Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47695 * 2 1 4 4 N 1.46904 * 109.46967 * 120.00490 * 2 1 3 5 5 C 1.46903 * 110.99613 * 298.94974 * 4 2 1 6 6 C 1.46899 * 111.00155 * 174.99699 * 4 2 1 7 7 C 1.52991 * 109.47063 * 189.99418 * 6 4 2 8 8 C 1.53004 * 109.47107 * 179.97438 * 7 6 4 9 9 N 1.46902 * 109.47125 * 184.85919 * 8 7 6 10 10 C 1.46901 * 110.99927 * 184.29952 * 9 8 7 11 11 C 1.52995 * 109.47336 * 185.66354 * 10 9 8 12 12 C 1.50695 * 115.55145 * 304.98740 * 11 10 9 13 13 H 1.08008 * 119.99747 * 274.71523 * 12 11 10 14 14 C 1.37879 * 120.00453 * 94.43560 * 12 11 10 15 15 N 1.31509 * 120.00172 * 180.29457 * 14 12 11 16 16 Si 1.86800 * 119.99804 * 0.29435 * 14 12 11 17 17 H 1.48497 * 109.47205 * 94.25437 * 16 14 12 18 18 H 1.48496 * 109.47468 * 214.26027 * 16 14 12 19 19 H 1.48505 * 109.47075 * 334.25599 * 16 14 12 20 20 C 1.53008 * 117.49752 * 90.65245 * 11 10 9 21 21 C 1.53000 * 117.50141 * 159.31389 * 11 10 9 22 22 H 1.09002 * 109.47226 * 300.00311 * 1 2 3 23 23 H 1.09004 * 109.47202 * 59.99677 * 1 2 3 24 24 H 1.08998 * 109.47713 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46921 * 240.00027 * 2 1 3 26 26 H 1.08994 * 109.47442 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47060 * 300.00410 * 3 2 1 28 28 H 1.09002 * 109.47038 * 59.99574 * 3 2 1 29 29 H 1.09001 * 109.47091 * 296.04946 * 5 4 2 30 30 H 1.09002 * 109.47092 * 56.04912 * 5 4 2 31 31 H 1.08996 * 109.46799 * 176.04550 * 5 4 2 32 32 H 1.09002 * 109.46836 * 69.99499 * 6 4 2 33 33 H 1.08997 * 109.47346 * 310.00161 * 6 4 2 34 34 H 1.09002 * 109.47229 * 60.00321 * 7 6 4 35 35 H 1.08995 * 109.47440 * 299.99808 * 7 6 4 36 36 H 1.08997 * 109.47272 * 64.85717 * 8 7 6 37 37 H 1.09002 * 109.46883 * 304.85932 * 8 7 6 38 38 H 1.00897 * 110.99617 * 308.24947 * 9 8 7 39 39 H 1.08997 * 109.47366 * 65.65796 * 10 9 8 40 40 H 1.09001 * 109.46829 * 305.66346 * 10 9 8 41 41 H 0.97005 * 120.00308 * 180.02562 * 15 14 12 42 42 H 1.09000 * 117.49507 * 215.00248 * 20 11 10 43 43 H 1.08997 * 117.50070 * 0.02750 * 20 11 10 44 44 H 1.09007 * 117.49514 * 359.97438 * 21 11 10 45 45 H 1.09000 * 117.50152 * 144.97761 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5691 -0.0122 2.4209 6 6 3.4831 -0.8167 1.1751 7 6 3.9345 -1.7507 2.2996 8 6 5.4588 -1.8805 2.2740 9 7 5.8833 -2.8660 3.2772 10 6 7.3484 -2.9430 3.3524 11 6 7.7517 -4.0739 4.3007 12 6 7.1647 -4.0004 5.6867 13 1 7.6514 -3.4093 6.4485 14 6 6.0034 -4.6830 5.9807 15 7 5.4881 -4.6141 7.1887 16 14 5.1620 -5.7056 4.6633 17 1 5.6162 -7.1157 4.7659 18 1 3.6906 -5.6443 4.8535 19 1 5.5105 -5.1696 3.3229 20 6 7.9604 -5.4633 3.6947 21 6 9.1653 -4.6424 4.1614 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.0052 0.9859 2.4627 30 1 0.4820 0.0663 2.4132 31 1 1.8859 -0.5839 3.2931 32 1 3.9334 0.1659 1.3162 33 1 3.7972 -1.2257 0.2149 34 1 3.4842 -2.7333 2.1586 35 1 3.6205 -1.3416 3.2599 36 1 5.9096 -0.9142 2.5003 37 1 5.7789 -2.2079 1.2848 38 1 5.4854 -2.6567 4.1805 39 1 7.7433 -1.9980 3.7252 40 1 7.7533 -3.1395 2.3596 41 1 4.6713 -5.0946 7.3957 42 1 7.6733 -6.3240 4.2987 43 1 7.8109 -5.5715 2.6205 44 1 9.8079 -4.2109 3.3938 45 1 9.6709 -4.9629 5.0723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226395364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = 6.999802 kcal Electronic energy + Delta-G solvation = -19479.992267 eV Core-core repulsion = 16725.370019 eV Total energy + Delta-G solvation = -2754.622248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72523 -39.04331 -36.56081 -34.17122 -33.67263 -31.04490 -28.55475 -27.91655 -27.42795 -26.15855 -23.89035 -23.14047 -22.06177 -20.63796 -20.47522 -18.24254 -17.22722 -16.88961 -16.71335 -16.06553 -15.89830 -15.63241 -15.16333 -14.88853 -14.63358 -14.52862 -14.04938 -13.86011 -13.58867 -13.18732 -13.01946 -12.91010 -12.70497 -12.63619 -12.43818 -12.20728 -12.11253 -11.99529 -11.98402 -11.66830 -11.59785 -11.44969 -11.29311 -10.87733 -10.55171 -10.20398 -9.20659 -8.93973 -8.23048 -6.31945 1.46034 1.55827 1.88195 2.55616 2.89944 3.14469 3.21828 3.66852 3.93107 4.01432 4.12893 4.19126 4.29698 4.33452 4.42354 4.45102 4.49029 4.53966 4.60546 4.66131 4.72041 4.75383 4.78848 4.83768 4.88724 4.90270 4.92580 4.96207 5.02937 5.09042 5.13850 5.27277 5.30605 5.33706 5.40161 5.43925 5.53182 5.80596 6.13706 6.22310 6.32551 6.43684 6.58781 6.79661 7.42123 8.90530 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.004620 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.599008 B = 6059.569364 C = 6512.989338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 C -0.182 4.182 4 N -0.551 5.551 5 C 0.017 3.983 6 C 0.067 3.933 7 C -0.110 4.110 8 C 0.064 3.936 9 N -0.692 5.692 10 C 0.111 3.889 11 C -0.018 4.018 12 C -0.491 4.491 13 H 0.026 0.974 14 C 0.035 3.965 15 N -0.953 5.953 16 Si 0.933 3.067 17 H -0.305 1.305 18 H -0.318 1.318 19 H -0.178 1.178 20 C -0.191 4.191 21 C -0.171 4.171 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.337 0.663 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.262 0.738 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 10.661 -17.869 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.241 4.241 4 N -0.274 5.274 5 C -0.131 4.131 6 C -0.061 4.061 7 C -0.148 4.148 8 C -0.065 4.065 9 N -0.323 5.323 10 C -0.018 4.018 11 C -0.019 4.019 12 C -0.528 4.528 13 H 0.044 0.956 14 C -0.163 4.163 15 N -0.592 5.592 16 Si 0.760 3.240 17 H -0.234 1.234 18 H -0.247 1.247 19 H -0.099 1.099 20 C -0.228 4.228 21 C -0.208 4.208 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.036 0.964 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.929 9.634 -18.219 21.743 hybrid contribution 0.060 0.876 1.130 1.431 sum -6.868 10.510 -17.089 21.206 Atomic orbital electron populations 1.21851 0.93634 1.02154 1.02317 1.21800 0.96380 0.92719 0.92716 1.22431 1.01213 0.97681 1.02784 1.62209 1.10870 1.51511 1.02854 1.22481 1.01476 0.96755 0.92430 1.21963 0.87208 0.97847 0.99065 1.21501 0.94743 1.00153 0.98431 1.21922 0.94875 0.93062 0.96652 1.60585 1.09385 1.50475 1.11872 1.21346 0.87496 0.95743 0.97236 1.19382 0.96360 0.92202 0.93970 1.20434 1.08354 1.29593 0.94445 0.95564 1.25717 0.97021 0.96809 0.96708 1.70063 1.21940 1.44725 1.22514 0.86111 0.74938 0.76985 0.85948 1.23364 1.24651 1.09883 1.22877 1.04561 0.95525 0.99800 1.22945 0.91125 1.04822 1.01955 0.92555 0.90803 0.92669 0.89881 0.92954 0.90821 0.92643 0.94941 0.90365 0.92533 0.94310 0.90048 0.92152 0.93246 0.95538 0.90309 0.84443 0.96384 0.90747 0.92972 0.92046 0.88086 0.87487 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.00 71.98 0.65 -1.49 16 2 C 0.07 1.24 2.95 44.91 0.13 1.37 16 3 C -0.18 -2.74 8.50 71.98 0.61 -2.12 16 4 N -0.55 -12.11 4.75 -897.06 -4.26 -16.37 16 5 C 0.02 0.35 8.51 127.69 1.09 1.44 16 6 C 0.07 1.51 4.40 86.30 0.38 1.89 16 7 C -0.11 -3.09 5.35 30.59 0.16 -2.93 16 8 C 0.06 1.89 5.69 86.30 0.49 2.38 16 9 N -0.69 -26.40 3.86 -513.89 -1.99 -28.38 16 10 C 0.11 4.23 5.61 86.30 0.48 4.72 16 11 C -0.02 -0.81 1.37 -52.93 -0.07 -0.88 16 12 C -0.49 -27.76 8.73 25.60 0.22 -27.54 16 13 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 14 C 0.04 2.05 5.13 84.66 0.43 2.48 16 15 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 16 Si 0.93 46.42 23.18 68.60 1.59 48.01 16 17 H -0.31 -15.40 7.08 99.48 0.70 -14.70 16 18 H -0.32 -16.37 7.11 99.48 0.71 -15.66 16 19 H -0.18 -7.98 5.17 99.48 0.51 -7.47 16 20 C -0.19 -7.85 7.06 30.62 0.22 -7.63 16 21 C -0.17 -6.64 9.96 30.62 0.30 -6.33 16 22 H 0.06 0.84 6.34 -2.39 -0.02 0.83 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.39 8.03 -2.38 -0.02 1.37 16 26 H 0.05 0.83 6.75 -2.39 -0.02 0.82 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.87 6.47 -2.39 -0.02 0.85 16 29 H 0.03 0.65 6.51 -2.39 -0.02 0.63 16 30 H 0.08 1.48 6.13 -2.39 -0.01 1.47 16 31 H 0.06 1.38 6.47 -2.39 -0.02 1.37 16 32 H 0.04 0.83 6.94 -2.39 -0.02 0.81 16 33 H 0.08 1.67 8.00 -2.39 -0.02 1.65 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.49 6.55 -2.39 -0.02 1.48 16 36 H 0.03 0.74 8.13 -2.39 -0.02 0.72 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.34 14.78 7.24 -89.70 -0.65 14.13 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 41 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 42 H 0.06 2.79 6.31 -2.39 -0.02 2.77 16 43 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 45 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -64.96 334.98 0.84 -64.12 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.09 Total: 27.32 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 5.10 Total: -34.65 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.95 Total: -104.80 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.59 Total: 48.01 kcal Total: -64.96 0.84 -64.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226395364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.119 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds