Wall clock time and date at job start Mon Mar 30 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47005 * 2 1 4 4 C 1.53002 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47620 * 174.62092 * 4 3 2 6 6 C 1.48066 * 111.00090 * 68.96730 * 5 4 3 7 7 C 1.53697 * 112.46867 * 192.19392 * 6 5 4 8 8 C 1.53002 * 108.95527 * 197.88028 * 7 6 5 9 9 C 1.52999 * 108.88583 * 79.18551 * 7 6 5 10 10 C 1.50801 * 112.10074 * 318.55296 * 7 6 5 11 11 N 1.47910 * 108.49684 * 92.55142 * 10 7 6 12 12 C 1.40012 * 114.06941 * 280.07249 * 11 10 7 13 13 C 1.44573 * 110.99976 * 301.27011 * 5 4 3 14 14 H 1.09002 * 109.57277 * 100.53447 * 13 5 4 15 15 C 1.50704 * 109.57447 * 340.16150 * 13 5 4 16 16 H 1.08001 * 120.00004 * 355.26455 * 15 13 5 17 17 C 1.37877 * 120.00071 * 175.25796 * 15 13 5 18 18 N 1.31518 * 119.99916 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46865 * 60.00534 * 19 17 15 21 21 H 1.48505 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46936 * 300.00547 * 19 17 15 23 23 H 1.09007 * 109.47119 * 59.99862 * 1 2 3 24 24 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47176 * 300.00192 * 1 2 3 26 26 H 1.09002 * 109.46722 * 240.00038 * 2 1 3 27 27 H 1.08998 * 109.46875 * 120.00293 * 2 1 3 28 28 H 1.09002 * 109.47350 * 60.00422 * 3 2 1 29 29 H 1.08998 * 109.47543 * 299.99884 * 3 2 1 30 30 H 1.09002 * 109.46754 * 54.61303 * 4 3 2 31 31 H 1.09006 * 109.47199 * 294.62226 * 4 3 2 32 32 H 1.09001 * 108.87777 * 71.42271 * 6 5 4 33 33 H 1.08999 * 108.88040 * 312.96641 * 6 5 4 34 34 H 1.08994 * 109.47128 * 182.58461 * 8 7 6 35 35 H 1.09002 * 109.47009 * 302.58255 * 8 7 6 36 36 H 1.08998 * 109.47275 * 62.58603 * 8 7 6 37 37 H 1.09007 * 109.46944 * 273.60452 * 9 7 6 38 38 H 1.09000 * 109.47496 * 33.59827 * 9 7 6 39 39 H 1.08998 * 109.47076 * 153.60917 * 9 7 6 40 40 H 1.08998 * 109.62912 * 332.85440 * 10 7 6 41 41 H 1.08994 * 109.63350 * 212.25153 * 10 7 6 42 42 H 1.00894 * 111.00091 * 153.77734 * 11 10 7 43 43 H 1.09004 * 108.96131 * 301.13263 * 12 11 10 44 44 H 1.09006 * 108.89150 * 182.43167 * 12 11 10 45 45 H 0.96997 * 119.99660 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8213 -0.1292 6 6 3.7684 3.6052 1.0927 7 6 3.9895 5.1126 0.8902 8 6 4.1085 5.7858 2.2590 9 6 2.7820 5.6957 0.1534 10 6 5.2363 5.4010 0.0924 11 7 4.8665 5.5023 -1.3361 12 6 4.7071 4.2661 -1.9737 13 6 3.5725 3.4318 -1.3457 14 1 2.7269 4.0800 -1.1157 15 6 3.1409 2.3584 -2.3115 16 1 3.2961 1.3180 -2.0672 17 6 2.5478 2.7047 -3.5071 18 7 2.3592 3.9718 -3.8049 19 14 2.0136 1.3742 -4.7046 20 1 1.0140 0.4922 -4.0505 21 1 1.4083 2.0036 -5.9058 22 1 3.1942 0.5696 -5.1094 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.8473 -0.8370 31 1 3.9330 1.0145 0.9351 32 1 4.4170 3.2584 1.8972 33 1 2.7309 3.4364 1.3810 34 1 4.2197 6.8619 2.1262 35 1 3.2109 5.5826 2.8430 36 1 4.9797 5.3925 2.7828 37 1 2.9256 5.5877 -0.9218 38 1 1.8803 5.1626 0.4548 39 1 2.6800 6.7520 0.4020 40 1 5.9535 4.5916 0.2285 41 1 5.6743 6.3421 0.4249 42 1 5.5183 6.0866 -1.8378 43 1 5.6400 3.7070 -1.9006 44 1 4.4795 4.4383 -3.0258 45 1 1.9423 4.2154 -4.6461 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221774413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:54 Heat of formation + Delta-G solvation = 9.169429 kcal Electronic energy + Delta-G solvation = -21427.120240 eV Core-core repulsion = 18672.592073 eV Total energy + Delta-G solvation = -2754.528166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02379 -37.67841 -35.72001 -34.68900 -33.93647 -30.01915 -29.33576 -27.99310 -27.13128 -25.94060 -25.01982 -23.06241 -22.09981 -20.54796 -19.36673 -18.46154 -17.35293 -16.75066 -16.11540 -16.03636 -15.56698 -15.40587 -15.22714 -14.54980 -14.27801 -14.14487 -13.98727 -13.43275 -13.32549 -13.15244 -12.91718 -12.76630 -12.64032 -12.52734 -12.29853 -12.04695 -11.94276 -11.78542 -11.68722 -11.55619 -11.49621 -11.26473 -11.17185 -10.96309 -10.46319 -10.33334 -8.81311 -8.50571 -8.00905 -6.04740 1.42221 1.43673 1.48989 2.46863 3.25736 3.48453 3.69144 3.97503 4.13747 4.18797 4.24086 4.35780 4.43042 4.57897 4.69320 4.74140 4.84574 4.86440 4.87609 4.93819 4.95576 4.98379 5.02444 5.06830 5.11990 5.14123 5.20946 5.22124 5.36568 5.39026 5.41757 5.47521 5.53791 5.64617 5.82993 5.84129 5.98818 6.11899 6.23111 6.55782 6.68310 6.93900 7.07467 7.14261 7.59611 9.04586 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.010024 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.614892 B = 2792.516187 C = 3843.649120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.150 4.150 4 C 0.079 3.921 5 N -0.560 5.560 6 C 0.073 3.927 7 C -0.063 4.063 8 C -0.127 4.127 9 C -0.142 4.142 10 C 0.086 3.914 11 N -0.693 5.693 12 C 0.104 3.896 13 C 0.216 3.784 14 H 0.025 0.975 15 C -0.523 4.523 16 H 0.074 0.926 17 C 0.020 3.980 18 N -0.907 5.907 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.276 1.276 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.015 0.985 39 H 0.046 0.954 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.335 0.665 43 H -0.026 1.026 44 H 0.055 0.945 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -0.443 9.999 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.188 4.188 4 C -0.049 4.049 5 N -0.283 5.283 6 C -0.055 4.055 7 C -0.064 4.064 8 C -0.186 4.186 9 C -0.199 4.199 10 C -0.043 4.043 11 N -0.324 5.324 12 C -0.028 4.028 13 C 0.108 3.892 14 H 0.043 0.957 15 C -0.562 4.562 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.547 5.547 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.217 1.217 22 H -0.202 1.202 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.102 0.898 42 H 0.154 0.846 43 H -0.008 1.008 44 H 0.073 0.927 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.726 -0.306 9.943 10.097 hybrid contribution -0.415 -0.829 -1.231 1.541 sum 1.311 -1.135 8.712 8.883 Atomic orbital electron populations 1.21729 0.95864 1.01712 1.01072 1.21371 0.95979 0.96415 1.01296 1.22343 0.97747 0.97317 1.01442 1.21925 0.92766 0.90490 0.99691 1.61047 1.61831 1.02676 1.02792 1.22487 0.97829 0.92907 0.92234 1.20373 0.96033 0.93763 0.96209 1.21840 1.01915 1.00356 0.94442 1.22260 0.94897 0.98453 1.04312 1.21595 0.95182 0.99931 0.87563 1.57713 1.53839 1.17496 1.03324 1.20648 0.95726 0.88104 0.98299 1.19180 0.91807 0.92613 0.85578 0.95717 1.21987 1.37531 0.94097 1.02541 0.90847 1.25532 0.96584 0.96488 0.99353 1.70090 1.44150 1.16656 1.23791 0.85985 0.78586 0.80305 0.79053 1.19715 1.21726 1.20201 0.94658 0.91515 0.92474 0.93361 0.91184 0.94157 0.91252 0.91832 0.92239 0.91471 0.96376 0.91582 0.92680 0.91661 0.89340 0.96571 0.93497 0.95381 0.89839 0.84618 1.00797 0.92655 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.11 -3.64 5.93 30.59 0.18 -3.46 16 3 C -0.15 -5.78 4.20 30.59 0.13 -5.65 16 4 C 0.08 3.10 4.77 86.30 0.41 3.51 16 5 N -0.56 -23.57 4.12 -874.11 -3.60 -27.16 16 6 C 0.07 2.63 4.35 86.31 0.38 3.01 16 7 C -0.06 -2.09 0.72 -52.66 -0.04 -2.13 16 8 C -0.13 -3.18 7.94 71.98 0.57 -2.60 16 9 C -0.14 -5.48 7.10 71.98 0.51 -4.97 16 10 C 0.09 2.88 5.54 85.39 0.47 3.35 16 11 N -0.69 -27.47 4.40 -528.26 -2.32 -29.79 16 12 C 0.10 4.95 5.21 87.95 0.46 5.41 16 13 C 0.22 10.44 1.11 45.01 0.05 10.49 16 14 H 0.03 1.35 4.29 -2.39 -0.01 1.34 16 15 C -0.52 -27.21 5.50 25.60 0.14 -27.07 16 16 H 0.07 3.76 4.51 -2.91 -0.01 3.75 16 17 C 0.02 1.07 5.18 84.65 0.44 1.51 16 18 N -0.91 -51.27 11.82 21.45 0.25 -51.01 16 19 Si 0.93 43.19 29.54 68.60 2.03 45.22 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.51 6.64 -2.39 -0.02 1.49 16 29 H 0.07 3.29 5.29 -2.39 -0.01 3.27 16 30 H 0.06 2.71 5.83 -2.39 -0.01 2.70 16 31 H 0.06 2.04 8.09 -2.38 -0.02 2.02 16 32 H 0.07 2.17 7.97 -2.39 -0.02 2.15 16 33 H 0.02 0.68 5.69 -2.39 -0.01 0.67 16 34 H 0.07 1.49 8.01 -2.39 -0.02 1.47 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 4.13 4.05 -2.38 -0.01 4.12 16 38 H 0.02 0.63 7.45 -2.39 -0.02 0.61 16 39 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 40 H 0.03 1.01 7.57 -2.39 -0.02 0.99 16 41 H 0.08 2.31 7.71 -2.39 -0.02 2.29 16 42 H 0.33 11.84 8.85 -89.70 -0.79 11.04 16 43 H -0.03 -1.28 8.07 -2.38 -0.02 -1.30 16 44 H 0.06 2.99 6.31 -2.38 -0.02 2.98 16 45 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -57.12 318.15 0.94 -56.18 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.17 Total: 28.78 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.42 Total: -22.21 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -5.67 Total: -107.97 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -57.12 0.94 -56.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221774413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.345 kcal (2) G-P(sol) polarization free energy of solvation -57.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds