Wall clock time and date at job start Mon Mar 30 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 H 1.08997 * 109.47103 * 306.22008 * 3 2 1 5 5 C 1.53001 * 109.47138 * 186.22337 * 3 2 1 6 6 N 1.46894 * 109.47117 * 66.21926 * 3 2 1 7 7 C 1.46960 * 110.99825 * 99.68373 * 6 3 2 8 8 H 1.09000 * 109.49082 * 63.22164 * 7 6 3 9 9 C 1.50693 * 109.48704 * 303.15361 * 7 6 3 10 10 H 1.08004 * 120.00244 * 354.12001 * 9 7 6 11 11 C 1.37879 * 119.99741 * 174.12293 * 9 7 6 12 12 N 1.31511 * 120.00177 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 119.99926 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47477 * 89.99589 * 13 11 9 15 15 H 1.48502 * 109.46902 * 209.99967 * 13 11 9 16 16 H 1.48500 * 109.46859 * 329.99395 * 13 11 9 17 17 C 1.53053 * 109.36402 * 183.18656 * 7 6 3 18 18 N 1.46957 * 109.36702 * 301.60052 * 17 7 6 19 19 C 1.46895 * 111.00448 * 183.18930 * 18 17 7 20 20 C 1.46958 * 110.88392 * 59.31702 * 18 17 7 21 21 C 1.46963 * 111.00110 * 223.48074 * 6 3 2 22 22 C 1.52997 * 109.48806 * 296.78108 * 21 6 3 23 23 C 1.53000 * 109.48854 * 56.82216 * 21 6 3 24 24 H 1.09001 * 109.46570 * 60.00337 * 1 2 3 25 25 H 1.08994 * 109.47109 * 299.99939 * 1 2 3 26 26 H 1.09001 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46828 * 120.00089 * 2 1 3 28 28 H 1.09004 * 109.47105 * 240.00117 * 2 1 3 29 29 H 1.09003 * 109.46594 * 313.71960 * 5 3 2 30 30 H 1.08997 * 109.47202 * 73.72040 * 5 3 2 31 31 H 1.09003 * 109.47398 * 193.72523 * 5 3 2 32 32 H 0.96998 * 120.00202 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.48876 * 181.63083 * 17 7 6 34 34 H 1.09000 * 109.50555 * 61.57492 * 17 7 6 35 35 H 1.09001 * 109.46979 * 296.20182 * 19 18 17 36 36 H 1.08997 * 109.47212 * 56.19477 * 19 18 17 37 37 H 1.08997 * 109.47647 * 176.20059 * 19 18 17 38 38 H 1.08994 * 109.49135 * 180.71996 * 20 18 17 39 39 H 1.09000 * 109.48744 * 60.64762 * 20 18 17 40 40 H 1.09004 * 109.47540 * 55.70209 * 22 21 6 41 41 H 1.08997 * 109.47356 * 175.70607 * 22 21 6 42 42 H 1.09005 * 109.47469 * 295.70728 * 22 21 6 43 43 H 1.09000 * 109.46606 * 62.47656 * 23 21 6 44 44 H 1.08990 * 109.47135 * 182.47504 * 23 21 6 45 45 H 1.08997 * 109.47004 * 302.47932 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5887 1.9874 -0.8290 5 6 3.5620 1.4453 -0.1564 6 7 1.6767 2.0903 1.2673 7 6 2.8151 2.1048 2.1966 8 1 3.6228 2.7018 1.7731 9 6 3.2969 0.6951 2.4234 10 1 2.7501 -0.1366 2.0041 11 6 4.4359 0.4670 3.1663 12 7 5.1020 1.4796 3.6765 13 14 5.0336 -1.2805 3.4468 14 1 5.9665 -1.6655 2.3576 15 1 5.7372 -1.3594 4.7522 16 1 3.8721 -2.2058 3.4540 17 6 2.3744 2.7144 3.5295 18 7 1.8686 4.0749 3.2996 19 6 1.5053 4.7228 4.5669 20 6 0.7302 4.0605 2.3703 21 6 1.1710 3.4508 1.0374 22 6 2.2784 4.3102 0.4244 23 6 -0.0219 3.3971 0.0808 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.9980 0.7093 0.5192 30 1 3.8221 1.1938 -1.1845 31 1 3.9503 2.4349 0.0850 32 1 5.9030 1.3191 4.1994 33 1 3.2245 2.7528 4.2106 34 1 1.5855 2.1023 3.9666 35 1 0.6826 4.1784 5.0305 36 1 2.3656 4.7199 5.2362 37 1 1.1980 5.7507 4.3746 38 1 0.3818 5.0801 2.2062 39 1 -0.0774 3.4635 2.7938 40 1 2.6463 3.8346 -0.4848 41 1 1.8817 5.2965 0.1835 42 1 3.0964 4.4119 1.1377 43 1 -0.8277 2.8219 0.5370 44 1 -0.3692 4.4096 -0.1241 45 1 0.2813 2.9212 -0.8517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221768360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:06 Heat of formation + Delta-G solvation = 7.937114 kcal Electronic energy + Delta-G solvation = -21833.571752 eV Core-core repulsion = 19078.990149 eV Total energy + Delta-G solvation = -2754.581603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23683 -37.48224 -35.61802 -34.32803 -32.60965 -30.33593 -28.67139 -27.95463 -27.72884 -27.04281 -24.51710 -23.38143 -22.13366 -21.04872 -18.86816 -18.43199 -16.89181 -16.70004 -15.97023 -15.84884 -15.42250 -15.36420 -15.00980 -14.33517 -14.18305 -14.05467 -13.72834 -13.67533 -13.46310 -13.05998 -12.93427 -12.74887 -12.63806 -12.56520 -12.35320 -12.20492 -12.14697 -12.04107 -11.89983 -11.69879 -11.47926 -11.46692 -11.12085 -10.82024 -10.42739 -10.24933 -9.07495 -8.60036 -8.02283 -6.03602 1.41670 1.44760 1.52485 2.46464 3.17976 3.37315 3.41738 4.01180 4.18668 4.30300 4.32625 4.50090 4.53329 4.59683 4.63182 4.70052 4.75669 4.78458 4.83536 4.89627 4.93845 4.98289 4.99748 5.03459 5.05036 5.13846 5.18778 5.23949 5.32641 5.38979 5.45344 5.49271 5.57156 5.61531 5.69498 5.86934 5.98382 6.03193 6.22374 6.35854 6.47512 6.67223 7.01148 7.12309 7.58000 9.04683 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.011106 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.489555 B = 2520.459797 C = 3469.887877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.098 3.902 4 H 0.073 0.927 5 C -0.176 4.176 6 N -0.523 5.523 7 C 0.229 3.771 8 H -0.004 1.004 9 C -0.498 4.498 10 H 0.077 0.923 11 C 0.014 3.986 12 N -0.919 5.919 13 Si 0.939 3.061 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.269 1.269 17 C 0.085 3.915 18 N -0.558 5.558 19 C 0.031 3.969 20 C 0.075 3.925 21 C 0.099 3.901 22 C -0.159 4.159 23 C -0.130 4.130 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.060 0.940 34 H -0.007 1.007 35 H 0.018 0.982 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 3.562 -6.286 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C -0.010 4.010 4 H 0.091 0.909 5 C -0.234 4.234 6 N -0.247 5.247 7 C 0.122 3.878 8 H 0.014 0.986 9 C -0.537 4.537 10 H 0.094 0.906 11 C -0.185 4.185 12 N -0.560 5.560 13 Si 0.767 3.233 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.194 1.194 17 C -0.044 4.044 18 N -0.282 5.282 19 C -0.117 4.117 20 C -0.053 4.053 21 C 0.008 3.992 22 C -0.217 4.217 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.011 0.989 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.125 3.599 -6.160 11.583 hybrid contribution 1.019 -0.878 0.779 1.554 sum -8.106 2.721 -5.381 10.103 Atomic orbital electron populations 1.21567 0.95086 1.00542 1.01426 1.21756 0.96650 0.96064 1.00981 1.21495 0.93096 0.95289 0.91113 0.90901 1.22603 0.98348 1.02225 1.00178 1.62494 1.34839 1.15923 1.11489 1.19061 0.86960 0.94232 0.87548 0.98648 1.21662 1.08178 0.93423 1.30409 0.90567 1.25552 0.97249 0.99366 0.96303 1.70063 1.18285 1.31328 1.36316 0.85833 0.78454 0.81975 0.77074 1.20504 1.21778 1.19387 1.22065 0.96402 0.85483 1.00417 1.62232 1.33028 1.20133 1.12805 1.22292 0.99113 0.99351 0.90927 1.22127 0.90953 0.99897 0.92332 1.21229 0.95065 0.88565 0.94310 1.22303 0.99647 1.00074 0.99705 1.21887 0.96309 1.02279 0.98239 0.92477 0.93331 0.93365 0.92563 0.92353 0.90801 0.93767 0.94849 0.93491 0.92165 0.98851 0.96321 0.92776 0.89883 0.89525 0.95816 0.93425 0.91699 0.94251 0.92249 0.90827 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.80 71.98 0.71 -3.06 16 2 C -0.12 -4.03 5.39 30.60 0.16 -3.86 16 3 C 0.10 3.58 1.32 44.92 0.06 3.64 16 4 H 0.07 2.37 4.88 -2.39 -0.01 2.36 16 5 C -0.18 -7.17 7.52 71.98 0.54 -6.63 16 6 N -0.52 -20.84 3.66 -800.88 -2.94 -23.77 16 7 C 0.23 11.09 0.91 44.17 0.04 11.13 16 8 H 0.00 -0.22 4.59 -2.39 -0.01 -0.23 16 9 C -0.50 -25.84 5.21 25.60 0.13 -25.70 16 10 H 0.08 3.92 4.33 -2.91 -0.01 3.91 16 11 C 0.01 0.73 5.33 84.66 0.45 1.18 16 12 N -0.92 -52.50 11.79 21.45 0.25 -52.25 16 13 Si 0.94 43.31 29.54 68.60 2.03 45.34 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.08 4.11 4.72 86.31 0.41 4.52 16 18 N -0.56 -22.43 4.21 -921.96 -3.88 -26.32 16 19 C 0.03 1.06 9.60 127.69 1.23 2.28 16 20 C 0.08 2.58 4.33 86.31 0.37 2.95 16 21 C 0.10 3.34 0.66 3.53 0.00 3.35 16 22 C -0.16 -5.48 6.98 71.98 0.50 -4.97 16 23 C -0.13 -3.40 8.34 71.98 0.60 -2.80 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.57 7.72 -2.39 -0.02 1.55 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 2.30 4.92 -2.39 -0.01 2.29 16 28 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 3.49 5.19 -2.39 -0.01 3.48 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.46 4.89 -2.39 -0.01 1.45 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.06 3.32 6.59 -2.39 -0.02 3.31 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 1.62 5.84 -2.39 -0.01 1.60 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.64 6.06 -2.38 -0.01 1.63 16 43 H 0.06 1.56 8.07 -2.39 -0.02 1.54 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 1.61 5.85 -2.39 -0.01 1.60 16 Total: -1.00 -57.76 315.56 1.62 -56.14 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.95 Total: 18.84 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 5.21 Total: -17.97 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -6.56 Total: -102.34 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -57.76 1.62 -56.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221768360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.078 kcal (2) G-P(sol) polarization free energy of solvation -57.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds