Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 N 1.46899 * 109.47189 * 240.00211 * 2 1 3 5 5 C 1.47744 * 111.00062 * 57.19490 * 4 2 1 6 6 H 1.08999 * 108.99504 * 313.43709 * 5 4 2 7 7 C 1.50701 * 108.99331 * 72.18846 * 5 4 2 8 8 H 1.07999 * 119.99884 * 359.97438 * 7 5 4 9 9 C 1.37877 * 120.00124 * 179.97438 * 7 5 4 10 10 N 1.31511 * 119.99895 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 119.99835 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47275 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46850 * 120.00287 * 11 9 7 14 14 H 1.48500 * 109.46980 * 239.99890 * 11 9 7 15 15 C 1.50784 * 111.91191 * 192.80994 * 5 4 2 16 16 N 1.47686 * 108.09863 * 94.60901 * 15 5 4 17 17 C 1.46909 * 111.00046 * 151.99452 * 16 15 5 18 18 C 1.40081 * 114.57268 * 278.68770 * 16 15 5 19 19 C 1.54514 * 111.50815 * 61.45319 * 18 16 15 20 20 C 1.48073 * 110.99771 * 289.59660 * 4 2 1 21 21 C 1.53000 * 108.79014 * 205.24410 * 20 4 2 22 22 C 1.52996 * 108.78930 * 323.57213 * 20 4 2 23 23 H 1.08997 * 109.47516 * 66.12037 * 1 2 3 24 24 H 1.09004 * 109.46988 * 186.11987 * 1 2 3 25 25 H 1.08997 * 109.46985 * 306.11832 * 1 2 3 26 26 H 1.09002 * 109.47336 * 120.00189 * 2 1 3 27 27 H 1.08997 * 109.47173 * 70.34612 * 3 2 1 28 28 H 1.08998 * 109.47215 * 190.34158 * 3 2 1 29 29 H 1.08997 * 109.47185 * 310.34109 * 3 2 1 30 30 H 0.97002 * 120.00290 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.73568 * 334.96260 * 15 5 4 32 32 H 1.08999 * 109.77614 * 214.28475 * 15 5 4 33 33 H 1.08991 * 109.47094 * 192.59288 * 17 16 15 34 34 H 1.09001 * 109.46810 * 312.59757 * 17 16 15 35 35 H 1.08999 * 109.46900 * 72.58653 * 17 16 15 36 36 H 1.08999 * 109.07426 * 300.93009 * 18 16 15 37 37 H 1.09005 * 109.01823 * 181.93722 * 18 16 15 38 38 H 1.09000 * 109.56105 * 164.14557 * 19 18 16 39 39 H 1.09007 * 109.65195 * 43.87874 * 19 18 16 40 40 H 1.09005 * 109.47141 * 38.78181 * 21 20 4 41 41 H 1.09001 * 109.47090 * 158.78504 * 21 20 4 42 42 H 1.09001 * 109.47065 * 278.79054 * 21 20 4 43 43 H 1.08998 * 109.47276 * 67.29208 * 22 20 4 44 44 H 1.09000 * 109.47308 * 187.29355 * 22 20 4 45 45 H 1.09000 * 109.47333 * 307.29307 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 1.4916 -0.0625 -2.4271 6 1 0.4215 0.1065 -2.3071 7 6 2.1760 1.2646 -2.6308 8 1 2.9206 1.6021 -1.9251 9 6 1.8514 2.0479 -3.7180 10 7 0.9451 1.6367 -4.5776 11 14 2.6992 3.6932 -3.9700 12 1 3.6717 3.9224 -2.8714 13 1 3.4153 3.6870 -5.2710 14 1 1.6851 4.7780 -3.9685 15 6 1.7189 -0.9236 -3.6439 16 7 0.5032 -1.7318 -3.8676 17 6 0.3471 -2.0653 -5.2898 18 6 0.4118 -2.8797 -3.0700 19 6 0.3711 -2.5233 -1.5670 20 6 1.7594 -2.1477 -1.1154 21 6 2.7776 -2.8818 -1.9902 22 6 1.9420 -2.5980 0.3353 23 1 -0.3634 0.4160 -0.9396 24 1 -0.3633 -1.0218 0.1096 25 1 -0.3633 0.6058 0.8301 26 1 1.8933 -0.5139 0.8900 27 1 1.8352 1.9003 0.9678 28 1 3.1142 1.4481 -0.1845 29 1 1.5338 2.0068 -0.7833 30 1 0.7164 2.1880 -5.3424 31 1 2.5720 -1.5809 -3.4755 32 1 1.9064 -0.2925 -4.5125 33 1 -0.6537 -2.4608 -5.4625 34 1 0.4921 -1.1680 -5.8914 35 1 1.0874 -2.8144 -5.5707 36 1 1.2755 -3.5164 -3.2618 37 1 -0.4962 -3.4229 -3.3319 38 1 0.0225 -3.3846 -0.9971 39 1 -0.3044 -1.6827 -1.4077 40 1 3.7502 -2.3978 -1.8998 41 1 2.8560 -3.9189 -1.6641 42 1 2.4521 -2.8514 -3.0300 43 1 1.1586 -2.1591 0.9533 44 1 1.8808 -3.6849 0.3889 45 1 2.9165 -2.2707 0.6975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221772089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = 75.134328 kcal Electronic energy + Delta-G solvation = -22105.052308 eV Core-core repulsion = 19353.384595 eV Total energy + Delta-G solvation = -2751.667714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19770 -36.34643 -34.30606 -32.48130 -30.29616 -28.88864 -27.53599 -26.65727 -26.39250 -25.01136 -23.81934 -21.56542 -20.48987 -18.90451 -17.34281 -16.29201 -15.82015 -15.25625 -14.52524 -14.40715 -14.11246 -13.89210 -13.24823 -12.91001 -12.62605 -12.23780 -12.13335 -11.95732 -11.71857 -11.59362 -11.31116 -11.09679 -10.96991 -10.81508 -10.71604 -10.60940 -10.53779 -10.47860 -10.12958 -9.99092 -9.83835 -9.71297 -9.32672 -9.05783 -8.64351 -8.24486 -6.97333 -6.91264 -5.86771 -3.89345 3.33782 3.42950 3.46807 4.46854 4.91748 4.95864 5.33783 5.43706 5.47496 5.65803 5.80327 5.85605 5.94024 6.00537 6.05624 6.11136 6.14528 6.16570 6.19778 6.30300 6.33020 6.36332 6.44107 6.48434 6.60887 6.64174 6.66596 6.72839 6.80094 6.86184 6.94775 7.06306 7.13599 7.16471 7.45491 7.60888 7.76563 7.99384 8.22395 8.33874 8.41617 8.57422 8.81632 9.18253 9.69842 11.15369 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.011093 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.237463 B = 2523.519732 C = 3415.638735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 C -0.142 4.142 4 N -0.527 5.527 5 C 0.217 3.783 6 H 0.029 0.971 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.054 3.946 10 N -0.881 5.881 11 Si 0.884 3.116 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.057 3.943 16 N -0.552 5.552 17 C 0.043 3.957 18 C 0.066 3.934 19 C -0.147 4.147 20 C 0.112 3.888 21 C -0.161 4.161 22 C -0.144 4.144 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.255 0.745 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.004 0.996 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -7.530 4.887 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.020 4.020 3 C -0.199 4.199 4 N -0.252 5.252 5 C 0.112 3.888 6 H 0.046 0.954 7 C -0.538 4.538 8 H 0.093 0.907 9 C -0.147 4.147 10 N -0.520 5.520 11 Si 0.713 3.287 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.069 4.069 16 N -0.276 5.276 17 C -0.105 4.105 18 C -0.064 4.064 19 C -0.186 4.186 20 C 0.022 3.978 21 C -0.218 4.218 22 C -0.201 4.201 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.100 -7.145 4.835 8.628 hybrid contribution 0.058 0.248 -0.437 0.506 sum -0.043 -6.897 4.398 8.180 Atomic orbital electron populations 1.22729 0.99202 1.00550 1.02469 1.21495 0.91714 0.95519 0.93264 1.22286 1.01856 0.95862 0.99921 1.62555 1.60270 0.98934 1.03478 1.19102 0.95396 0.91372 0.82975 0.95377 1.21634 1.22079 1.01502 1.08566 0.90708 1.24945 0.95597 0.97883 0.96257 1.70037 1.31626 1.36908 1.13474 0.86651 0.79473 0.84634 0.77928 1.19817 1.21423 1.21423 1.22622 0.86983 0.94236 1.03018 1.58963 1.42734 1.21537 1.04376 1.22178 0.98524 0.99830 0.89977 1.21169 0.98964 0.92431 0.93808 1.22392 0.99152 1.01732 0.95363 1.20593 0.93066 0.90209 0.93973 1.22771 0.99883 0.97704 1.01454 1.22166 1.01731 0.99558 0.96644 0.90653 0.93248 0.94020 0.91927 0.95898 0.92585 0.88977 0.93481 0.94492 0.87806 0.93481 0.90859 0.97761 0.95653 0.93438 0.92725 0.89552 0.92219 0.94330 0.89680 0.92728 0.93496 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 7.36 37.16 0.27 -3.23 16 2 C 0.09 1.69 2.40 -67.72 -0.16 1.53 16 3 C -0.14 -2.81 7.59 37.16 0.28 -2.53 16 4 N -0.53 -10.80 4.12 -205.70 -0.85 -11.65 16 5 C 0.22 5.11 1.15 -69.51 -0.08 5.03 16 6 H 0.03 0.76 4.66 -51.93 -0.24 0.52 16 7 C -0.50 -12.79 6.04 -34.44 -0.21 -13.00 16 8 H 0.07 1.93 4.99 -52.49 -0.26 1.67 16 9 C 0.05 1.42 5.03 -17.82 -0.09 1.33 16 10 N -0.88 -23.97 11.41 55.43 0.63 -23.34 16 11 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.06 1.31 4.38 -4.50 -0.02 1.29 16 16 N -0.55 -11.50 4.23 -248.01 -1.05 -12.54 16 17 C 0.04 0.81 9.52 60.07 0.57 1.38 16 18 C 0.07 1.19 4.84 -6.55 -0.03 1.16 16 19 C -0.15 -2.59 4.26 -27.07 -0.12 -2.71 16 20 C 0.11 1.98 0.55 -132.09 -0.07 1.90 16 21 C -0.16 -2.80 6.52 37.16 0.24 -2.56 16 22 C -0.14 -2.18 6.71 37.16 0.25 -1.93 16 23 H 0.07 1.62 5.68 -51.93 -0.29 1.33 16 24 H 0.05 0.85 4.92 -51.93 -0.26 0.59 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.09 5.54 -51.93 -0.29 0.81 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.15 7.03 -51.93 -0.37 0.78 16 29 H 0.09 2.07 5.71 -51.93 -0.30 1.78 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.04 0.83 4.03 -51.93 -0.21 0.63 16 32 H 0.10 2.71 5.17 -51.93 -0.27 2.44 16 33 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.07 1.49 7.73 -51.93 -0.40 1.09 16 35 H 0.00 0.07 8.13 -51.93 -0.42 -0.35 16 36 H 0.03 0.46 5.03 -51.93 -0.26 0.19 16 37 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 38 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 39 H 0.09 1.69 4.18 -51.93 -0.22 1.48 16 40 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.04 0.58 7.86 -51.93 -0.41 0.17 16 42 H 0.09 1.58 2.68 -51.93 -0.14 1.44 16 43 H 0.05 0.81 5.71 -51.93 -0.30 0.51 16 44 H 0.05 0.63 7.98 -51.93 -0.41 0.21 16 45 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -26.11 298.39 -8.04 -34.15 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.09 Total: 5.43 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 0.84 Total: -12.33 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -1.26 Total: -47.53 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.11 -8.04 -34.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221772089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.284 kcal (2) G-P(sol) polarization free energy of solvation -26.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds