Wall clock time and date at job start Mon Mar 30 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47256 * 2 1 4 4 H 1.09002 * 109.46952 * 195.80284 * 3 2 1 5 5 C 1.50693 * 109.47108 * 315.80808 * 3 2 1 6 6 H 1.08008 * 119.99954 * 115.57596 * 5 3 2 7 7 C 1.37877 * 120.00053 * 295.57062 * 5 3 2 8 8 N 1.31508 * 120.00134 * 354.15737 * 7 5 3 9 9 Si 1.86803 * 119.99785 * 174.15544 * 7 5 3 10 10 H 1.48493 * 109.47180 * 270.00287 * 9 7 5 11 11 H 1.48500 * 109.47191 * 30.00624 * 9 7 5 12 12 H 1.48501 * 109.46969 * 150.00071 * 9 7 5 13 13 N 1.46906 * 109.46906 * 75.81286 * 3 2 1 14 14 C 1.46905 * 110.99385 * 302.11447 * 13 3 2 15 15 C 1.53006 * 109.46848 * 200.87167 * 14 13 3 16 16 C 1.46891 * 111.00257 * 66.06845 * 13 3 2 17 17 C 1.52994 * 109.47213 * 88.91949 * 16 13 3 18 18 C 1.53125 * 109.52003 * 295.48963 * 17 16 13 19 19 C 1.53040 * 109.27760 * 182.44304 * 18 17 16 20 20 N 1.46841 * 109.52360 * 59.18170 * 19 18 17 21 21 C 1.46853 * 111.19809 * 298.25645 * 20 19 18 22 22 C 1.53034 * 109.52311 * 61.74445 * 21 20 19 23 23 H 1.08998 * 109.46852 * 50.38702 * 1 2 3 24 24 H 1.08996 * 109.47101 * 170.39177 * 1 2 3 25 25 H 1.09000 * 109.46897 * 290.39607 * 1 2 3 26 26 H 1.09000 * 109.46898 * 240.00005 * 2 1 3 27 27 H 1.08996 * 109.47077 * 120.00487 * 2 1 3 28 28 H 0.97004 * 119.99781 * 354.72625 * 8 7 5 29 29 H 1.08999 * 109.47431 * 320.86767 * 14 13 3 30 30 H 1.08995 * 109.47530 * 80.87209 * 14 13 3 31 31 H 1.08992 * 109.47253 * 184.69220 * 15 14 13 32 32 H 1.08998 * 109.46880 * 304.69580 * 15 14 13 33 33 H 1.09005 * 109.46881 * 64.69125 * 15 14 13 34 34 H 1.09001 * 109.47064 * 208.91897 * 16 13 3 35 35 H 1.09002 * 109.47231 * 328.91145 * 16 13 3 36 36 H 1.08994 * 109.52634 * 55.68425 * 17 16 13 37 37 H 1.08997 * 109.50663 * 302.38445 * 18 17 16 38 38 H 1.08998 * 109.49819 * 62.50680 * 18 17 16 39 39 H 1.09004 * 109.45942 * 299.16408 * 19 18 17 40 40 H 1.08996 * 109.46426 * 179.20229 * 19 18 17 41 41 H 1.00895 * 111.00030 * 62.35466 * 20 19 18 42 42 H 1.08999 * 109.46599 * 301.72774 * 21 20 19 43 43 H 1.09001 * 109.45073 * 181.75590 * 21 20 19 44 44 H 1.08998 * 109.50617 * 180.88034 * 22 21 20 45 45 H 1.09001 * 109.50393 * 60.75566 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.0934 1.4554 -0.2799 5 6 1.2471 2.2557 -0.9903 6 1 0.6263 3.0699 -0.6465 7 6 1.3140 1.9603 -2.3355 8 7 2.1555 1.0464 -2.7669 9 14 0.2094 2.8584 -3.5450 10 1 -1.0657 2.1130 -3.6984 11 1 -0.0739 4.2245 -3.0364 12 1 0.8899 2.9517 -4.8616 13 7 1.8832 2.0173 1.3428 14 6 0.4799 1.9704 1.7748 15 6 0.2533 2.9989 2.8847 16 6 2.7550 1.3389 2.3110 17 6 4.1176 2.0339 2.3448 18 6 4.8057 1.8773 0.9859 19 6 6.1927 2.5213 1.0447 20 7 6.9900 1.8744 2.0945 21 6 6.3732 2.0522 3.4153 22 6 4.9916 1.3942 3.4273 23 1 -0.3633 0.6552 -0.7917 24 1 -0.3633 -1.0132 -0.1715 25 1 -0.3633 0.3582 0.9632 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.7821 0.6349 -2.1514 29 1 -0.1685 2.1997 0.9292 30 1 0.2484 0.9737 2.1503 31 1 -0.7648 2.9072 3.2627 32 1 0.9595 2.8199 3.6955 33 1 0.4041 4.0023 2.4865 34 1 2.3008 1.3813 3.3010 35 1 2.8853 0.2978 2.0155 36 1 3.9812 3.0925 2.5653 37 1 4.9060 0.8182 0.7486 38 1 4.2089 2.3682 0.2172 39 1 6.0909 3.5833 1.2684 40 1 6.6910 2.3992 0.0830 41 1 7.1315 0.8965 1.8902 42 1 6.2705 3.1163 3.6279 43 1 7.0027 1.5891 4.1752 44 1 4.5275 1.5399 4.4027 45 1 5.0948 0.3275 3.2283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086703228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:42 Heat of formation + Delta-G solvation = -13.721613 kcal Electronic energy + Delta-G solvation = -20974.822707 eV Core-core repulsion = 18219.301910 eV Total energy + Delta-G solvation = -2755.520796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68974 -38.99273 -35.43147 -33.68421 -32.60236 -31.84340 -30.64231 -28.27465 -26.13623 -25.90303 -23.83366 -23.21263 -22.11504 -21.14744 -20.80859 -18.75392 -17.14941 -16.62070 -16.31002 -15.96296 -15.59816 -15.56389 -15.20501 -14.70380 -14.68889 -14.30624 -14.03582 -13.86481 -13.35520 -13.19034 -12.98454 -12.84040 -12.64114 -12.55425 -12.43361 -12.26491 -12.16373 -11.96422 -11.87862 -11.73353 -11.47342 -11.29694 -11.24318 -11.03496 -10.51540 -10.22513 -9.28369 -8.74845 -8.45546 -6.12079 1.53873 1.60657 1.77240 2.60103 3.26109 3.31824 3.42335 3.78731 3.96958 4.08958 4.20090 4.22916 4.32015 4.38828 4.42162 4.47936 4.53254 4.56070 4.64556 4.69746 4.74786 4.81012 4.89382 4.97990 4.99899 5.03305 5.06264 5.08228 5.18621 5.19922 5.28731 5.32867 5.33788 5.46972 5.52743 5.54799 5.65903 6.06455 6.08254 6.22611 6.46409 6.63800 6.67307 6.91189 7.60001 8.91119 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.007379 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.925798 B = 3793.692229 C = 4482.953332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.193 3.807 4 H 0.034 0.966 5 C -0.568 4.568 6 H 0.043 0.957 7 C -0.023 4.023 8 N -0.940 5.940 9 Si 1.100 2.900 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.290 1.290 13 N -0.529 5.529 14 C 0.049 3.951 15 C -0.136 4.136 16 C 0.054 3.946 17 C -0.066 4.066 18 C -0.145 4.145 19 C 0.065 3.935 20 N -0.688 5.688 21 C 0.061 3.939 22 C -0.143 4.143 23 H 0.052 0.948 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.258 0.742 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.342 0.658 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 0.665 13.031 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.085 3.915 4 H 0.052 0.948 5 C -0.607 4.607 6 H 0.061 0.939 7 C -0.221 4.221 8 N -0.578 5.578 9 Si 0.925 3.075 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.216 1.216 13 N -0.252 5.252 14 C -0.079 4.079 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.086 4.086 18 C -0.184 4.184 19 C -0.065 4.065 20 N -0.316 5.316 21 C -0.069 4.069 22 C -0.182 4.182 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.160 0.840 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.216 1.794 11.501 12.076 hybrid contribution -0.634 -1.811 0.957 2.144 sum 2.582 -0.017 12.458 12.723 Atomic orbital electron populations 1.22191 0.95857 0.99289 1.03040 1.22080 0.97319 1.00839 0.97896 1.19643 0.96342 0.89007 0.86460 0.94841 1.22056 1.28588 1.16880 0.93142 0.93887 1.26695 0.99347 0.96810 0.99289 1.70861 1.20534 1.27405 1.39040 0.83129 0.74783 0.75434 0.74167 1.20472 1.20090 1.21623 1.62165 1.06021 1.54949 1.02072 1.22436 0.90493 0.96848 0.98096 1.21767 1.01213 0.98834 0.97577 1.22251 0.94166 0.95205 0.95756 1.21017 0.93459 0.99741 0.94350 1.22358 0.98029 0.99584 0.98462 1.21911 0.90814 0.98631 0.95160 1.60729 1.48596 1.19835 1.02452 1.22049 0.92655 1.01165 0.91014 1.22236 0.97350 0.99710 0.98944 0.92944 0.95341 0.90657 0.95387 0.94470 0.93163 0.91573 0.94949 0.91339 0.92568 0.93549 0.90919 0.95891 0.91791 0.94273 0.92628 0.91305 0.91380 0.84026 0.91131 0.88945 0.90168 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 8.44 71.98 0.61 -5.71 16 2 C -0.14 -6.50 5.10 30.59 0.16 -6.35 16 3 C 0.19 9.14 1.48 44.17 0.07 9.21 16 4 H 0.03 1.74 3.84 -2.39 -0.01 1.74 16 5 C -0.57 -30.23 5.90 25.60 0.15 -30.08 16 6 H 0.04 2.35 6.88 -2.91 -0.02 2.33 16 7 C -0.02 -1.26 4.88 84.66 0.41 -0.85 16 8 N -0.94 -55.52 13.10 21.45 0.28 -55.24 16 9 Si 1.10 50.24 29.91 68.60 2.05 52.29 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 N -0.53 -21.19 4.17 -875.39 -3.65 -24.84 16 14 C 0.05 1.78 3.41 86.30 0.29 2.08 16 15 C -0.14 -4.02 10.06 71.98 0.72 -3.29 16 16 C 0.05 1.83 4.26 86.30 0.37 2.19 16 17 C -0.07 -2.01 2.47 -10.71 -0.03 -2.04 16 18 C -0.15 -4.97 4.00 30.65 0.12 -4.84 16 19 C 0.06 1.88 6.55 86.33 0.57 2.44 16 20 N -0.69 -16.80 6.87 -514.01 -3.53 -20.33 16 21 C 0.06 1.28 6.55 86.32 0.57 1.84 16 22 C -0.14 -3.27 5.36 30.65 0.16 -3.11 16 23 H 0.05 2.53 6.12 -2.39 -0.01 2.51 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 2.89 4.04 -2.39 -0.01 2.88 16 26 H 0.03 1.43 6.48 -2.39 -0.02 1.41 16 27 H 0.04 1.57 5.95 -2.39 -0.01 1.55 16 28 H 0.26 15.39 5.88 -92.71 -0.55 14.84 16 29 H 0.07 2.76 5.14 -2.39 -0.01 2.75 16 30 H 0.03 1.14 5.91 -2.39 -0.01 1.13 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.51 6.89 -2.39 -0.02 1.49 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 2.16 6.56 -2.39 -0.02 2.14 16 35 H 0.02 0.83 5.76 -2.39 -0.01 0.82 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.40 8.11 -2.39 -0.02 1.38 16 38 H 0.06 2.39 5.61 -2.39 -0.01 2.38 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.34 7.83 8.86 -89.70 -0.79 7.04 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -59.08 317.28 -0.28 -59.35 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.40 Total: 27.26 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.17 Total: -38.49 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -6.90 Total: -100.41 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -59.08 -0.28 -59.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.631 kcal (2) G-P(sol) polarization free energy of solvation -59.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds