Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47295 * 2 1 4 4 C 1.53001 * 109.47470 * 120.00374 * 2 1 3 5 5 N 1.46898 * 109.47474 * 178.77309 * 4 2 1 6 6 C 1.46908 * 110.99668 * 281.84776 * 5 4 2 7 7 C 1.50695 * 109.46987 * 79.42914 * 6 5 4 8 8 H 1.07997 * 120.00313 * 2.07555 * 7 6 5 9 9 C 1.37880 * 119.99628 * 182.07952 * 7 6 5 10 10 N 1.31523 * 119.99649 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00373 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47321 * 270.00137 * 11 9 7 13 13 H 1.48507 * 109.46852 * 30.00162 * 11 9 7 14 14 H 1.48504 * 109.47311 * 149.99892 * 11 9 7 15 15 C 1.46894 * 111.00227 * 157.89464 * 5 4 2 16 16 C 1.53003 * 109.46977 * 283.70757 * 15 5 4 17 17 H 1.08998 * 109.46312 * 302.24445 * 16 15 5 18 18 C 1.53036 * 109.46229 * 182.26736 * 16 15 5 19 19 C 1.53112 * 109.28014 * 180.79438 * 18 16 15 20 20 C 1.53125 * 109.15444 * 57.66948 * 19 18 16 21 21 C 1.53042 * 109.27759 * 302.34410 * 20 19 18 22 22 N 1.46847 * 109.52178 * 59.17561 * 21 20 19 23 23 H 1.09002 * 109.47356 * 299.99475 * 1 2 3 24 24 H 1.09002 * 109.47536 * 59.99643 * 1 2 3 25 25 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46861 * 240.00341 * 2 1 3 27 27 H 1.09002 * 109.46835 * 303.41736 * 3 2 1 28 28 H 1.09000 * 109.46673 * 63.40913 * 3 2 1 29 29 H 1.09000 * 109.47220 * 183.41334 * 3 2 1 30 30 H 1.08998 * 109.47065 * 58.76683 * 4 2 1 31 31 H 1.09010 * 109.46641 * 298.77002 * 4 2 1 32 32 H 1.08995 * 109.46835 * 319.42924 * 6 5 4 33 33 H 1.09001 * 109.46938 * 199.42729 * 6 5 4 34 34 H 0.96995 * 119.99524 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46991 * 43.70517 * 15 5 4 36 36 H 1.08996 * 109.47442 * 163.70588 * 15 5 4 37 37 H 1.08999 * 109.50336 * 300.74554 * 18 16 15 38 38 H 1.08998 * 109.50679 * 60.86129 * 18 16 15 39 39 H 1.08999 * 109.53287 * 297.76325 * 19 18 16 40 40 H 1.09000 * 109.57871 * 177.59692 * 19 18 16 41 41 H 1.08995 * 109.50852 * 182.39819 * 20 19 18 42 42 H 1.09004 * 109.53598 * 62.29970 * 20 19 18 43 43 H 1.09003 * 109.45537 * 299.16309 * 21 20 19 44 44 H 1.08996 * 109.46106 * 179.19063 * 21 20 19 45 45 H 1.00889 * 111.00175 * 62.36061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5087 -0.7471 1.2344 6 6 4.0079 -1.7842 0.3215 7 6 3.9391 -1.2801 -1.0970 8 1 3.5939 -0.2766 -1.2974 9 6 4.3169 -2.1002 -2.1390 10 7 4.2564 -1.6605 -3.3771 11 14 4.9146 -3.8357 -1.7924 12 1 6.3865 -3.8225 -1.5967 13 1 4.2565 -4.3499 -0.5644 14 1 4.5757 -4.7145 -2.9406 15 6 4.0456 -0.9351 2.5887 16 6 3.9400 0.3785 3.3661 17 1 4.4788 1.1610 2.8318 18 6 4.5508 0.1980 4.7577 19 6 4.4252 1.5088 5.5389 20 6 2.9487 1.9070 5.6180 21 6 2.3841 2.0379 4.2015 22 7 2.5274 0.7580 3.4960 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6275 1.9737 -0.8578 28 1 1.7274 1.9383 0.9190 29 1 3.1283 1.4431 -0.0612 30 1 1.6588 -1.7424 1.2602 31 1 1.6948 -0.1949 2.1391 32 1 3.3945 -2.6798 0.4190 33 1 5.0414 -2.0225 0.5727 34 1 4.5225 -2.2373 -4.1101 35 1 3.4737 -1.7081 3.1022 36 1 5.0909 -1.2375 2.5265 37 1 4.0213 -0.5938 5.2876 38 1 5.6033 -0.0687 4.6614 39 1 4.9868 2.2919 5.0295 40 1 4.8202 1.3733 6.5457 41 1 2.8564 2.8614 6.1362 42 1 2.3936 1.1425 6.1617 43 1 2.9302 2.8125 3.6632 44 1 1.3293 2.3073 4.2545 45 1 1.9983 0.0313 3.9541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232598224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -5.140370 kcal Electronic energy + Delta-G solvation = -20586.699982 eV Core-core repulsion = 17831.551296 eV Total energy + Delta-G solvation = -2755.148686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19127 -36.91333 -33.68840 -32.57878 -31.65338 -31.07521 -27.69460 -26.26072 -26.12722 -23.60804 -23.24703 -21.26284 -20.39342 -20.14871 -18.84978 -16.65496 -15.61071 -15.17864 -14.94854 -14.57639 -14.37289 -14.00876 -13.92780 -13.45168 -12.92273 -12.84697 -12.48434 -12.18962 -12.11456 -11.98491 -11.63196 -11.37402 -11.29530 -11.05218 -11.02042 -10.87055 -10.66568 -10.53919 -10.28876 -10.20932 -9.91306 -9.82146 -9.66250 -9.46353 -8.89129 -8.42212 -7.86366 -7.08745 -5.93834 -3.87672 3.33357 3.41149 3.43340 4.35433 4.50871 4.64398 4.78380 4.93715 4.98212 5.30920 5.36500 5.40750 5.46996 5.54575 5.72360 5.78361 5.86899 5.94640 5.94941 5.96733 5.98090 6.06638 6.13154 6.21098 6.25189 6.38490 6.44480 6.55758 6.68010 6.73007 6.84467 6.92043 7.02249 7.07566 7.18136 7.27303 7.48807 7.55252 7.68097 7.82420 8.16704 8.34363 8.82907 9.20546 9.69291 11.18540 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.006517 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.470606 B = 4295.288067 C = 5071.175064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.117 4.117 4 C 0.060 3.940 5 N -0.514 5.514 6 C 0.157 3.843 7 C -0.498 4.498 8 H 0.095 0.905 9 C 0.065 3.935 10 N -0.903 5.903 11 Si 0.868 3.132 12 H -0.279 1.279 13 H -0.270 1.270 14 H -0.288 1.288 15 C 0.061 3.939 16 C 0.096 3.904 17 H 0.089 0.911 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.157 4.157 21 C 0.056 3.944 22 N -0.660 5.660 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.004 0.996 31 H 0.102 0.898 32 H -0.013 1.013 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.018 0.982 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 5.081 16.899 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.175 4.175 4 C -0.069 4.069 5 N -0.237 5.237 6 C 0.031 3.969 7 C -0.536 4.536 8 H 0.113 0.887 9 C -0.135 4.135 10 N -0.542 5.542 11 Si 0.696 3.304 12 H -0.205 1.205 13 H -0.195 1.195 14 H -0.215 1.215 15 C -0.068 4.068 16 C -0.014 4.014 17 H 0.107 0.893 18 C -0.192 4.192 19 C -0.155 4.155 20 C -0.196 4.196 21 C -0.074 4.074 22 N -0.289 5.289 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.119 0.881 32 H 0.005 0.995 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.297 5.761 15.892 17.222 hybrid contribution 0.374 -2.182 1.305 2.569 sum -2.923 3.579 17.196 17.806 Atomic orbital electron populations 1.21799 0.97704 1.00148 1.00160 1.21330 0.92414 0.97258 1.01002 1.21498 1.02197 0.95317 0.98442 1.22527 0.87214 0.97022 1.00091 1.61752 1.08120 1.48937 1.04862 1.20329 0.93900 0.89004 0.93701 1.21277 1.42284 1.02244 0.87817 0.88675 1.24917 0.95776 0.97681 0.95159 1.69896 1.49298 1.36518 0.98532 0.86970 0.79428 0.86046 0.77908 1.20467 1.19495 1.21450 1.22104 0.99526 0.93950 0.91239 1.21649 0.88218 0.98712 0.92827 0.89256 1.22276 1.01902 0.97256 0.97810 1.21523 0.96399 0.97741 0.99798 1.22275 0.96682 1.01332 0.99360 1.22032 1.00682 0.93435 0.91211 1.60879 1.10401 1.04591 1.53002 0.94022 0.93661 0.94003 0.87681 0.95553 0.94179 0.91607 0.97758 0.88081 0.99491 0.96807 0.92925 0.96406 0.91358 0.92432 0.91509 0.91867 0.92568 0.92001 0.92431 0.90898 0.91170 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 37.15 0.34 -2.04 16 2 C -0.10 -2.03 2.44 -90.62 -0.22 -2.25 16 3 C -0.12 -2.25 8.62 37.16 0.32 -1.93 16 4 C 0.06 1.13 4.15 -3.82 -0.02 1.12 16 5 N -0.51 -10.44 3.68 -236.07 -0.87 -11.31 16 6 C 0.16 3.80 3.87 -4.97 -0.02 3.78 16 7 C -0.50 -13.89 7.87 -34.44 -0.27 -14.16 16 8 H 0.10 2.84 5.47 -52.49 -0.29 2.55 16 9 C 0.07 1.88 5.47 -17.81 -0.10 1.79 16 10 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 11 Si 0.87 21.76 27.51 -169.99 -4.68 17.08 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.59 6.48 56.52 0.37 -6.22 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.06 1.01 4.79 -3.83 -0.02 0.99 16 16 C 0.10 1.30 2.67 -67.72 -0.18 1.12 16 17 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.15 -1.69 5.36 -26.65 -0.14 -1.83 16 19 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16 20 C -0.16 -1.44 6.08 -26.65 -0.16 -1.60 16 21 C 0.06 0.59 6.55 -3.83 -0.03 0.56 16 22 N -0.66 -8.24 3.66 -106.76 -0.39 -8.63 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 2.58 5.10 -51.93 -0.26 2.32 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.42 7.13 -51.93 -0.37 1.05 16 30 H 0.00 0.09 7.64 -51.93 -0.40 -0.31 16 31 H 0.10 1.68 4.24 -51.92 -0.22 1.46 16 32 H -0.01 -0.32 6.54 -51.93 -0.34 -0.66 16 33 H 0.01 0.34 7.05 -51.93 -0.37 -0.03 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.02 0.28 7.99 -51.93 -0.41 -0.13 16 36 H 0.07 1.14 7.55 -51.93 -0.39 0.75 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.33 3.92 8.21 -39.30 -0.32 3.60 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -29.15 331.79 -9.28 -38.43 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.46 Total: 2.05 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.65 Total: -15.75 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.49 Total: -46.81 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.68 Total: 17.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.15 -9.28 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232598224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.285 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds