Wall clock time and date at job start Mon Mar 30 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47027 * 2 1 4 4 H 1.09001 * 109.47202 * 55.00178 * 3 2 1 5 5 C 1.52993 * 109.47083 * 175.00108 * 3 2 1 6 6 N 1.46896 * 109.47171 * 295.00153 * 3 2 1 7 7 C 1.46955 * 111.00246 * 303.79989 * 6 3 2 8 8 C 1.53049 * 109.36716 * 176.81294 * 7 6 3 9 9 H 1.09003 * 109.48699 * 298.43327 * 8 7 6 10 10 C 1.50703 * 109.49076 * 178.36838 * 8 7 6 11 11 H 1.08000 * 120.00044 * 240.10785 * 10 8 7 12 12 C 1.37872 * 119.99634 * 60.10735 * 10 8 7 13 13 N 1.31518 * 120.00421 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99662 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47189 * 120.00123 * 14 12 10 17 17 H 1.48498 * 109.47039 * 240.00173 * 14 12 10 18 18 N 1.46961 * 109.36292 * 58.39846 * 8 7 6 19 19 C 1.46906 * 110.99734 * 176.81247 * 18 8 7 20 20 C 1.46952 * 110.88410 * 300.67960 * 18 8 7 21 21 C 1.53001 * 109.49116 * 179.28818 * 20 18 8 22 22 C 1.52998 * 109.49132 * 299.35513 * 20 18 8 23 23 C 1.46961 * 110.99735 * 179.97438 * 6 3 2 24 24 H 1.09003 * 109.46825 * 299.99897 * 1 2 3 25 25 H 1.08999 * 109.47097 * 59.99767 * 1 2 3 26 26 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46825 * 240.00103 * 2 1 3 28 28 H 1.08999 * 109.47097 * 120.00233 * 2 1 3 29 29 H 1.09001 * 109.47506 * 60.00236 * 5 3 2 30 30 H 1.09003 * 109.47764 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47181 * 300.00249 * 5 3 2 32 32 H 1.09008 * 109.48713 * 296.78155 * 7 6 3 33 33 H 1.09002 * 109.48661 * 56.82117 * 7 6 3 34 34 H 0.96998 * 119.99880 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46544 * 183.80202 * 19 18 8 36 36 H 1.09001 * 109.47272 * 303.79809 * 19 18 8 37 37 H 1.09000 * 109.47033 * 63.80258 * 19 18 8 38 38 H 1.08995 * 109.47196 * 60.00029 * 21 20 18 39 39 H 1.08991 * 109.47021 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.46706 * 300.00410 * 21 20 18 41 41 H 1.09002 * 109.47345 * 59.99521 * 22 20 18 42 42 H 1.09000 * 109.47250 * 179.97438 * 22 20 18 43 43 H 1.09003 * 109.46851 * 300.00161 * 22 20 18 44 44 H 1.09003 * 109.48904 * 63.22353 * 23 6 3 45 45 H 1.08989 * 109.49349 * 303.15552 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0993 -1.2552 7 6 2.1450 1.3478 -2.4176 8 6 1.6530 2.0190 -3.7021 9 1 0.5633 2.0056 -3.7250 10 6 2.1907 1.2739 -4.8965 11 1 2.8215 1.7820 -5.6109 12 6 1.8773 -0.0565 -5.0773 13 7 1.1087 -0.6752 -4.2077 14 14 2.5443 -0.9803 -6.5576 15 1 3.3767 -0.0648 -7.3786 16 1 3.3727 -2.1230 -6.0958 17 1 1.4133 -1.4874 -7.3754 18 7 2.1271 3.4096 -3.7375 19 6 1.7384 4.0665 -4.9928 20 6 1.6335 4.1612 -2.5751 21 6 2.1593 5.5967 -2.6346 22 6 0.1036 4.1765 -2.5893 23 6 2.1250 3.4900 -1.2904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9995 0.9054 -0.7161 30 1 3.9283 2.4720 0.1252 31 1 3.8532 0.9570 1.0570 32 1 3.2350 1.3369 -2.4075 33 1 1.7707 0.3250 -2.3750 34 1 0.8886 -1.6113 -4.3348 35 1 2.1589 5.0716 -5.0221 36 1 2.1164 3.4897 -5.8369 37 1 0.6515 4.1255 -5.0505 38 1 1.8104 6.0739 -3.5503 39 1 1.7934 6.1536 -1.7721 40 1 3.2492 5.5851 -2.6235 41 1 -0.2705 3.1536 -2.5460 42 1 -0.2622 4.7336 -1.7268 43 1 -0.2464 4.6528 -3.5051 44 1 3.2147 3.5039 -1.2672 45 1 1.7358 4.0287 -0.4266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221767329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:16 Heat of formation + Delta-G solvation = 10.862454 kcal Electronic energy + Delta-G solvation = -21482.779369 eV Core-core repulsion = 18728.324618 eV Total energy + Delta-G solvation = -2754.454751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44054 -36.60303 -33.57439 -32.09431 -31.14705 -29.30336 -27.24816 -26.68629 -25.69765 -25.06832 -23.39167 -21.99542 -20.98476 -18.79826 -17.25764 -16.52873 -15.35641 -15.19263 -14.53033 -14.21111 -13.93576 -13.39654 -13.36544 -13.19275 -13.06201 -12.62253 -12.34806 -12.18709 -11.73230 -11.69156 -11.30810 -11.26583 -11.03568 -11.00624 -10.90077 -10.70895 -10.59137 -10.47737 -10.37550 -10.15583 -10.00358 -9.86742 -9.80008 -9.23725 -8.82145 -8.43931 -7.34383 -6.98697 -6.01657 -4.05233 3.28951 3.37466 3.41653 4.40176 4.73957 5.01450 5.28551 5.34845 5.44823 5.61799 5.69902 5.76325 5.79524 5.90844 6.00591 6.07584 6.09206 6.14779 6.18107 6.24485 6.29737 6.30642 6.40594 6.46824 6.50739 6.54175 6.57710 6.59642 6.73550 6.84523 6.89359 6.93347 7.03098 7.05713 7.13209 7.49149 7.69663 7.81499 8.03369 8.09631 8.24577 8.39684 8.69616 9.03061 9.59476 11.04616 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.010575 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.729908 B = 2646.995425 C = 3795.720074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.084 3.916 4 H 0.066 0.934 5 C -0.185 4.185 6 N -0.531 5.531 7 C 0.061 3.939 8 C 0.220 3.780 9 H 0.013 0.987 10 C -0.505 4.505 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.888 5.888 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 N -0.530 5.530 19 C 0.033 3.967 20 C 0.106 3.894 21 C -0.136 4.136 22 C -0.167 4.167 23 C 0.073 3.927 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.116 0.884 34 H 0.260 0.740 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.014 0.986 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 5.967 6.938 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.025 4.025 4 H 0.084 0.916 5 C -0.244 4.244 6 N -0.255 5.255 7 C -0.066 4.066 8 C 0.113 3.887 9 H 0.031 0.969 10 C -0.544 4.544 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.527 5.527 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 N -0.255 5.255 19 C -0.115 4.115 20 C 0.015 3.985 21 C -0.194 4.194 22 C -0.226 4.226 23 C -0.056 4.056 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.134 0.866 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.413 5.770 6.965 9.054 hybrid contribution 0.399 -0.561 -0.730 1.004 sum 0.812 5.209 6.235 8.165 Atomic orbital electron populations 1.21576 0.95483 1.00324 1.01959 1.21614 0.96780 0.95465 1.01624 1.21629 0.92359 0.95393 0.93149 0.91594 1.22464 0.98814 1.01487 1.01629 1.62524 1.59097 1.01364 1.02506 1.22592 0.96067 1.00329 0.87562 1.19293 0.94270 0.82028 0.93061 0.96926 1.21207 1.30551 0.95080 1.07565 0.91853 1.24922 0.95081 0.97548 0.96462 1.69885 1.36594 1.10937 1.35285 0.86519 0.78690 0.79797 0.82876 1.19837 1.21115 1.21166 1.62440 1.59079 1.04049 0.99950 1.22265 0.97406 0.97705 0.94137 1.20991 0.92629 0.92752 0.92119 1.21861 1.01169 0.95595 1.00824 1.22313 0.97312 1.03140 0.99800 1.22032 0.97341 0.90310 0.95933 0.94318 0.90913 0.94055 0.90536 0.93223 0.92001 0.92965 0.93222 0.96671 0.86649 0.93021 0.93713 0.90813 0.96759 0.92687 0.93278 0.92535 0.90598 0.93857 0.93806 0.94861 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.80 37.16 0.36 -1.93 16 2 C -0.12 -2.00 5.10 -26.73 -0.14 -2.14 16 3 C 0.08 1.42 2.43 -67.72 -0.16 1.26 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.19 -2.96 8.50 37.15 0.32 -2.65 16 6 N -0.53 -10.38 3.51 -226.49 -0.79 -11.17 16 7 C 0.06 1.43 3.88 -3.77 -0.01 1.41 16 8 C 0.22 5.42 1.56 -68.80 -0.11 5.31 16 9 H 0.01 0.36 6.35 -51.93 -0.33 0.03 16 10 C -0.50 -13.52 7.88 -34.44 -0.27 -13.79 16 11 H 0.06 1.72 6.46 -52.49 -0.34 1.38 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 13 N -0.89 -24.31 11.35 55.43 0.63 -23.68 16 14 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 N -0.53 -11.42 4.54 -220.45 -1.00 -12.42 16 19 C 0.03 0.66 8.54 60.07 0.51 1.18 16 20 C 0.11 1.95 0.68 -131.54 -0.09 1.86 16 21 C -0.14 -2.10 8.14 37.16 0.30 -1.80 16 22 C -0.17 -3.04 7.65 37.16 0.28 -2.76 16 23 C 0.07 1.32 3.84 -3.76 -0.01 1.30 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.52 6.00 -51.93 -0.31 1.21 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.11 6.56 -51.93 -0.34 0.77 16 30 H 0.05 0.81 6.48 -51.93 -0.34 0.48 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.37 6.57 -51.92 -0.34 0.03 16 33 H 0.12 2.92 3.94 -51.93 -0.20 2.72 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.04 0.77 6.25 -51.93 -0.32 0.45 16 36 H 0.07 1.57 6.16 -51.93 -0.32 1.25 16 37 H 0.01 0.28 6.39 -51.93 -0.33 -0.05 16 38 H 0.05 0.82 6.36 -51.93 -0.33 0.49 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.60 5.94 -51.93 -0.31 1.29 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.78 6.48 -51.93 -0.34 0.44 16 44 H 0.03 0.63 6.48 -51.93 -0.34 0.29 16 45 H 0.06 0.94 8.14 -51.94 -0.42 0.52 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -26.61 319.30 -8.32 -34.93 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.83 Total: 2.75 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 0.89 Total: -11.19 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.17 Total: -47.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.61 -8.32 -34.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221767329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.790 kcal (2) G-P(sol) polarization free energy of solvation -26.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds