Wall clock time and date at job start Mon Mar 30 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 N 1.46899 * 109.47412 * 120.00005 * 2 1 3 5 5 C 1.47748 * 110.99712 * 301.57225 * 4 2 1 6 6 C 1.50776 * 111.90982 * 192.80932 * 5 4 2 7 7 H 1.09003 * 109.77928 * 334.95389 * 6 5 4 8 8 C 1.50689 * 109.74288 * 214.27176 * 6 5 4 9 9 H 1.08000 * 120.00426 * 305.82492 * 8 6 5 10 10 C 1.37879 * 120.00417 * 125.82047 * 8 6 5 11 11 N 1.31521 * 119.99827 * 5.24237 * 10 8 6 12 12 Si 1.86795 * 120.00541 * 185.23669 * 10 8 6 13 13 H 1.48503 * 109.47077 * 60.00420 * 12 10 8 14 14 H 1.48495 * 109.47491 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47331 * 300.00512 * 12 10 8 16 16 N 1.47692 * 108.09158 * 94.62042 * 6 5 4 17 17 C 1.46901 * 110.99822 * 151.97922 * 16 6 5 18 18 C 1.40082 * 114.57563 * 278.67847 * 16 6 5 19 19 C 1.54510 * 111.44934 * 61.47994 * 18 16 6 20 20 C 1.48066 * 111.00210 * 173.98069 * 4 2 1 21 21 C 1.52992 * 108.79041 * 205.23994 * 20 4 2 22 22 C 1.53003 * 108.78653 * 323.56860 * 20 4 2 23 23 H 1.09000 * 109.46868 * 299.99891 * 1 2 3 24 24 H 1.08992 * 109.47241 * 60.00058 * 1 2 3 25 25 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 240.00376 * 2 1 3 27 27 H 1.09005 * 109.47224 * 186.35624 * 3 2 1 28 28 H 1.09000 * 109.47431 * 306.35326 * 3 2 1 29 29 H 1.08995 * 109.47137 * 66.35496 * 3 2 1 30 30 H 1.09000 * 108.99066 * 72.19200 * 5 4 2 31 31 H 1.09000 * 108.93347 * 313.39807 * 5 4 2 32 32 H 0.96996 * 120.00156 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47185 * 183.49906 * 17 16 6 34 34 H 1.09005 * 109.46981 * 303.49102 * 17 16 6 35 35 H 1.08992 * 109.47566 * 63.49213 * 17 16 6 36 36 H 1.09000 * 109.07026 * 181.97063 * 18 16 6 37 37 H 1.09000 * 109.07158 * 300.99132 * 18 16 6 38 38 H 1.09003 * 109.56101 * 43.80445 * 19 18 16 39 39 H 1.09004 * 109.56095 * 164.12562 * 19 18 16 40 40 H 1.09001 * 109.47133 * 38.73861 * 21 20 4 41 41 H 1.09003 * 109.47275 * 158.73641 * 21 20 4 42 42 H 1.08997 * 109.47674 * 278.73949 * 21 20 4 43 43 H 1.09003 * 109.46970 * 67.25210 * 22 20 4 44 44 H 1.08997 * 109.47248 * 187.24771 * 22 20 4 45 45 H 1.08994 * 109.47271 * 307.25060 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.5154 -0.0447 2.4278 6 6 2.2382 -0.5316 3.6581 7 1 2.6431 -1.5275 3.4781 8 6 1.2859 -0.5728 4.8252 9 1 0.7251 0.3096 5.0960 10 6 1.1302 -1.7370 5.5473 11 7 1.8867 -2.7802 5.2841 12 14 -0.1549 -1.8327 6.8996 13 1 -1.5006 -1.5864 6.3219 14 1 -0.1214 -3.1815 7.5198 15 1 0.1358 -0.8060 7.9324 16 7 3.3393 0.4098 3.9458 17 6 3.6523 0.4309 5.3809 18 6 4.4959 0.2042 3.1827 19 6 4.2161 0.3818 1.6736 20 6 3.4927 -0.8390 1.1633 21 6 3.8894 -2.0422 2.0210 22 6 3.9267 -1.0995 -0.2805 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1240 1.4448 -0.1138 28 1 1.5867 1.9882 -0.8276 29 1 1.7724 1.9225 0.9413 30 1 0.4522 -0.2613 2.5321 31 1 1.6506 1.0334 2.3402 32 1 1.7770 -3.5993 5.7919 33 1 4.4233 1.1769 5.5737 34 1 2.7542 0.6826 5.9450 35 1 4.0116 -0.5509 5.6890 36 1 5.2576 0.9206 3.4905 37 1 4.8648 -0.8060 3.3602 38 1 3.5969 1.2654 1.5187 39 1 5.1588 0.4966 1.1386 40 1 3.1613 -2.8418 1.8841 41 1 4.8761 -2.3939 1.7194 42 1 3.9134 -1.7485 3.0703 43 1 3.7399 -0.2099 -0.8822 44 1 4.9904 -1.3365 -0.3031 45 1 3.3591 -1.9375 -0.6850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221771229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:10 Heat of formation + Delta-G solvation = 58.077211 kcal Electronic energy + Delta-G solvation = -21865.208123 eV Core-core repulsion = 19112.800757 eV Total energy + Delta-G solvation = -2752.407366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24151 -36.44569 -34.04982 -32.49236 -30.79154 -28.75682 -27.61365 -27.36478 -26.10188 -24.70817 -23.71642 -22.17837 -20.34283 -18.83216 -17.46401 -16.64659 -15.82705 -14.89863 -14.66168 -14.52446 -14.32327 -13.79526 -13.55941 -12.87934 -12.52385 -12.47791 -12.19826 -12.11033 -11.83565 -11.46469 -11.43369 -11.27711 -11.10424 -10.95124 -10.88074 -10.85068 -10.67071 -10.44153 -10.24317 -10.11153 -9.89481 -9.56751 -9.51770 -9.23226 -8.73732 -8.54795 -7.30922 -6.62936 -6.05162 -4.07440 3.30300 3.35718 3.38451 4.38065 4.57330 5.09381 5.31151 5.32240 5.44183 5.52260 5.56791 5.68706 5.77939 5.87078 5.95232 6.03462 6.11078 6.14537 6.15122 6.25208 6.29586 6.36134 6.45147 6.49986 6.50497 6.57111 6.62670 6.68685 6.77476 6.80233 6.85531 6.95820 7.00050 7.18355 7.28545 7.48945 7.76587 7.85426 7.98096 8.12062 8.20984 8.52869 8.99707 9.08995 9.55933 11.02074 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.008782 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.438852 B = 3187.639656 C = 3627.452600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.193 4.193 4 N -0.530 5.530 5 C 0.074 3.926 6 C 0.168 3.832 7 H 0.096 0.904 8 C -0.505 4.505 9 H 0.054 0.946 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 N -0.569 5.569 17 C 0.061 3.939 18 C 0.064 3.936 19 C -0.146 4.146 20 C 0.117 3.883 21 C -0.165 4.165 22 C -0.147 4.147 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 4.196 -8.655 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.251 4.251 4 N -0.255 5.255 5 C -0.053 4.053 6 C 0.065 3.935 7 H 0.113 0.887 8 C -0.544 4.544 9 H 0.072 0.928 10 C -0.133 4.133 11 N -0.525 5.525 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 N -0.295 5.295 17 C -0.086 4.086 18 C -0.066 4.066 19 C -0.185 4.185 20 C 0.028 3.972 21 C -0.222 4.222 22 C -0.204 4.204 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.647 3.950 -8.740 9.950 hybrid contribution -0.036 0.024 0.919 0.920 sum 2.610 3.974 -7.821 9.153 Atomic orbital electron populations 1.21839 0.95139 1.02049 1.01022 1.21711 0.95120 0.91951 0.94683 1.22767 1.01379 0.99053 1.01933 1.62532 1.08356 1.52307 1.02297 1.22239 0.99322 0.95536 0.88186 1.19886 0.88148 0.93660 0.91818 0.88655 1.20875 1.23303 0.96760 1.13488 0.92768 1.24957 0.95536 0.95874 0.96949 1.69881 1.38358 1.03186 1.41070 0.86673 0.82350 0.77031 0.82025 1.20156 1.21392 1.20280 1.59490 1.08547 1.56434 1.05045 1.21869 0.99695 0.97615 0.89470 1.21136 0.93564 0.98793 0.93141 1.22386 1.00015 0.99744 0.96366 1.20602 0.87217 0.95069 0.94318 1.22806 0.99026 0.97556 1.02789 1.22223 1.00350 1.01318 0.96514 0.92342 0.93406 0.92190 0.90534 0.92142 0.93483 0.91601 0.91365 0.95269 0.92764 0.95738 0.90569 0.96460 0.93985 0.95220 0.90236 0.92619 0.92047 0.94543 0.87720 0.92844 0.93012 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.92 37.16 0.33 -1.82 16 2 C 0.07 1.18 2.43 -67.71 -0.16 1.01 16 3 C -0.19 -2.84 7.26 37.16 0.27 -2.57 16 4 N -0.53 -10.09 4.38 -212.14 -0.93 -11.02 16 5 C 0.07 1.61 3.75 -4.47 -0.02 1.59 16 6 C 0.17 4.05 2.09 -69.55 -0.15 3.91 16 7 H 0.10 2.47 2.87 -51.93 -0.15 2.32 16 8 C -0.50 -13.30 5.67 -34.44 -0.20 -13.49 16 9 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 10 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 11 N -0.89 -24.62 12.64 55.43 0.70 -23.92 16 12 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 N -0.57 -12.65 4.19 -241.37 -1.01 -13.66 16 17 C 0.06 1.36 8.85 60.07 0.53 1.89 16 18 C 0.06 1.25 4.85 -6.56 -0.03 1.22 16 19 C -0.15 -2.55 4.12 -27.04 -0.11 -2.66 16 20 C 0.12 2.08 0.55 -132.07 -0.07 2.01 16 21 C -0.17 -3.28 6.52 37.15 0.24 -3.04 16 22 C -0.15 -2.16 6.72 37.16 0.25 -1.91 16 23 H 0.06 0.95 6.66 -51.93 -0.35 0.60 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.14 5.82 -51.93 -0.30 0.84 16 27 H 0.06 0.87 4.71 -51.93 -0.24 0.63 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.09 5.59 -51.93 -0.29 0.80 16 30 H 0.07 1.59 6.56 -51.93 -0.34 1.25 16 31 H 0.03 0.64 4.85 -51.93 -0.25 0.38 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.02 0.47 7.95 -51.93 -0.41 0.06 16 34 H 0.08 1.79 6.51 -51.93 -0.34 1.45 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.77 7.89 -51.93 -0.41 0.36 16 37 H 0.03 0.63 5.02 -51.93 -0.26 0.37 16 38 H 0.08 1.43 4.14 -51.93 -0.22 1.22 16 39 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 40 H 0.06 1.32 8.11 -51.93 -0.42 0.90 16 41 H 0.04 0.63 7.86 -51.93 -0.41 0.23 16 42 H 0.10 2.39 2.68 -51.93 -0.14 2.25 16 43 H 0.05 0.72 5.41 -51.93 -0.28 0.44 16 44 H 0.05 0.70 7.98 -51.93 -0.41 0.28 16 45 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -26.64 304.12 -8.16 -34.80 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.27 Total: 5.46 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 0.79 Total: -12.09 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -1.24 Total: -48.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.64 -8.16 -34.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221771229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.873 kcal (2) G-P(sol) polarization free energy of solvation -26.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds