Wall clock time and date at job start Mon Mar 30 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47027 * 2 1 4 4 H 1.09001 * 109.47202 * 55.00178 * 3 2 1 5 5 C 1.52993 * 109.47083 * 175.00108 * 3 2 1 6 6 N 1.46896 * 109.47171 * 295.00153 * 3 2 1 7 7 C 1.46955 * 111.00246 * 303.79989 * 6 3 2 8 8 C 1.53049 * 109.36716 * 176.81294 * 7 6 3 9 9 H 1.09003 * 109.48699 * 298.43327 * 8 7 6 10 10 C 1.50703 * 109.49076 * 178.36838 * 8 7 6 11 11 H 1.08000 * 120.00044 * 240.10785 * 10 8 7 12 12 C 1.37872 * 119.99634 * 60.10735 * 10 8 7 13 13 N 1.31518 * 120.00421 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99662 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47189 * 120.00123 * 14 12 10 17 17 H 1.48498 * 109.47039 * 240.00173 * 14 12 10 18 18 N 1.46961 * 109.36292 * 58.39846 * 8 7 6 19 19 C 1.46906 * 110.99734 * 176.81247 * 18 8 7 20 20 C 1.46952 * 110.88410 * 300.67960 * 18 8 7 21 21 C 1.53001 * 109.49116 * 179.28818 * 20 18 8 22 22 C 1.52998 * 109.49132 * 299.35513 * 20 18 8 23 23 C 1.46961 * 110.99735 * 179.97438 * 6 3 2 24 24 H 1.09003 * 109.46825 * 299.99897 * 1 2 3 25 25 H 1.08999 * 109.47097 * 59.99767 * 1 2 3 26 26 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46825 * 240.00103 * 2 1 3 28 28 H 1.08999 * 109.47097 * 120.00233 * 2 1 3 29 29 H 1.09001 * 109.47506 * 60.00236 * 5 3 2 30 30 H 1.09003 * 109.47764 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47181 * 300.00249 * 5 3 2 32 32 H 1.09008 * 109.48713 * 296.78155 * 7 6 3 33 33 H 1.09002 * 109.48661 * 56.82117 * 7 6 3 34 34 H 0.96998 * 119.99880 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46544 * 183.80202 * 19 18 8 36 36 H 1.09001 * 109.47272 * 303.79809 * 19 18 8 37 37 H 1.09000 * 109.47033 * 63.80258 * 19 18 8 38 38 H 1.08995 * 109.47196 * 60.00029 * 21 20 18 39 39 H 1.08991 * 109.47021 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.46706 * 300.00410 * 21 20 18 41 41 H 1.09002 * 109.47345 * 59.99521 * 22 20 18 42 42 H 1.09000 * 109.47250 * 179.97438 * 22 20 18 43 43 H 1.09003 * 109.46851 * 300.00161 * 22 20 18 44 44 H 1.09003 * 109.48904 * 63.22353 * 23 6 3 45 45 H 1.08989 * 109.49349 * 303.15552 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0993 -1.2552 7 6 2.1450 1.3478 -2.4176 8 6 1.6530 2.0190 -3.7021 9 1 0.5633 2.0056 -3.7250 10 6 2.1907 1.2739 -4.8965 11 1 2.8215 1.7820 -5.6109 12 6 1.8773 -0.0565 -5.0773 13 7 1.1087 -0.6752 -4.2077 14 14 2.5443 -0.9803 -6.5576 15 1 3.3767 -0.0648 -7.3786 16 1 3.3727 -2.1230 -6.0958 17 1 1.4133 -1.4874 -7.3754 18 7 2.1271 3.4096 -3.7375 19 6 1.7384 4.0665 -4.9928 20 6 1.6335 4.1612 -2.5751 21 6 2.1593 5.5967 -2.6346 22 6 0.1036 4.1765 -2.5893 23 6 2.1250 3.4900 -1.2904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9995 0.9054 -0.7161 30 1 3.9283 2.4720 0.1252 31 1 3.8532 0.9570 1.0570 32 1 3.2350 1.3369 -2.4075 33 1 1.7707 0.3250 -2.3750 34 1 0.8886 -1.6113 -4.3348 35 1 2.1589 5.0716 -5.0221 36 1 2.1164 3.4897 -5.8369 37 1 0.6515 4.1255 -5.0505 38 1 1.8104 6.0739 -3.5503 39 1 1.7934 6.1536 -1.7721 40 1 3.2492 5.5851 -2.6235 41 1 -0.2705 3.1536 -2.5460 42 1 -0.2622 4.7336 -1.7268 43 1 -0.2464 4.6528 -3.5051 44 1 3.2147 3.5039 -1.2672 45 1 1.7358 4.0287 -0.4266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221767329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:16 Heat of formation + Delta-G solvation = -5.605149 kcal Electronic energy + Delta-G solvation = -21483.493458 eV Core-core repulsion = 18728.324618 eV Total energy + Delta-G solvation = -2755.168840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02315 -38.09048 -35.46769 -33.60508 -32.91610 -30.75081 -28.91367 -28.08092 -27.26101 -26.93729 -24.86735 -23.48733 -22.77535 -20.26358 -18.88080 -18.47747 -17.10282 -16.80465 -16.17482 -15.83506 -15.58313 -14.98687 -14.89185 -14.68333 -14.49101 -14.09988 -13.96740 -13.69536 -13.35615 -13.19377 -12.91036 -12.76059 -12.65174 -12.54342 -12.45500 -12.31566 -12.08966 -11.97765 -11.94703 -11.83819 -11.76934 -11.41798 -11.35701 -10.90245 -10.67104 -10.47044 -8.93860 -8.71325 -8.07820 -6.18571 1.39165 1.41876 1.52548 2.42533 3.12946 3.32475 3.44781 3.94557 4.03084 4.25791 4.29200 4.33345 4.40464 4.58015 4.58463 4.67843 4.71749 4.73483 4.78817 4.85573 4.89051 4.89638 4.98325 5.00554 5.04726 5.09950 5.15597 5.16970 5.22657 5.25644 5.34721 5.41384 5.42933 5.55862 5.59725 5.67556 5.78046 5.86172 6.26716 6.37518 6.49217 6.66222 6.89719 6.98168 7.49778 8.96801 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.010575 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.729908 B = 2646.995425 C = 3795.720074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 C 0.081 3.919 4 H 0.091 0.909 5 C -0.176 4.176 6 N -0.537 5.537 7 C 0.084 3.916 8 C 0.229 3.771 9 H -0.026 1.026 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.018 3.982 13 N -0.909 5.909 14 Si 0.952 3.048 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.541 5.541 19 C 0.038 3.962 20 C 0.097 3.903 21 C -0.128 4.128 22 C -0.156 4.156 23 C 0.072 3.928 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.075 0.925 32 H -0.010 1.010 33 H 0.091 0.909 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.009 0.991 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.028 0.972 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 7.427 8.470 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C -0.028 4.028 4 H 0.109 0.891 5 C -0.235 4.235 6 N -0.260 5.260 7 C -0.044 4.044 8 C 0.121 3.879 9 H -0.009 1.009 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.181 4.181 13 N -0.548 5.548 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.266 5.266 19 C -0.110 4.110 20 C 0.007 3.993 21 C -0.186 4.186 22 C -0.215 4.215 23 C -0.056 4.056 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.009 0.991 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.823 7.249 8.506 11.206 hybrid contribution 0.239 -0.989 -1.167 1.549 sum 1.062 6.260 7.338 9.704 Atomic orbital electron populations 1.21483 0.95349 1.00437 1.01297 1.21581 0.96836 0.95654 1.01106 1.21775 0.93285 0.95284 0.92429 0.89058 1.22370 0.97698 1.01748 1.01702 1.62457 1.59177 1.02078 1.02314 1.22095 0.93984 0.99512 0.88810 1.19009 0.91670 0.84100 0.93099 1.00879 1.21467 1.30598 0.95706 1.08467 0.92775 1.25611 0.95358 0.98302 0.98848 1.70018 1.37277 1.11024 1.36489 0.85599 0.78110 0.78515 0.79941 1.19535 1.20737 1.20782 1.62410 1.59331 1.03096 1.01750 1.22228 0.97150 0.98732 0.92910 1.21249 0.92823 0.94355 0.90905 1.21794 1.01094 0.93236 1.02464 1.22187 0.97159 1.01206 1.00968 1.22130 0.97101 0.89458 0.96907 0.91784 0.94526 0.93663 0.94282 0.90381 0.94928 0.92326 0.90568 0.99132 0.89125 0.93065 0.90572 0.92944 0.97253 0.92140 0.90465 0.92556 0.94224 0.91235 0.93810 0.95418 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.80 71.98 0.71 -3.56 16 2 C -0.11 -3.84 5.10 30.60 0.16 -3.68 16 3 C 0.08 2.62 2.43 44.91 0.11 2.73 16 4 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 5 C -0.18 -5.37 8.50 71.98 0.61 -4.76 16 6 N -0.54 -20.92 3.51 -870.48 -3.05 -23.97 16 7 C 0.08 4.06 3.88 86.31 0.33 4.40 16 8 C 0.23 11.73 1.56 44.17 0.07 11.80 16 9 H -0.03 -1.53 6.35 -2.39 -0.02 -1.55 16 10 C -0.52 -29.16 7.88 25.60 0.20 -28.96 16 11 H 0.05 3.04 6.46 -2.91 -0.02 3.02 16 12 C 0.02 1.01 5.30 84.65 0.45 1.46 16 13 N -0.91 -51.84 11.35 21.45 0.24 -51.60 16 14 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 N -0.54 -23.49 4.54 -851.38 -3.87 -27.36 16 19 C 0.04 1.52 8.54 127.69 1.09 2.61 16 20 C 0.10 3.42 0.68 3.54 0.00 3.43 16 21 C -0.13 -3.51 8.14 71.98 0.59 -2.93 16 22 C -0.16 -5.54 7.65 71.98 0.55 -4.99 16 23 C 0.07 2.49 3.84 86.31 0.33 2.82 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.47 7.75 -2.39 -0.02 1.45 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.61 6.00 -2.39 -0.01 1.60 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.03 1.17 6.56 -2.39 -0.02 1.15 16 30 H 0.06 1.70 6.48 -2.39 -0.02 1.68 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H -0.01 -0.50 6.57 -2.38 -0.02 -0.51 16 33 H 0.09 4.86 3.94 -2.39 -0.01 4.85 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.08 2.52 6.25 -2.39 -0.01 2.51 16 36 H 0.05 2.28 6.16 -2.39 -0.01 2.27 16 37 H 0.01 0.37 6.39 -2.39 -0.02 0.35 16 38 H 0.06 1.59 6.36 -2.39 -0.02 1.57 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 1.69 5.94 -2.39 -0.01 1.68 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.04 1.51 6.48 -2.39 -0.02 1.50 16 44 H 0.03 0.99 6.48 -2.39 -0.02 0.98 16 45 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -60.33 319.30 1.50 -58.83 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.95 Total: 17.54 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.20 Total: -19.64 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -6.67 Total: -102.93 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.33 1.50 -58.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221767329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.224 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds