Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47695 * 2 1 4 4 N 1.46904 * 109.46967 * 120.00490 * 2 1 3 5 5 C 1.46903 * 110.99613 * 298.94974 * 4 2 1 6 6 C 1.46899 * 111.00155 * 174.99699 * 4 2 1 7 7 C 1.52991 * 109.47063 * 189.99418 * 6 4 2 8 8 C 1.53004 * 109.47107 * 179.97438 * 7 6 4 9 9 N 1.46902 * 109.47125 * 184.85919 * 8 7 6 10 10 C 1.46901 * 110.99927 * 184.29952 * 9 8 7 11 11 C 1.52995 * 109.47336 * 185.66354 * 10 9 8 12 12 C 1.50695 * 115.55145 * 304.98740 * 11 10 9 13 13 H 1.08008 * 119.99747 * 274.71523 * 12 11 10 14 14 C 1.37879 * 120.00453 * 94.43560 * 12 11 10 15 15 N 1.31509 * 120.00172 * 180.29457 * 14 12 11 16 16 Si 1.86800 * 119.99804 * 0.29435 * 14 12 11 17 17 H 1.48497 * 109.47205 * 94.25437 * 16 14 12 18 18 H 1.48496 * 109.47468 * 214.26027 * 16 14 12 19 19 H 1.48505 * 109.47075 * 334.25599 * 16 14 12 20 20 C 1.53008 * 117.49752 * 90.65245 * 11 10 9 21 21 C 1.53000 * 117.50141 * 159.31389 * 11 10 9 22 22 H 1.09002 * 109.47226 * 300.00311 * 1 2 3 23 23 H 1.09004 * 109.47202 * 59.99677 * 1 2 3 24 24 H 1.08998 * 109.47713 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46921 * 240.00027 * 2 1 3 26 26 H 1.08994 * 109.47442 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47060 * 300.00410 * 3 2 1 28 28 H 1.09002 * 109.47038 * 59.99574 * 3 2 1 29 29 H 1.09001 * 109.47091 * 296.04946 * 5 4 2 30 30 H 1.09002 * 109.47092 * 56.04912 * 5 4 2 31 31 H 1.08996 * 109.46799 * 176.04550 * 5 4 2 32 32 H 1.09002 * 109.46836 * 69.99499 * 6 4 2 33 33 H 1.08997 * 109.47346 * 310.00161 * 6 4 2 34 34 H 1.09002 * 109.47229 * 60.00321 * 7 6 4 35 35 H 1.08995 * 109.47440 * 299.99808 * 7 6 4 36 36 H 1.08997 * 109.47272 * 64.85717 * 8 7 6 37 37 H 1.09002 * 109.46883 * 304.85932 * 8 7 6 38 38 H 1.00897 * 110.99617 * 308.24947 * 9 8 7 39 39 H 1.08997 * 109.47366 * 65.65796 * 10 9 8 40 40 H 1.09001 * 109.46829 * 305.66346 * 10 9 8 41 41 H 0.97005 * 120.00308 * 180.02562 * 15 14 12 42 42 H 1.09000 * 117.49507 * 215.00248 * 20 11 10 43 43 H 1.08997 * 117.50070 * 0.02750 * 20 11 10 44 44 H 1.09007 * 117.49514 * 359.97438 * 21 11 10 45 45 H 1.09000 * 117.50152 * 144.97761 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5691 -0.0122 2.4209 6 6 3.4831 -0.8167 1.1751 7 6 3.9345 -1.7507 2.2996 8 6 5.4588 -1.8805 2.2740 9 7 5.8833 -2.8660 3.2772 10 6 7.3484 -2.9430 3.3524 11 6 7.7517 -4.0739 4.3007 12 6 7.1647 -4.0004 5.6867 13 1 7.6514 -3.4093 6.4485 14 6 6.0034 -4.6830 5.9807 15 7 5.4881 -4.6141 7.1887 16 14 5.1620 -5.7056 4.6633 17 1 5.6162 -7.1157 4.7659 18 1 3.6906 -5.6443 4.8535 19 1 5.5105 -5.1696 3.3229 20 6 7.9604 -5.4633 3.6947 21 6 9.1653 -4.6424 4.1614 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.0052 0.9859 2.4627 30 1 0.4820 0.0663 2.4132 31 1 1.8859 -0.5839 3.2931 32 1 3.9334 0.1659 1.3162 33 1 3.7972 -1.2257 0.2149 34 1 3.4842 -2.7333 2.1586 35 1 3.6205 -1.3416 3.2599 36 1 5.9096 -0.9142 2.5003 37 1 5.7789 -2.2079 1.2848 38 1 5.4854 -2.6567 4.1805 39 1 7.7433 -1.9980 3.7252 40 1 7.7533 -3.1395 2.3596 41 1 4.6713 -5.0946 7.3957 42 1 7.6733 -6.3240 4.2987 43 1 7.8109 -5.5715 2.6205 44 1 9.8079 -4.2109 3.3938 45 1 9.6709 -4.9629 5.0723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226395364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = 26.602245 kcal Electronic energy + Delta-G solvation = -19479.142242 eV Core-core repulsion = 16725.370019 eV Total energy + Delta-G solvation = -2753.772223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.83384 -37.37015 -35.19211 -32.61798 -31.96943 -29.97751 -27.70572 -26.78776 -25.73891 -24.69520 -22.60276 -21.47622 -20.90387 -19.68692 -18.72551 -16.40692 -16.11896 -15.72162 -15.07495 -14.87822 -14.63219 -14.13084 -13.98828 -13.59983 -13.34088 -13.29941 -12.50069 -12.39194 -12.34830 -12.15458 -11.92523 -11.70346 -11.53917 -11.36119 -11.16999 -10.99399 -10.94283 -10.75929 -10.45486 -10.36156 -10.18352 -9.81665 -9.34848 -8.92002 -8.50313 -8.37684 -8.34185 -7.36282 -5.99098 -4.06045 3.51799 3.63747 3.80159 3.93117 4.64214 4.68827 4.77340 4.85691 4.99540 5.11760 5.15947 5.23958 5.33129 5.38294 5.41601 5.49704 5.52261 5.60742 5.66678 5.71316 5.74416 5.79802 5.88462 5.92675 6.00965 6.03553 6.08289 6.17386 6.26577 6.41241 6.46852 6.51864 6.59259 6.63308 6.83153 7.02150 7.05924 7.14599 7.21654 7.84623 7.94552 8.24961 8.58507 9.00115 9.65012 11.10632 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.004620 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.599008 B = 6059.569364 C = 6512.989338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.188 4.188 4 N -0.535 5.535 5 C 0.014 3.986 6 C 0.059 3.941 7 C -0.117 4.117 8 C 0.061 3.939 9 N -0.677 5.677 10 C 0.103 3.897 11 C 0.009 3.991 12 C -0.497 4.497 13 H 0.071 0.929 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.873 3.127 17 H -0.299 1.299 18 H -0.305 1.305 19 H -0.207 1.207 20 C -0.194 4.194 21 C -0.188 4.188 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.354 0.646 39 H 0.021 0.979 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 10.065 -14.571 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.246 4.246 4 N -0.259 5.259 5 C -0.133 4.133 6 C -0.069 4.069 7 C -0.155 4.155 8 C -0.069 4.069 9 N -0.310 5.310 10 C -0.026 4.026 11 C 0.008 3.992 12 C -0.534 4.534 13 H 0.089 0.911 14 C -0.121 4.121 15 N -0.540 5.540 16 Si 0.701 3.299 17 H -0.227 1.227 18 H -0.233 1.233 19 H -0.128 1.128 20 C -0.231 4.231 21 C -0.226 4.226 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.175 0.825 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.198 9.022 -14.888 18.838 hybrid contribution 0.081 1.010 0.039 1.014 sum -7.117 10.032 -14.850 19.282 Atomic orbital electron populations 1.21873 0.94438 1.02478 1.01484 1.21717 0.95728 0.92298 0.93693 1.22489 1.01580 0.98346 1.02230 1.62225 1.11158 1.50538 1.01953 1.22519 1.00829 0.96890 0.93110 1.22089 0.86708 0.98267 0.99879 1.21595 0.95476 1.00599 0.97867 1.21865 0.94317 0.93523 0.97245 1.60576 1.09631 1.48627 1.12148 1.21444 0.87132 0.97226 0.96821 1.19374 0.94166 0.90018 0.95617 1.20252 1.08920 1.31386 0.92815 0.91065 1.25017 0.96296 0.95588 0.95238 1.69932 1.21073 1.42769 1.20253 0.86992 0.76985 0.79005 0.86921 1.22660 1.23251 1.12841 1.22865 1.04174 0.97343 0.98678 1.22898 0.91802 1.06485 1.01457 0.92525 0.92483 0.91783 0.90134 0.92496 0.92258 0.92317 0.95482 0.91332 0.90821 0.94913 0.90982 0.90278 0.92027 0.96434 0.91993 0.82522 0.96131 0.93604 0.92790 0.89999 0.90867 0.91319 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.00 37.16 0.33 -0.90 16 2 C 0.07 0.72 2.95 -67.72 -0.20 0.52 16 3 C -0.19 -1.63 8.50 37.15 0.32 -1.32 16 4 N -0.54 -6.30 4.75 -234.89 -1.12 -7.41 16 5 C 0.01 0.16 8.51 60.07 0.51 0.67 16 6 C 0.06 0.71 4.40 -3.83 -0.02 0.70 16 7 C -0.12 -1.72 5.35 -26.73 -0.14 -1.86 16 8 C 0.06 0.97 5.69 -3.82 -0.02 0.94 16 9 N -0.68 -13.54 3.86 -113.78 -0.44 -13.98 16 10 C 0.10 2.11 5.61 -3.83 -0.02 2.09 16 11 C 0.01 0.22 1.37 -155.66 -0.21 0.01 16 12 C -0.50 -13.78 8.73 -34.44 -0.30 -14.08 16 13 H 0.07 2.18 8.06 -52.48 -0.42 1.75 16 14 C 0.08 2.32 5.13 -17.82 -0.09 2.23 16 15 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 16 Si 0.87 22.16 23.18 -169.99 -3.94 18.21 16 17 H -0.30 -7.75 7.08 56.52 0.40 -7.35 16 18 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 19 H -0.21 -4.94 5.17 56.52 0.29 -4.65 16 20 C -0.19 -4.27 7.06 -26.69 -0.19 -4.46 16 21 C -0.19 -3.93 9.96 -26.69 -0.27 -4.20 16 22 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.77 8.03 -51.92 -0.42 0.36 16 26 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 6.47 -51.93 -0.34 0.19 16 29 H 0.03 0.28 6.51 -51.93 -0.34 -0.05 16 30 H 0.07 0.68 6.13 -51.93 -0.32 0.37 16 31 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.03 0.39 6.94 -51.93 -0.36 0.03 16 33 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 36 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.35 7.79 7.24 -39.29 -0.28 7.51 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 1.94 6.31 -51.93 -0.33 1.61 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -29.66 334.98 -8.44 -38.11 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.47 Total: 6.48 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -0.30 Total: -19.66 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.78 Total: -48.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -3.94 Total: 18.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.66 -8.44 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226395364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.712 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds