Wall clock time and date at job start Mon Mar 30 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 C 1.52995 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47021 * 185.44625 * 4 3 2 6 6 C 1.48068 * 111.00424 * 67.11922 * 5 4 3 7 7 H 1.08995 * 108.78642 * 312.99619 * 6 5 4 8 8 C 1.53001 * 108.78866 * 71.32544 * 6 5 4 9 9 C 1.50748 * 112.84676 * 192.16076 * 6 5 4 10 10 C 1.54649 * 108.86647 * 92.78970 * 9 6 5 11 11 N 1.40084 * 111.43595 * 283.85153 * 10 9 6 12 12 C 1.46903 * 111.00250 * 188.19033 * 11 10 9 13 13 C 1.47690 * 114.56760 * 61.49411 * 11 10 9 14 14 C 1.47746 * 110.99841 * 299.51462 * 5 4 3 15 15 H 1.09006 * 108.99573 * 205.57099 * 14 5 4 16 16 C 1.50702 * 108.99418 * 324.31637 * 14 5 4 17 17 H 1.08001 * 119.99770 * 0.73620 * 16 14 5 18 18 C 1.37879 * 119.99982 * 180.72866 * 16 14 5 19 19 N 1.31512 * 119.99869 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99692 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47145 * 60.00328 * 20 18 16 22 22 H 1.48503 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47262 * 300.00216 * 20 18 16 24 24 H 1.09004 * 109.47222 * 59.99898 * 1 2 3 25 25 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.47152 * 240.00120 * 2 1 3 28 28 H 1.08999 * 109.47221 * 119.99617 * 2 1 3 29 29 H 1.09001 * 109.46615 * 59.99619 * 3 2 1 30 30 H 1.08999 * 109.46702 * 299.99935 * 3 2 1 31 31 H 1.09001 * 109.47304 * 65.44365 * 4 3 2 32 32 H 1.09004 * 109.46843 * 305.44054 * 4 3 2 33 33 H 1.09005 * 109.46987 * 61.65297 * 8 6 5 34 34 H 1.08999 * 109.47068 * 301.64976 * 8 6 5 35 35 H 1.08994 * 109.46735 * 181.64883 * 8 6 5 36 36 H 1.09000 * 109.55307 * 212.54607 * 9 6 5 37 37 H 1.08999 * 109.56010 * 332.86807 * 9 6 5 38 38 H 1.09000 * 109.07929 * 163.37149 * 10 9 6 39 39 H 1.09000 * 109.09243 * 44.33859 * 10 9 6 40 40 H 1.08995 * 109.47206 * 291.36139 * 12 11 10 41 41 H 1.08997 * 109.46882 * 51.35811 * 12 11 10 42 42 H 1.08999 * 109.46888 * 171.35975 * 12 11 10 43 43 H 1.08999 * 109.73664 * 159.03830 * 13 11 10 44 44 H 1.09001 * 109.74044 * 38.34221 * 13 11 10 45 45 H 0.96999 * 119.99614 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8212 0.1308 6 6 3.7304 3.3766 1.4633 7 1 2.6853 3.1608 1.6851 8 6 4.6078 2.6918 2.5131 9 6 3.9469 4.8662 1.5463 10 6 2.6196 5.5840 1.2079 11 7 2.3648 5.5664 -0.1695 12 6 1.2107 6.4122 -0.5023 13 6 2.2162 4.2163 -0.7493 14 6 3.5950 3.6577 -0.9949 15 1 4.2925 4.4836 -1.1348 16 6 3.5695 2.8223 -2.2489 17 1 3.8546 1.7813 -2.2101 18 6 3.1820 3.3868 -3.4457 19 7 2.8351 4.6545 -3.4929 20 14 3.1498 2.3510 -4.9998 21 1 2.2106 1.2152 -4.8183 22 1 2.7014 3.1869 -6.1425 23 1 4.5122 1.8278 -5.2744 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 1.0156 -0.9356 32 1 3.9336 0.8465 0.8364 33 1 5.6567 2.9003 2.3021 34 1 4.4379 1.6155 2.4825 35 1 4.3538 3.0717 3.5026 36 1 4.2587 5.1337 2.5559 37 1 4.7166 5.1633 0.8341 38 1 2.6777 6.6186 1.5461 39 1 1.8017 5.0851 1.7277 40 1 0.3021 5.9596 -0.1055 41 1 1.3460 7.4006 -0.0631 42 1 1.1279 6.5041 -1.5853 43 1 1.6709 4.2780 -1.6910 44 1 1.6774 3.5738 -0.0528 45 1 2.5629 5.0517 -4.3349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221770211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:52 Heat of formation + Delta-G solvation = 20.628694 kcal Electronic energy + Delta-G solvation = -21420.160433 eV Core-core repulsion = 18666.129178 eV Total energy + Delta-G solvation = -2754.031255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38855 -36.06070 -34.11626 -33.49467 -31.40871 -28.90880 -28.21645 -26.60821 -25.44900 -24.33165 -22.12959 -21.73182 -20.89315 -19.51106 -18.13231 -16.55382 -15.49148 -14.95584 -14.72941 -14.46251 -14.24774 -14.09161 -13.46686 -13.12255 -12.76772 -12.39190 -12.25444 -12.17597 -11.78799 -11.62449 -11.50074 -11.21799 -11.08670 -10.99500 -10.89852 -10.75713 -10.65143 -10.39440 -10.28222 -10.11145 -9.96665 -9.90559 -9.57484 -9.30487 -8.65592 -8.28115 -7.28469 -6.83607 -5.93639 -4.00580 3.33084 3.38198 3.40959 4.43516 4.86889 5.04727 5.35957 5.39558 5.42227 5.48578 5.50326 5.62789 5.73795 5.92359 5.98619 6.06488 6.08804 6.13645 6.18058 6.22619 6.23644 6.26651 6.34832 6.38230 6.48457 6.51224 6.60258 6.62805 6.65268 6.68872 6.76515 6.91313 7.04093 7.11252 7.24753 7.43406 7.72641 7.88676 8.09846 8.21031 8.42840 8.54091 8.78293 9.09019 9.63009 11.09243 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.010671 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.323654 B = 2623.385095 C = 3467.426996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.155 4.155 4 C 0.066 3.934 5 N -0.539 5.539 6 C 0.081 3.919 7 H 0.029 0.971 8 C -0.140 4.140 9 C -0.113 4.113 10 C 0.080 3.920 11 N -0.550 5.550 12 C 0.043 3.957 13 C 0.051 3.949 14 C 0.222 3.778 15 H 0.053 0.947 16 C -0.516 4.516 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.876 5.876 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.054 0.946 39 H -0.001 1.001 40 H 0.004 0.996 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.015 0.985 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -2.604 8.602 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.194 4.194 4 C -0.062 4.062 5 N -0.263 5.263 6 C -0.027 4.027 7 H 0.047 0.953 8 C -0.197 4.197 9 C -0.152 4.152 10 C -0.051 4.051 11 N -0.274 5.274 12 C -0.105 4.105 13 C -0.076 4.076 14 C 0.116 3.884 15 H 0.071 0.929 16 C -0.555 4.555 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.514 5.514 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.017 0.983 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.774 -2.255 8.250 8.735 hybrid contribution -1.745 -0.737 -0.443 1.945 sum -3.519 -2.992 7.807 9.071 Atomic orbital electron populations 1.21758 0.96847 1.00529 1.01523 1.21475 0.95053 0.98225 1.01015 1.22505 0.98993 0.95470 1.02383 1.22120 0.91734 0.91191 1.01164 1.62341 1.60589 1.02346 1.01051 1.21288 0.96571 0.93987 0.90863 0.95275 1.21903 1.00749 1.00113 0.96967 1.21606 0.98279 0.94444 1.00828 1.21005 0.95757 0.98805 0.89496 1.58944 1.39814 1.15969 1.12654 1.22183 0.90520 0.95740 1.02095 1.22951 1.01730 0.84214 0.98658 1.19073 0.90988 0.92351 0.86034 0.92932 1.21463 1.44874 0.97179 0.92011 0.91380 1.24940 0.95702 0.94873 0.98544 1.70017 1.44660 1.10946 1.25815 0.86757 0.78425 0.80229 0.83162 1.20476 1.21513 1.20312 0.92725 0.93593 0.93473 0.92195 0.93221 0.93695 0.89206 0.89470 0.93814 0.92347 0.93270 0.93695 0.92079 0.89843 0.92720 0.98271 0.97729 0.93436 0.90890 0.88046 0.96731 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.03 16 3 C -0.15 -2.87 3.43 -26.73 -0.09 -2.96 16 4 C 0.07 1.29 4.70 -3.83 -0.02 1.27 16 5 N -0.54 -11.36 4.61 -221.16 -1.02 -12.38 16 6 C 0.08 1.49 1.77 -68.20 -0.12 1.37 16 7 H 0.03 0.57 4.56 -51.93 -0.24 0.33 16 8 C -0.14 -2.16 8.99 37.16 0.33 -1.83 16 9 C -0.11 -2.02 5.19 -26.99 -0.14 -2.16 16 10 C 0.08 1.46 4.96 -6.48 -0.03 1.43 16 11 N -0.55 -11.65 4.23 -247.92 -1.05 -12.70 16 12 C 0.04 0.81 9.45 60.07 0.57 1.38 16 13 C 0.05 1.18 3.30 -4.50 -0.01 1.17 16 14 C 0.22 5.35 1.76 -69.51 -0.12 5.23 16 15 H 0.05 1.48 7.19 -51.93 -0.37 1.11 16 16 C -0.52 -13.32 6.83 -34.44 -0.24 -13.55 16 17 H 0.07 1.74 5.10 -52.49 -0.27 1.47 16 18 C 0.06 1.63 5.02 -17.82 -0.09 1.54 16 19 N -0.88 -23.90 11.47 55.43 0.64 -23.26 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.84 5.51 -51.93 -0.29 0.56 16 30 H 0.09 1.94 5.19 -51.93 -0.27 1.67 16 31 H 0.09 1.84 5.47 -51.93 -0.28 1.55 16 32 H 0.04 0.77 6.38 -51.93 -0.33 0.44 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.74 6.52 -51.93 -0.34 0.41 16 35 H 0.04 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 37 H 0.08 1.69 7.18 -51.93 -0.37 1.32 16 38 H 0.05 0.91 7.85 -51.93 -0.41 0.51 16 39 H 0.00 -0.01 7.59 -51.93 -0.39 -0.40 16 40 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 41 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 42 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 43 H 0.10 2.64 5.44 -51.93 -0.28 2.36 16 44 H 0.01 0.33 3.87 -51.93 -0.20 0.13 16 45 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -26.31 317.23 -9.21 -35.52 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.78 Total: 3.28 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 0.25 Total: -10.92 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -1.43 Total: -48.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.31 -9.21 -35.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221770211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.149 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds