eV Core-core repulsion = 18664.249865 eV Total energy + Delta-G solvation = -2755.434968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91127 -38.01005 -35.13797 -33.92216 -32.75248 -31.54023 -30.57177 -29.07830 -27.61441 -24.71022 -23.70692 -23.02732 -22.07702 -20.51804 -19.82226 -18.86439 -17.25655 -16.79521 -16.48585 -16.14328 -15.79301 -15.25238 -15.05894 -14.59219 -14.27781 -14.10260 -13.79777 -13.69379 -13.30946 -13.15844 -13.04455 -12.83048 -12.70564 -12.65300 -12.51828 -12.22283 -11.90226 -11.83299 -11.75624 -11.46754 -11.30938 -11.22663 -11.07755 -10.65021 -10.58252 -10.41260 -9.32764 -8.70077 -8.24739 -6.27083 1.28164 1.34050 1.43569 2.33323 3.09576 3.38743 3.77425 3.98293 4.04747 4.20475 4.39213 4.41708 4.46261 4.54116 4.59604 4.67995 4.73692 4.78205 4.81953 4.85844 4.90433 4.98445 5.04511 5.11018 5.19286 5.20702 5.24096 5.27221 5.33441 5.38378 5.44467 5.50944 5.52617 5.57135 5.61863 5.69735 5.81143 5.95225 6.35703 6.42898 6.58061 6.73913 6.81817 6.88650 7.41450 8.89699 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.007991 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.844713 B = 3502.979771 C = 3705.480127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.182 3.818 4 H 0.021 0.979 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.937 3.063 10 H -0.271 1.271 11 H -0.304 1.304 12 H -0.250 1.250 13 N -0.512 5.512 14 C 0.054 3.946 15 C -0.139 4.139 16 C 0.098 3.902 17 C -0.133 4.133 18 C -0.109 4.109 19 C 0.103 3.897 20 N -0.842 5.842 21 C -0.109 4.109 22 C -0.094 4.094 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.343 0.657 41 H 0.348 0.652 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 1.417 -13.129 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.039 0.961 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.765 3.235 10 H -0.198 1.198 11 H -0.232 1.232 12 H -0.174 1.174 13 N -0.234 5.234 14 C -0.075 4.075 15 C -0.196 4.196 16 C -0.011 4.011 17 C -0.171 4.171 18 C -0.148 4.148 19 C -0.008 4.008 20 N -0.374 5.374 21 C -0.148 4.148 22 C -0.131 4.131 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.906 1.472 -12.244 16.463 hybrid contribution 1.807 -0.846 0.426 2.040 sum -9.099 0.626 -11.819 14.928 Atomic orbital electron populations 1.21631 0.94392 1.00641 1.02264 1.21921 0.96691 0.97829 0.99638 1.19673 0.91489 0.91519 0.90036 0.96102 1.22401 0.92755 1.37104 1.05221 0.91745 1.25754 0.95379 0.96468 1.00583 1.70060 1.09310 1.48083 1.31528 0.86018 0.79584 0.79467 0.78434 1.19766 1.23177 1.17415 1.62582 1.57548 1.01578 1.01717 1.21993 0.97445 0.89511 0.98520 1.21899 0.99664 0.98307 0.99723 1.21528 0.93149 0.96488 0.89890 1.22192 0.97756 1.01141 0.96049 1.21520 0.97787 0.99422 0.96037 1.21149 0.94756 0.89547 0.95362 1.58579 1.12348 1.15152 1.51292 1.21568 0.96958 0.98475 0.97783 1.21512 0.96481 1.01914 0.93240 0.92740 0.93883 0.91156 0.92412 0.95174 0.93060 0.95423 0.94337 0.90292 0.92464 0.92612 0.93446 0.89803 0.95093 0.93622 0.92779 0.94170 0.84361 0.83768 0.92635 0.90318 0.92937 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.71 71.98 0.70 -3.84 16 2 C -0.12 -5.26 4.71 30.60 0.14 -5.11 16 3 C 0.18 8.48 1.33 44.17 0.06 8.54 16 4 H 0.02 1.05 6.98 -2.39 -0.02 1.03 16 5 C -0.54 -29.81 7.88 25.60 0.20 -29.61 16 6 H 0.06 3.90 4.13 -2.91 -0.01 3.88 16 7 C 0.02 0.89 5.45 84.66 0.46 1.35 16 8 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 9 Si 0.94 46.18 24.48 68.60 1.68 47.86 16 10 H -0.27 -12.89 6.85 99.48 0.68 -12.21 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 12 H -0.25 -11.64 6.49 99.48 0.65 -10.99 16 13 N -0.51 -20.36 3.79 -850.27 -3.22 -23.58 16 14 C 0.05 2.09 4.55 86.30 0.39 2.48 16 15 C -0.14 -4.15 8.86 71.98 0.64 -3.51 16 16 C 0.10 3.57 1.48 44.92 0.07 3.63 16 17 C -0.13 -4.94 3.45 30.59 0.11 -4.83 16 18 C -0.11 -3.35 5.61 30.59 0.17 -3.17 16 19 C 0.10 2.36 3.57 44.92 0.16 2.52 16 20 N -0.84 -16.20 7.72 -168.68 -1.30 -17.50 16 21 C -0.11 -2.56 5.57 30.59 0.17 -2.39 16 22 C -0.09 -2.66 5.13 30.59 0.16 -2.50 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 2.29 7.29 -2.38 -0.02 2.27 16 26 H 0.06 2.48 5.78 -2.39 -0.01 2.47 16 27 H 0.03 1.37 3.48 -2.39 -0.01 1.36 16 28 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 29 H 0.03 1.20 4.72 -2.39 -0.01 1.19 16 30 H 0.04 1.60 7.89 -2.39 -0.02 1.58 16 31 H 0.08 2.27 4.64 -2.39 -0.01 2.25 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.99 5.19 -2.39 -0.01 1.97 16 35 H 0.08 2.95 4.42 -2.39 -0.01 2.94 16 36 H 0.03 1.47 4.66 -2.38 -0.01 1.46 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.34 5.97 9.04 -89.69 -0.81 5.16 16 41 H 0.35 5.19 8.99 -89.70 -0.81 4.38 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.49 7.61 -2.39 -0.02 1.48 16 45 H 0.08 2.30 4.79 -2.39 -0.01 2.28 16 Total: -1.00 -63.48 308.91 0.18 -63.31 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.70 Total: 25.75 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.43 Total: -36.45 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.23 Total: -100.48 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.68 Total: 47.86 kcal Total: -63.48 0.18 -63.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085870834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.565 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds