Wall clock time and date at job start Mon Mar 30 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 N 1.46899 * 109.47412 * 120.00005 * 2 1 3 5 5 C 1.47748 * 110.99712 * 301.57225 * 4 2 1 6 6 C 1.50776 * 111.90982 * 192.80932 * 5 4 2 7 7 H 1.09003 * 109.77928 * 334.95389 * 6 5 4 8 8 C 1.50689 * 109.74288 * 214.27176 * 6 5 4 9 9 H 1.08000 * 120.00426 * 305.82492 * 8 6 5 10 10 C 1.37879 * 120.00417 * 125.82047 * 8 6 5 11 11 N 1.31521 * 119.99827 * 5.24237 * 10 8 6 12 12 Si 1.86795 * 120.00541 * 185.23669 * 10 8 6 13 13 H 1.48503 * 109.47077 * 60.00420 * 12 10 8 14 14 H 1.48495 * 109.47491 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47331 * 300.00512 * 12 10 8 16 16 N 1.47692 * 108.09158 * 94.62042 * 6 5 4 17 17 C 1.46901 * 110.99822 * 151.97922 * 16 6 5 18 18 C 1.40082 * 114.57563 * 278.67847 * 16 6 5 19 19 C 1.54510 * 111.44934 * 61.47994 * 18 16 6 20 20 C 1.48066 * 111.00210 * 173.98069 * 4 2 1 21 21 C 1.52992 * 108.79041 * 205.23994 * 20 4 2 22 22 C 1.53003 * 108.78653 * 323.56860 * 20 4 2 23 23 H 1.09000 * 109.46868 * 299.99891 * 1 2 3 24 24 H 1.08992 * 109.47241 * 60.00058 * 1 2 3 25 25 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 240.00376 * 2 1 3 27 27 H 1.09005 * 109.47224 * 186.35624 * 3 2 1 28 28 H 1.09000 * 109.47431 * 306.35326 * 3 2 1 29 29 H 1.08995 * 109.47137 * 66.35496 * 3 2 1 30 30 H 1.09000 * 108.99066 * 72.19200 * 5 4 2 31 31 H 1.09000 * 108.93347 * 313.39807 * 5 4 2 32 32 H 0.96996 * 120.00156 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47185 * 183.49906 * 17 16 6 34 34 H 1.09005 * 109.46981 * 303.49102 * 17 16 6 35 35 H 1.08992 * 109.47566 * 63.49213 * 17 16 6 36 36 H 1.09000 * 109.07026 * 181.97063 * 18 16 6 37 37 H 1.09000 * 109.07158 * 300.99132 * 18 16 6 38 38 H 1.09003 * 109.56101 * 43.80445 * 19 18 16 39 39 H 1.09004 * 109.56095 * 164.12562 * 19 18 16 40 40 H 1.09001 * 109.47133 * 38.73861 * 21 20 4 41 41 H 1.09003 * 109.47275 * 158.73641 * 21 20 4 42 42 H 1.08997 * 109.47674 * 278.73949 * 21 20 4 43 43 H 1.09003 * 109.46970 * 67.25210 * 22 20 4 44 44 H 1.08997 * 109.47248 * 187.24771 * 22 20 4 45 45 H 1.08994 * 109.47271 * 307.25060 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.5154 -0.0447 2.4278 6 6 2.2382 -0.5316 3.6581 7 1 2.6431 -1.5275 3.4781 8 6 1.2859 -0.5728 4.8252 9 1 0.7251 0.3096 5.0960 10 6 1.1302 -1.7370 5.5473 11 7 1.8867 -2.7802 5.2841 12 14 -0.1549 -1.8327 6.8996 13 1 -1.5006 -1.5864 6.3219 14 1 -0.1214 -3.1815 7.5198 15 1 0.1358 -0.8060 7.9324 16 7 3.3393 0.4098 3.9458 17 6 3.6523 0.4309 5.3809 18 6 4.4959 0.2042 3.1827 19 6 4.2161 0.3818 1.6736 20 6 3.4927 -0.8390 1.1633 21 6 3.8894 -2.0422 2.0210 22 6 3.9267 -1.0995 -0.2805 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1240 1.4448 -0.1138 28 1 1.5867 1.9882 -0.8276 29 1 1.7724 1.9225 0.9413 30 1 0.4522 -0.2613 2.5321 31 1 1.6506 1.0334 2.3402 32 1 1.7770 -3.5993 5.7919 33 1 4.4233 1.1769 5.5737 34 1 2.7542 0.6826 5.9450 35 1 4.0116 -0.5509 5.6890 36 1 5.2576 0.9206 3.4905 37 1 4.8648 -0.8060 3.3602 38 1 3.5969 1.2654 1.5187 39 1 5.1588 0.4966 1.1386 40 1 3.1613 -2.8418 1.8841 41 1 4.8761 -2.3939 1.7194 42 1 3.9134 -1.7485 3.0703 43 1 3.7399 -0.2099 -0.8822 44 1 4.9904 -1.3365 -0.3031 45 1 3.3591 -1.9375 -0.6850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221771229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:10 Heat of formation + Delta-G solvation = 40.875728 kcal Electronic energy + Delta-G solvation = -21865.954035 eV Core-core repulsion = 19112.800757 eV Total energy + Delta-G solvation = -2753.153278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76489 -38.01932 -35.61385 -34.34159 -32.42869 -30.26400 -29.20451 -28.80529 -27.44625 -26.48346 -25.43136 -23.77094 -21.86363 -20.43684 -18.92345 -18.58863 -17.30543 -16.78921 -16.17360 -16.08036 -15.92956 -15.40909 -14.97951 -14.37383 -14.19253 -13.95519 -13.87469 -13.45904 -13.27914 -13.08978 -12.85308 -12.76502 -12.67266 -12.59058 -12.46952 -12.37029 -12.22149 -12.05662 -11.93681 -11.54336 -11.42022 -11.17116 -11.14781 -10.85242 -10.61394 -10.55149 -8.78787 -8.43718 -8.09853 -6.17958 1.40877 1.42127 1.49274 2.42373 3.09345 3.17559 3.67767 3.96535 4.07894 4.12899 4.31364 4.35185 4.50655 4.56548 4.61445 4.72832 4.74857 4.79932 4.83767 4.86171 4.88821 4.94425 4.98628 5.02217 5.07773 5.09012 5.11000 5.20189 5.26179 5.32783 5.36946 5.44731 5.47282 5.54157 5.62056 5.69594 5.73640 5.96270 6.21073 6.54303 6.59055 6.67859 7.07649 7.21964 7.48622 8.95383 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.008782 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.438852 B = 3187.639656 C = 3627.452600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 C -0.184 4.184 4 N -0.546 5.546 5 C 0.092 3.908 6 C 0.164 3.836 7 H 0.080 0.920 8 C -0.513 4.513 9 H 0.042 0.958 10 C 0.027 3.973 11 N -0.915 5.915 12 Si 0.946 3.054 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.272 1.272 16 N -0.569 5.569 17 C 0.070 3.930 18 C 0.057 3.943 19 C -0.138 4.138 20 C 0.115 3.885 21 C -0.157 4.157 22 C -0.139 4.139 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.054 0.946 34 H 0.056 0.944 35 H -0.009 1.009 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 5.361 -10.567 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.242 4.242 4 N -0.271 5.271 5 C -0.036 4.036 6 C 0.060 3.940 7 H 0.097 0.903 8 C -0.553 4.553 9 H 0.061 0.939 10 C -0.173 4.173 11 N -0.554 5.554 12 Si 0.773 3.227 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.197 1.197 16 N -0.294 5.294 17 C -0.078 4.078 18 C -0.072 4.072 19 C -0.177 4.177 20 C 0.026 3.974 21 C -0.213 4.213 22 C -0.197 4.197 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.388 5.131 -10.662 12.308 hybrid contribution -0.239 -0.334 1.500 1.555 sum 3.149 4.797 -9.163 10.811 Atomic orbital electron populations 1.21827 0.94914 1.01524 1.01531 1.21861 0.95402 0.92777 0.93643 1.22650 1.01919 0.97971 1.01689 1.62391 1.09584 1.52915 1.02245 1.21815 0.97533 0.95401 0.88843 1.19827 0.88480 0.93619 0.92069 0.90286 1.21104 1.23544 0.96334 1.14293 0.93943 1.25583 0.97190 0.95637 0.98933 1.70003 1.39753 1.03510 1.42152 0.85797 0.80192 0.77003 0.79758 1.19879 1.21192 1.19719 1.59501 1.09306 1.55507 1.05131 1.21773 0.99505 0.96957 0.89610 1.21258 0.92773 0.98540 0.94632 1.22354 1.01377 0.99257 0.94676 1.20664 0.86422 0.94186 0.96125 1.22677 0.99411 0.97782 1.01475 1.22154 1.01362 1.02147 0.93992 0.94266 0.90413 0.93269 0.88657 0.91425 0.91029 0.93842 0.94015 0.95362 0.93038 0.92699 0.92487 0.99085 0.92309 0.96502 0.90421 0.89591 0.94807 0.92429 0.90876 0.90969 0.91233 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.92 71.98 0.64 -3.40 16 2 C 0.07 2.09 2.43 44.92 0.11 2.20 16 3 C -0.18 -4.86 7.26 71.98 0.52 -4.33 16 4 N -0.55 -20.41 4.38 -825.08 -3.61 -24.02 16 5 C 0.09 4.05 3.75 85.42 0.32 4.37 16 6 C 0.16 8.12 2.09 43.29 0.09 8.21 16 7 H 0.08 4.24 2.87 -2.39 -0.01 4.24 16 8 C -0.51 -27.95 5.67 25.60 0.15 -27.81 16 9 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 10 C 0.03 1.48 5.45 84.65 0.46 1.94 16 11 N -0.92 -52.57 12.64 21.45 0.27 -52.30 16 12 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 N -0.57 -25.39 4.19 -917.55 -3.85 -29.24 16 17 C 0.07 3.13 8.85 127.69 1.13 4.26 16 18 C 0.06 2.20 4.85 88.05 0.43 2.63 16 19 C -0.14 -4.45 4.12 30.39 0.13 -4.33 16 20 C 0.12 3.88 0.55 2.58 0.00 3.88 16 21 C -0.16 -6.19 6.52 71.98 0.47 -5.72 16 22 C -0.14 -3.58 6.72 71.98 0.48 -3.10 16 23 H 0.04 1.26 6.66 -2.39 -0.02 1.24 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 2.49 5.82 -2.39 -0.01 2.48 16 27 H 0.07 1.68 4.71 -2.38 -0.01 1.67 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.35 5.59 -2.39 -0.01 1.34 16 30 H 0.04 2.02 6.56 -2.39 -0.02 2.00 16 31 H 0.03 1.24 4.85 -2.39 -0.01 1.23 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.05 2.08 7.95 -2.39 -0.02 2.07 16 34 H 0.06 2.74 6.51 -2.38 -0.02 2.72 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.06 2.04 7.89 -2.39 -0.02 2.02 16 37 H 0.02 0.72 5.02 -2.39 -0.01 0.71 16 38 H 0.08 2.59 4.14 -2.39 -0.01 2.58 16 39 H 0.09 2.28 7.72 -2.38 -0.02 2.26 16 40 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 41 H 0.06 1.95 7.86 -2.39 -0.02 1.93 16 42 H 0.07 3.41 2.68 -2.39 -0.01 3.41 16 43 H 0.07 1.60 5.41 -2.39 -0.01 1.59 16 44 H 0.07 1.57 7.98 -2.39 -0.02 1.55 16 45 H 0.06 1.50 7.82 -2.39 -0.02 1.48 16 Total: -1.00 -59.16 304.12 0.74 -58.42 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.97 Total: 22.51 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.93 Total: -21.20 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -7.19 Total: -105.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.16 0.74 -58.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221771229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.296 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds