Wall clock time and date at job start Mon Mar 30 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47005 * 2 1 4 4 C 1.53002 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47620 * 174.62092 * 4 3 2 6 6 C 1.48066 * 111.00090 * 68.96730 * 5 4 3 7 7 C 1.53697 * 112.46867 * 192.19392 * 6 5 4 8 8 C 1.53002 * 108.95527 * 197.88028 * 7 6 5 9 9 C 1.52999 * 108.88583 * 79.18551 * 7 6 5 10 10 C 1.50801 * 112.10074 * 318.55296 * 7 6 5 11 11 N 1.47910 * 108.49684 * 92.55142 * 10 7 6 12 12 C 1.40012 * 114.06941 * 280.07249 * 11 10 7 13 13 C 1.44573 * 110.99976 * 301.27011 * 5 4 3 14 14 H 1.09002 * 109.57277 * 100.53447 * 13 5 4 15 15 C 1.50704 * 109.57447 * 340.16150 * 13 5 4 16 16 H 1.08001 * 120.00004 * 355.26455 * 15 13 5 17 17 C 1.37877 * 120.00071 * 175.25796 * 15 13 5 18 18 N 1.31518 * 119.99916 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46865 * 60.00534 * 19 17 15 21 21 H 1.48505 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46936 * 300.00547 * 19 17 15 23 23 H 1.09007 * 109.47119 * 59.99862 * 1 2 3 24 24 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47176 * 300.00192 * 1 2 3 26 26 H 1.09002 * 109.46722 * 240.00038 * 2 1 3 27 27 H 1.08998 * 109.46875 * 120.00293 * 2 1 3 28 28 H 1.09002 * 109.47350 * 60.00422 * 3 2 1 29 29 H 1.08998 * 109.47543 * 299.99884 * 3 2 1 30 30 H 1.09002 * 109.46754 * 54.61303 * 4 3 2 31 31 H 1.09006 * 109.47199 * 294.62226 * 4 3 2 32 32 H 1.09001 * 108.87777 * 71.42271 * 6 5 4 33 33 H 1.08999 * 108.88040 * 312.96641 * 6 5 4 34 34 H 1.08994 * 109.47128 * 182.58461 * 8 7 6 35 35 H 1.09002 * 109.47009 * 302.58255 * 8 7 6 36 36 H 1.08998 * 109.47275 * 62.58603 * 8 7 6 37 37 H 1.09007 * 109.46944 * 273.60452 * 9 7 6 38 38 H 1.09000 * 109.47496 * 33.59827 * 9 7 6 39 39 H 1.08998 * 109.47076 * 153.60917 * 9 7 6 40 40 H 1.08998 * 109.62912 * 332.85440 * 10 7 6 41 41 H 1.08994 * 109.63350 * 212.25153 * 10 7 6 42 42 H 1.00894 * 111.00091 * 153.77734 * 11 10 7 43 43 H 1.09004 * 108.96131 * 301.13263 * 12 11 10 44 44 H 1.09006 * 108.89150 * 182.43167 * 12 11 10 45 45 H 0.96997 * 119.99660 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8213 -0.1292 6 6 3.7684 3.6052 1.0927 7 6 3.9895 5.1126 0.8902 8 6 4.1085 5.7858 2.2590 9 6 2.7820 5.6957 0.1534 10 6 5.2363 5.4010 0.0924 11 7 4.8665 5.5023 -1.3361 12 6 4.7071 4.2661 -1.9737 13 6 3.5725 3.4318 -1.3457 14 1 2.7269 4.0800 -1.1157 15 6 3.1409 2.3584 -2.3115 16 1 3.2961 1.3180 -2.0672 17 6 2.5478 2.7047 -3.5071 18 7 2.3592 3.9718 -3.8049 19 14 2.0136 1.3742 -4.7046 20 1 1.0140 0.4922 -4.0505 21 1 1.4083 2.0036 -5.9058 22 1 3.1942 0.5696 -5.1094 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.8473 -0.8370 31 1 3.9330 1.0145 0.9351 32 1 4.4170 3.2584 1.8972 33 1 2.7309 3.4364 1.3810 34 1 4.2197 6.8619 2.1262 35 1 3.2109 5.5826 2.8430 36 1 4.9797 5.3925 2.7828 37 1 2.9256 5.5877 -0.9218 38 1 1.8803 5.1626 0.4548 39 1 2.6800 6.7520 0.4020 40 1 5.9535 4.5916 0.2285 41 1 5.6743 6.3421 0.4249 42 1 5.5183 6.0866 -1.8378 43 1 5.6400 3.7070 -1.9006 44 1 4.4795 4.4383 -3.0258 45 1 1.9423 4.2154 -4.6461 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221774413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:55 Heat of formation + Delta-G solvation = 24.660680 kcal Electronic energy + Delta-G solvation = -21426.448489 eV Core-core repulsion = 18672.592073 eV Total energy + Delta-G solvation = -2753.856415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.40887 -36.12018 -34.06096 -33.17884 -32.09896 -28.36812 -27.71851 -26.56226 -25.53530 -24.35785 -23.30919 -21.48022 -20.58587 -18.78342 -17.86496 -16.62196 -15.66116 -15.04321 -14.51742 -14.25447 -14.07436 -13.83607 -13.66097 -13.05795 -12.76682 -12.64148 -12.31438 -12.04352 -11.85006 -11.49165 -11.40156 -11.21362 -10.98524 -10.75047 -10.62920 -10.57520 -10.37112 -10.31605 -10.06395 -10.02464 -9.89952 -9.61820 -9.52638 -9.34257 -8.52444 -8.42906 -7.16678 -6.78498 -5.99615 -4.00558 3.30827 3.36202 3.38830 4.41926 5.04482 5.14317 5.33119 5.36429 5.54061 5.58420 5.65151 5.75324 5.78904 6.03128 6.06321 6.11771 6.19476 6.22345 6.30695 6.32729 6.36975 6.41891 6.45444 6.52264 6.59759 6.69585 6.72739 6.77460 6.87849 6.90868 6.95747 7.02095 7.12314 7.39021 7.53137 7.63786 7.83580 7.98791 8.10088 8.26077 8.45916 8.57038 8.84909 9.08283 9.60935 11.06616 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.010024 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.614892 B = 2792.516187 C = 3843.649120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.162 4.162 4 C 0.078 3.922 5 N -0.551 5.551 6 C 0.074 3.926 7 C -0.062 4.062 8 C -0.136 4.136 9 C -0.151 4.151 10 C 0.082 3.918 11 N -0.688 5.688 12 C 0.085 3.915 13 C 0.207 3.793 14 H 0.049 0.951 15 C -0.523 4.523 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.880 5.880 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.124 0.876 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.323 0.677 43 H -0.010 1.010 44 H 0.089 0.911 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -0.066 7.904 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.200 4.200 4 C -0.050 4.050 5 N -0.274 5.274 6 C -0.054 4.054 7 C -0.063 4.063 8 C -0.194 4.194 9 C -0.208 4.208 10 C -0.047 4.047 11 N -0.318 5.318 12 C -0.046 4.046 13 C 0.100 3.900 14 H 0.066 0.934 15 C -0.561 4.561 16 H 0.092 0.908 17 C -0.139 4.139 18 N -0.518 5.518 19 Si 0.711 3.289 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.204 1.204 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.142 0.858 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.008 0.992 44 H 0.107 0.893 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.278 0.078 7.834 7.938 hybrid contribution -0.286 -0.956 -0.633 1.182 sum 0.993 -0.878 7.201 7.322 Atomic orbital electron populations 1.21751 0.96923 1.00341 1.01584 1.21393 0.95015 0.98304 1.00629 1.22572 0.98116 0.95884 1.03442 1.21942 0.92502 0.91214 0.99346 1.61071 1.61805 1.01904 1.02662 1.22387 0.97853 0.92113 0.93067 1.20307 0.97232 0.94419 0.94296 1.21921 1.00778 0.99862 0.96819 1.22427 0.94474 0.97514 1.06364 1.21531 0.95257 0.98665 0.89274 1.57824 1.53016 1.19047 1.01923 1.21032 0.96851 0.86945 0.99778 1.19440 0.92508 0.93349 0.84735 0.93409 1.21695 1.38518 0.93574 1.02358 0.90827 1.24950 0.96050 0.95053 0.97834 1.69963 1.42937 1.15263 1.23624 0.86800 0.78972 0.82293 0.80867 1.20192 1.21457 1.20404 0.92604 0.93828 0.93472 0.92367 0.93610 0.94436 0.87183 0.90014 0.94632 0.93411 0.95627 0.92940 0.93255 0.93402 0.85840 0.95105 0.95048 0.94448 0.92950 0.85872 0.99174 0.89319 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.16 -3.15 4.20 -26.73 -0.11 -3.26 16 4 C 0.08 1.56 4.77 -3.83 -0.02 1.54 16 5 N -0.55 -11.69 4.12 -227.64 -0.94 -12.63 16 6 C 0.07 1.39 4.35 -2.82 -0.01 1.38 16 7 C -0.06 -1.09 0.72 -155.25 -0.11 -1.20 16 8 C -0.14 -1.94 7.94 37.16 0.29 -1.65 16 9 C -0.15 -2.95 7.10 37.16 0.26 -2.69 16 10 C 0.08 1.45 5.54 -4.37 -0.02 1.43 16 11 N -0.69 -13.67 4.40 -118.32 -0.52 -14.19 16 12 C 0.08 1.97 5.21 -6.75 -0.04 1.93 16 13 C 0.21 4.88 1.11 -69.48 -0.08 4.81 16 14 H 0.05 1.25 4.29 -51.93 -0.22 1.02 16 15 C -0.52 -13.23 5.50 -34.44 -0.19 -13.42 16 16 H 0.07 1.85 4.51 -52.49 -0.24 1.61 16 17 C 0.06 1.67 5.18 -17.82 -0.09 1.57 16 18 N -0.88 -23.94 11.82 55.43 0.66 -23.28 16 19 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.71 6.64 -51.93 -0.34 0.37 16 29 H 0.11 2.54 5.29 -51.93 -0.27 2.27 16 30 H 0.08 1.74 5.83 -51.93 -0.30 1.44 16 31 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 33 H 0.03 0.50 5.69 -51.93 -0.30 0.20 16 34 H 0.05 0.70 8.01 -51.93 -0.42 0.28 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.12 2.83 4.05 -51.92 -0.21 2.62 16 38 H 0.03 0.61 7.45 -51.93 -0.39 0.22 16 39 H 0.03 0.55 7.84 -51.93 -0.41 0.15 16 40 H 0.04 0.71 7.57 -51.93 -0.39 0.32 16 41 H 0.05 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.32 5.77 8.85 -39.29 -0.35 5.42 16 43 H -0.01 -0.24 8.07 -51.93 -0.42 -0.66 16 44 H 0.09 2.30 6.31 -51.93 -0.33 1.97 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -25.84 318.15 -8.85 -34.68 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.91 Total: 8.68 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 0.10 Total: -13.61 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.80 Total: -50.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -25.84 -8.85 -34.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221774413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.344 kcal (2) G-P(sol) polarization free energy of solvation -25.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds