Wall clock time and date at job start Mon Mar 30 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 C 1.52995 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47021 * 185.44625 * 4 3 2 6 6 C 1.48068 * 111.00424 * 67.11922 * 5 4 3 7 7 H 1.08995 * 108.78642 * 312.99619 * 6 5 4 8 8 C 1.53001 * 108.78866 * 71.32544 * 6 5 4 9 9 C 1.50748 * 112.84676 * 192.16076 * 6 5 4 10 10 C 1.54649 * 108.86647 * 92.78970 * 9 6 5 11 11 N 1.40084 * 111.43595 * 283.85153 * 10 9 6 12 12 C 1.46903 * 111.00250 * 188.19033 * 11 10 9 13 13 C 1.47690 * 114.56760 * 61.49411 * 11 10 9 14 14 C 1.47746 * 110.99841 * 299.51462 * 5 4 3 15 15 H 1.09006 * 108.99573 * 205.57099 * 14 5 4 16 16 C 1.50702 * 108.99418 * 324.31637 * 14 5 4 17 17 H 1.08001 * 119.99770 * 0.73620 * 16 14 5 18 18 C 1.37879 * 119.99982 * 180.72866 * 16 14 5 19 19 N 1.31512 * 119.99869 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99692 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47145 * 60.00328 * 20 18 16 22 22 H 1.48503 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47262 * 300.00216 * 20 18 16 24 24 H 1.09004 * 109.47222 * 59.99898 * 1 2 3 25 25 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.47152 * 240.00120 * 2 1 3 28 28 H 1.08999 * 109.47221 * 119.99617 * 2 1 3 29 29 H 1.09001 * 109.46615 * 59.99619 * 3 2 1 30 30 H 1.08999 * 109.46702 * 299.99935 * 3 2 1 31 31 H 1.09001 * 109.47304 * 65.44365 * 4 3 2 32 32 H 1.09004 * 109.46843 * 305.44054 * 4 3 2 33 33 H 1.09005 * 109.46987 * 61.65297 * 8 6 5 34 34 H 1.08999 * 109.47068 * 301.64976 * 8 6 5 35 35 H 1.08994 * 109.46735 * 181.64883 * 8 6 5 36 36 H 1.09000 * 109.55307 * 212.54607 * 9 6 5 37 37 H 1.08999 * 109.56010 * 332.86807 * 9 6 5 38 38 H 1.09000 * 109.07929 * 163.37149 * 10 9 6 39 39 H 1.09000 * 109.09243 * 44.33859 * 10 9 6 40 40 H 1.08995 * 109.47206 * 291.36139 * 12 11 10 41 41 H 1.08997 * 109.46882 * 51.35811 * 12 11 10 42 42 H 1.08999 * 109.46888 * 171.35975 * 12 11 10 43 43 H 1.08999 * 109.73664 * 159.03830 * 13 11 10 44 44 H 1.09001 * 109.74044 * 38.34221 * 13 11 10 45 45 H 0.96999 * 119.99614 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8212 0.1308 6 6 3.7304 3.3766 1.4633 7 1 2.6853 3.1608 1.6851 8 6 4.6078 2.6918 2.5131 9 6 3.9469 4.8662 1.5463 10 6 2.6196 5.5840 1.2079 11 7 2.3648 5.5664 -0.1695 12 6 1.2107 6.4122 -0.5023 13 6 2.2162 4.2163 -0.7493 14 6 3.5950 3.6577 -0.9949 15 1 4.2925 4.4836 -1.1348 16 6 3.5695 2.8223 -2.2489 17 1 3.8546 1.7813 -2.2101 18 6 3.1820 3.3868 -3.4457 19 7 2.8351 4.6545 -3.4929 20 14 3.1498 2.3510 -4.9998 21 1 2.2106 1.2152 -4.8183 22 1 2.7014 3.1869 -6.1425 23 1 4.5122 1.8278 -5.2744 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 1.0156 -0.9356 32 1 3.9336 0.8465 0.8364 33 1 5.6567 2.9003 2.3021 34 1 4.4379 1.6155 2.4825 35 1 4.3538 3.0717 3.5026 36 1 4.2587 5.1337 2.5559 37 1 4.7166 5.1633 0.8341 38 1 2.6777 6.6186 1.5461 39 1 1.8017 5.0851 1.7277 40 1 0.3021 5.9596 -0.1055 41 1 1.3460 7.4006 -0.0631 42 1 1.1279 6.5041 -1.5853 43 1 1.6709 4.2780 -1.6910 44 1 1.6774 3.5738 -0.0528 45 1 2.5629 5.0517 -4.3349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221770211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:51 Heat of formation + Delta-G solvation = 4.185952 kcal Electronic energy + Delta-G solvation = -21420.873444 eV Core-core repulsion = 18666.129178 eV Total energy + Delta-G solvation = -2754.744266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01805 -37.62784 -35.62097 -35.19050 -33.11854 -30.52538 -29.66527 -28.14669 -27.35701 -25.81901 -23.57913 -23.42240 -22.36819 -21.08884 -19.78292 -18.42019 -17.22401 -16.54467 -16.31605 -16.09496 -15.97401 -15.55755 -14.93640 -14.61830 -14.26574 -14.04289 -13.74848 -13.60200 -13.26407 -13.08487 -12.97555 -12.87919 -12.77571 -12.58525 -12.46274 -12.41689 -12.25822 -11.94554 -11.70301 -11.64226 -11.61013 -11.51686 -11.15563 -10.94696 -10.55648 -10.28615 -8.92192 -8.50246 -7.97111 -6.09015 1.43984 1.45417 1.51251 2.47423 3.22143 3.37044 3.47315 4.00851 4.04820 4.11323 4.16446 4.29202 4.39943 4.51795 4.53649 4.60217 4.62968 4.64884 4.82485 4.84599 4.88630 4.94196 4.95572 4.98639 5.03157 5.08635 5.11481 5.17972 5.23497 5.30599 5.33342 5.40016 5.43820 5.54883 5.60559 5.67926 5.84256 5.91969 6.27774 6.45722 6.65351 6.80872 7.04056 7.11556 7.58088 9.04555 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.010671 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.323654 B = 2623.385095 C = 3467.426996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.069 3.931 5 N -0.553 5.553 6 C 0.078 3.922 7 H 0.024 0.976 8 C -0.131 4.131 9 C -0.110 4.110 10 C 0.077 3.923 11 N -0.571 5.571 12 C 0.048 3.952 13 C 0.073 3.927 14 C 0.237 3.763 15 H 0.004 0.996 16 C -0.525 4.525 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.900 5.900 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.277 1.277 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.004 0.996 40 H 0.013 0.987 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.018 0.982 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -3.622 10.600 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.182 4.182 4 C -0.058 4.058 5 N -0.277 5.277 6 C -0.029 4.029 7 H 0.041 0.959 8 C -0.189 4.189 9 C -0.148 4.148 10 C -0.053 4.053 11 N -0.295 5.295 12 C -0.100 4.100 13 C -0.055 4.055 14 C 0.130 3.870 15 H 0.022 0.978 16 C -0.563 4.563 17 H 0.085 0.915 18 C -0.182 4.182 19 N -0.539 5.539 20 Si 0.769 3.231 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.202 1.202 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.022 0.978 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.078 -3.284 10.263 10.974 hybrid contribution -1.618 -0.399 -1.016 1.952 sum -3.696 -3.682 9.247 10.618 Atomic orbital electron populations 1.21732 0.95698 1.01905 1.01072 1.21448 0.96081 0.96088 1.01802 1.22298 0.98205 0.97186 1.00476 1.22077 0.92364 0.90383 1.01019 1.62235 1.61025 1.02784 1.01623 1.21424 0.96944 0.94652 0.89921 0.95859 1.21839 0.99775 1.00142 0.97135 1.21630 0.97112 0.94111 1.01952 1.21107 0.96068 1.00332 0.87752 1.58891 1.40994 1.15066 1.14590 1.22133 0.90268 0.96818 1.00800 1.22520 1.00370 0.85456 0.97182 1.18675 0.90288 0.91081 0.87002 0.97787 1.21759 1.44185 0.97343 0.93042 0.91479 1.25576 0.95697 0.95782 1.01115 1.70158 1.45524 1.12199 1.26021 0.85870 0.78308 0.78952 0.79992 1.19789 1.21619 1.20234 0.94262 0.91301 0.92882 0.92684 0.91085 0.93753 0.92814 0.91607 0.91351 0.92660 0.92839 0.90878 0.88531 0.92804 0.90524 0.97771 0.96828 0.90734 0.93345 0.91519 0.96415 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.12 -3.44 5.93 30.59 0.18 -3.26 16 3 C -0.14 -5.22 3.43 30.59 0.11 -5.12 16 4 C 0.07 2.66 4.70 86.30 0.41 3.06 16 5 N -0.55 -23.33 4.61 -853.63 -3.94 -27.27 16 6 C 0.08 2.75 1.77 43.96 0.08 2.83 16 7 H 0.02 0.86 4.56 -2.39 -0.01 0.85 16 8 C -0.13 -3.66 8.99 71.98 0.65 -3.01 16 9 C -0.11 -3.76 5.19 30.43 0.16 -3.60 16 10 C 0.08 2.72 4.96 88.10 0.44 3.15 16 11 N -0.57 -24.39 4.23 -938.29 -3.97 -28.36 16 12 C 0.05 1.81 9.45 127.69 1.21 3.01 16 13 C 0.07 3.43 3.30 85.43 0.28 3.71 16 14 C 0.24 11.82 1.76 43.29 0.08 11.89 16 15 H 0.00 0.26 7.19 -2.38 -0.02 0.24 16 16 C -0.52 -27.96 6.83 25.60 0.17 -27.78 16 17 H 0.07 3.53 5.10 -2.91 -0.01 3.51 16 18 C 0.02 0.98 5.02 84.66 0.43 1.41 16 19 N -0.90 -51.05 11.47 21.45 0.25 -50.80 16 20 Si 0.94 43.48 29.54 68.60 2.03 45.50 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.61 5.51 -2.39 -0.01 1.60 16 30 H 0.05 2.37 5.19 -2.39 -0.01 2.36 16 31 H 0.07 2.79 5.47 -2.39 -0.01 2.78 16 32 H 0.07 2.28 6.38 -2.38 -0.02 2.26 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.05 1.44 6.52 -2.39 -0.02 1.42 16 35 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 36 H 0.10 2.59 7.66 -2.39 -0.02 2.57 16 37 H 0.05 2.18 7.18 -2.39 -0.02 2.16 16 38 H 0.08 2.37 7.85 -2.39 -0.02 2.35 16 39 H 0.00 0.15 7.59 -2.39 -0.02 0.14 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 2.38 7.88 -2.39 -0.02 2.36 16 42 H 0.05 2.04 8.07 -2.39 -0.02 2.02 16 43 H 0.07 3.63 5.44 -2.39 -0.01 3.62 16 44 H 0.02 0.82 3.87 -2.39 -0.01 0.81 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -58.77 317.23 0.21 -58.56 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.95 Total: 19.25 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.89 Total: -16.89 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -7.66 Total: -106.42 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -58.77 0.21 -58.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221770211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.743 kcal (2) G-P(sol) polarization free energy of solvation -58.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds