Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 N 1.46899 * 109.47189 * 240.00211 * 2 1 3 5 5 C 1.47744 * 111.00062 * 57.19490 * 4 2 1 6 6 H 1.08999 * 108.99504 * 313.43709 * 5 4 2 7 7 C 1.50701 * 108.99331 * 72.18846 * 5 4 2 8 8 H 1.07999 * 119.99884 * 359.97438 * 7 5 4 9 9 C 1.37877 * 120.00124 * 179.97438 * 7 5 4 10 10 N 1.31511 * 119.99895 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 119.99835 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47275 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46850 * 120.00287 * 11 9 7 14 14 H 1.48500 * 109.46980 * 239.99890 * 11 9 7 15 15 C 1.50784 * 111.91191 * 192.80994 * 5 4 2 16 16 N 1.47686 * 108.09863 * 94.60901 * 15 5 4 17 17 C 1.46909 * 111.00046 * 151.99452 * 16 15 5 18 18 C 1.40081 * 114.57268 * 278.68770 * 16 15 5 19 19 C 1.54514 * 111.50815 * 61.45319 * 18 16 15 20 20 C 1.48073 * 110.99771 * 289.59660 * 4 2 1 21 21 C 1.53000 * 108.79014 * 205.24410 * 20 4 2 22 22 C 1.52996 * 108.78930 * 323.57213 * 20 4 2 23 23 H 1.08997 * 109.47516 * 66.12037 * 1 2 3 24 24 H 1.09004 * 109.46988 * 186.11987 * 1 2 3 25 25 H 1.08997 * 109.46985 * 306.11832 * 1 2 3 26 26 H 1.09002 * 109.47336 * 120.00189 * 2 1 3 27 27 H 1.08997 * 109.47173 * 70.34612 * 3 2 1 28 28 H 1.08998 * 109.47215 * 190.34158 * 3 2 1 29 29 H 1.08997 * 109.47185 * 310.34109 * 3 2 1 30 30 H 0.97002 * 120.00290 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.73568 * 334.96260 * 15 5 4 32 32 H 1.08999 * 109.77614 * 214.28475 * 15 5 4 33 33 H 1.08991 * 109.47094 * 192.59288 * 17 16 15 34 34 H 1.09001 * 109.46810 * 312.59757 * 17 16 15 35 35 H 1.08999 * 109.46900 * 72.58653 * 17 16 15 36 36 H 1.08999 * 109.07426 * 300.93009 * 18 16 15 37 37 H 1.09005 * 109.01823 * 181.93722 * 18 16 15 38 38 H 1.09000 * 109.56105 * 164.14557 * 19 18 16 39 39 H 1.09007 * 109.65195 * 43.87874 * 19 18 16 40 40 H 1.09005 * 109.47141 * 38.78181 * 21 20 4 41 41 H 1.09001 * 109.47090 * 158.78504 * 21 20 4 42 42 H 1.09001 * 109.47065 * 278.79054 * 21 20 4 43 43 H 1.08998 * 109.47276 * 67.29208 * 22 20 4 44 44 H 1.09000 * 109.47308 * 187.29355 * 22 20 4 45 45 H 1.09000 * 109.47333 * 307.29307 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 1.4916 -0.0625 -2.4271 6 1 0.4215 0.1065 -2.3071 7 6 2.1760 1.2646 -2.6308 8 1 2.9206 1.6021 -1.9251 9 6 1.8514 2.0479 -3.7180 10 7 0.9451 1.6367 -4.5776 11 14 2.6992 3.6932 -3.9700 12 1 3.6717 3.9224 -2.8714 13 1 3.4153 3.6870 -5.2710 14 1 1.6851 4.7780 -3.9685 15 6 1.7189 -0.9236 -3.6439 16 7 0.5032 -1.7318 -3.8676 17 6 0.3471 -2.0653 -5.2898 18 6 0.4118 -2.8797 -3.0700 19 6 0.3711 -2.5233 -1.5670 20 6 1.7594 -2.1477 -1.1154 21 6 2.7776 -2.8818 -1.9902 22 6 1.9420 -2.5980 0.3353 23 1 -0.3634 0.4160 -0.9396 24 1 -0.3633 -1.0218 0.1096 25 1 -0.3633 0.6058 0.8301 26 1 1.8933 -0.5139 0.8900 27 1 1.8352 1.9003 0.9678 28 1 3.1142 1.4481 -0.1845 29 1 1.5338 2.0068 -0.7833 30 1 0.7164 2.1880 -5.3424 31 1 2.5720 -1.5809 -3.4755 32 1 1.9064 -0.2925 -4.5125 33 1 -0.6537 -2.4608 -5.4625 34 1 0.4921 -1.1680 -5.8914 35 1 1.0874 -2.8144 -5.5707 36 1 1.2755 -3.5164 -3.2618 37 1 -0.4962 -3.4229 -3.3319 38 1 0.0225 -3.3846 -0.9971 39 1 -0.3044 -1.6827 -1.4077 40 1 3.7502 -2.3978 -1.8998 41 1 2.8560 -3.9189 -1.6641 42 1 2.4521 -2.8514 -3.0300 43 1 1.1586 -2.1591 0.9533 44 1 1.8808 -3.6849 0.3889 45 1 2.9165 -2.2707 0.6975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221772089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = 58.489718 kcal Electronic energy + Delta-G solvation = -22105.774073 eV Core-core repulsion = 19353.384595 eV Total energy + Delta-G solvation = -2752.389478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72382 -37.89947 -35.96482 -34.22849 -32.03412 -30.30524 -29.07132 -28.22076 -27.96400 -26.66735 -25.38860 -23.21616 -22.11116 -20.45672 -18.86885 -18.21149 -17.32345 -16.84483 -16.28549 -16.04638 -15.69901 -15.41950 -14.81491 -14.39710 -14.21884 -13.92344 -13.61532 -13.54225 -13.13635 -12.99095 -12.85089 -12.83384 -12.59289 -12.43324 -12.27106 -12.21424 -12.10914 -12.09243 -11.77856 -11.58446 -11.42217 -11.32474 -10.84902 -10.75508 -10.42239 -10.21535 -8.56466 -8.54228 -7.87834 -5.94660 1.42431 1.47072 1.55878 2.51746 3.28119 3.41217 3.50888 3.98455 4.11877 4.24719 4.33624 4.50536 4.54313 4.54542 4.57773 4.67392 4.70568 4.79250 4.83093 4.87215 4.96279 4.98402 5.04488 5.10170 5.10924 5.13005 5.17398 5.22628 5.32251 5.36245 5.38983 5.48002 5.52529 5.66095 5.74008 5.91394 5.96180 6.00733 6.48665 6.60811 6.71847 6.90992 7.11038 7.23378 7.67420 9.12186 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.011093 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.237463 B = 2523.519732 C = 3415.638735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 C -0.136 4.136 4 N -0.538 5.538 5 C 0.232 3.768 6 H -0.004 1.004 7 C -0.501 4.501 8 H 0.069 0.931 9 C 0.011 3.989 10 N -0.905 5.905 11 Si 0.936 3.064 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.068 3.932 16 N -0.569 5.569 17 C 0.048 3.952 18 C 0.062 3.938 19 C -0.144 4.144 20 C 0.104 3.896 21 C -0.156 4.156 22 C -0.138 4.138 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.251 0.749 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -9.320 6.639 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 C -0.193 4.193 4 N -0.263 5.263 5 C 0.125 3.875 6 H 0.014 0.986 7 C -0.540 4.540 8 H 0.087 0.913 9 C -0.187 4.187 10 N -0.545 5.545 11 Si 0.764 3.236 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.217 1.217 15 C -0.058 4.058 16 N -0.293 5.293 17 C -0.100 4.100 18 C -0.067 4.067 19 C -0.183 4.183 20 C 0.015 3.985 21 C -0.213 4.213 22 C -0.195 4.195 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.100 -8.945 6.600 11.117 hybrid contribution -0.011 0.774 -0.946 1.222 sum 0.090 -8.171 5.654 9.937 Atomic orbital electron populations 1.22568 0.98695 1.01432 1.00956 1.21603 0.92070 0.95009 0.93541 1.22138 1.00548 0.96496 1.00132 1.62459 1.60335 1.00824 1.02722 1.18762 0.93125 0.90974 0.84657 0.98643 1.21921 1.21476 1.02699 1.07948 0.91285 1.25512 0.96354 1.00430 0.96432 1.70168 1.32919 1.37646 1.13790 0.85836 0.78501 0.81613 0.77603 1.19400 1.21562 1.21718 1.22300 0.88273 0.94104 1.01156 1.58897 1.41625 1.23053 1.05764 1.22121 1.00088 0.99073 0.88727 1.21274 1.00095 0.91526 0.93822 1.22362 0.98510 1.02012 0.95374 1.20768 0.93339 0.88300 0.96136 1.22675 0.98824 0.99234 1.00540 1.22105 1.01840 1.01218 0.94314 0.94555 0.91834 0.92320 0.89392 0.93224 0.93778 0.92392 0.93990 0.94003 0.91475 0.91581 0.93472 0.96145 0.94493 0.91953 0.89765 0.91802 0.93640 0.91407 0.91210 0.92213 0.90966 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.35 7.36 71.98 0.53 -5.82 16 2 C 0.09 3.15 2.40 44.91 0.11 3.26 16 3 C -0.14 -5.29 7.59 71.98 0.55 -4.75 16 4 N -0.54 -21.63 4.12 -804.70 -3.32 -24.95 16 5 C 0.23 11.11 1.15 43.29 0.05 11.16 16 6 H 0.00 -0.21 4.66 -2.39 -0.01 -0.22 16 7 C -0.50 -26.44 6.04 25.60 0.15 -26.29 16 8 H 0.07 3.65 4.99 -2.91 -0.01 3.64 16 9 C 0.01 0.59 5.03 84.66 0.43 1.01 16 10 N -0.90 -51.21 11.41 21.45 0.24 -50.97 16 11 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 15 C 0.07 3.19 4.38 85.43 0.37 3.56 16 16 N -0.57 -23.64 4.23 -938.57 -3.97 -27.61 16 17 C 0.05 1.79 9.52 127.69 1.22 3.00 16 18 C 0.06 2.11 4.84 88.05 0.43 2.54 16 19 C -0.14 -4.69 4.26 30.38 0.13 -4.56 16 20 C 0.10 3.43 0.55 2.57 0.00 3.43 16 21 C -0.16 -5.03 6.52 71.98 0.47 -4.56 16 22 C -0.14 -3.60 6.71 71.98 0.48 -3.12 16 23 H 0.04 1.59 5.68 -2.39 -0.01 1.57 16 24 H 0.06 2.05 4.92 -2.39 -0.01 2.04 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.09 2.80 5.54 -2.39 -0.01 2.79 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.79 7.03 -2.39 -0.02 1.77 16 29 H 0.06 2.65 5.71 -2.39 -0.01 2.64 16 30 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.04 1.90 4.03 -2.39 -0.01 1.89 16 32 H 0.07 3.65 5.17 -2.39 -0.01 3.63 16 33 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.05 1.98 7.73 -2.39 -0.02 1.96 16 35 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 36 H 0.04 1.21 5.03 -2.39 -0.01 1.20 16 37 H 0.06 1.94 8.01 -2.38 -0.02 1.92 16 38 H 0.08 2.24 7.72 -2.39 -0.02 2.22 16 39 H 0.06 2.42 4.18 -2.38 -0.01 2.41 16 40 H 0.04 1.58 8.11 -2.38 -0.02 1.56 16 41 H 0.07 1.77 7.86 -2.39 -0.02 1.75 16 42 H 0.07 2.47 2.68 -2.39 -0.01 2.46 16 43 H 0.06 1.51 5.71 -2.39 -0.01 1.49 16 44 H 0.07 1.56 7.98 -2.39 -0.02 1.54 16 45 H 0.06 1.53 7.85 -2.39 -0.02 1.51 16 Total: -1.00 -57.89 298.39 0.88 -57.01 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.98 Total: 21.68 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 4.91 Total: -21.13 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -7.04 Total: -103.53 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -57.89 0.88 -57.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221772089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.504 kcal (2) G-P(sol) polarization free energy of solvation -57.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds