Wall clock time and date at job start Mon Mar 30 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47295 * 2 1 4 4 C 1.53001 * 109.47470 * 120.00374 * 2 1 3 5 5 N 1.46898 * 109.47474 * 178.77309 * 4 2 1 6 6 C 1.46908 * 110.99668 * 281.84776 * 5 4 2 7 7 C 1.50695 * 109.46987 * 79.42914 * 6 5 4 8 8 H 1.07997 * 120.00313 * 2.07555 * 7 6 5 9 9 C 1.37880 * 119.99628 * 182.07952 * 7 6 5 10 10 N 1.31523 * 119.99649 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00373 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47321 * 270.00137 * 11 9 7 13 13 H 1.48507 * 109.46852 * 30.00162 * 11 9 7 14 14 H 1.48504 * 109.47311 * 149.99892 * 11 9 7 15 15 C 1.46894 * 111.00227 * 157.89464 * 5 4 2 16 16 C 1.53003 * 109.46977 * 283.70757 * 15 5 4 17 17 H 1.08998 * 109.46312 * 302.24445 * 16 15 5 18 18 C 1.53036 * 109.46229 * 182.26736 * 16 15 5 19 19 C 1.53112 * 109.28014 * 180.79438 * 18 16 15 20 20 C 1.53125 * 109.15444 * 57.66948 * 19 18 16 21 21 C 1.53042 * 109.27759 * 302.34410 * 20 19 18 22 22 N 1.46847 * 109.52178 * 59.17561 * 21 20 19 23 23 H 1.09002 * 109.47356 * 299.99475 * 1 2 3 24 24 H 1.09002 * 109.47536 * 59.99643 * 1 2 3 25 25 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46861 * 240.00341 * 2 1 3 27 27 H 1.09002 * 109.46835 * 303.41736 * 3 2 1 28 28 H 1.09000 * 109.46673 * 63.40913 * 3 2 1 29 29 H 1.09000 * 109.47220 * 183.41334 * 3 2 1 30 30 H 1.08998 * 109.47065 * 58.76683 * 4 2 1 31 31 H 1.09010 * 109.46641 * 298.77002 * 4 2 1 32 32 H 1.08995 * 109.46835 * 319.42924 * 6 5 4 33 33 H 1.09001 * 109.46938 * 199.42729 * 6 5 4 34 34 H 0.96995 * 119.99524 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46991 * 43.70517 * 15 5 4 36 36 H 1.08996 * 109.47442 * 163.70588 * 15 5 4 37 37 H 1.08999 * 109.50336 * 300.74554 * 18 16 15 38 38 H 1.08998 * 109.50679 * 60.86129 * 18 16 15 39 39 H 1.08999 * 109.53287 * 297.76325 * 19 18 16 40 40 H 1.09000 * 109.57871 * 177.59692 * 19 18 16 41 41 H 1.08995 * 109.50852 * 182.39819 * 20 19 18 42 42 H 1.09004 * 109.53598 * 62.29970 * 20 19 18 43 43 H 1.09003 * 109.45537 * 299.16309 * 21 20 19 44 44 H 1.08996 * 109.46106 * 179.19063 * 21 20 19 45 45 H 1.00889 * 111.00175 * 62.36061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5087 -0.7471 1.2344 6 6 4.0079 -1.7842 0.3215 7 6 3.9391 -1.2801 -1.0970 8 1 3.5939 -0.2766 -1.2974 9 6 4.3169 -2.1002 -2.1390 10 7 4.2564 -1.6605 -3.3771 11 14 4.9146 -3.8357 -1.7924 12 1 6.3865 -3.8225 -1.5967 13 1 4.2565 -4.3499 -0.5644 14 1 4.5757 -4.7145 -2.9406 15 6 4.0456 -0.9351 2.5887 16 6 3.9400 0.3785 3.3661 17 1 4.4788 1.1610 2.8318 18 6 4.5508 0.1980 4.7577 19 6 4.4252 1.5088 5.5389 20 6 2.9487 1.9070 5.6180 21 6 2.3841 2.0379 4.2015 22 7 2.5274 0.7580 3.4960 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6275 1.9737 -0.8578 28 1 1.7274 1.9383 0.9190 29 1 3.1283 1.4431 -0.0612 30 1 1.6588 -1.7424 1.2602 31 1 1.6948 -0.1949 2.1391 32 1 3.3945 -2.6798 0.4190 33 1 5.0414 -2.0225 0.5727 34 1 4.5225 -2.2373 -4.1101 35 1 3.4737 -1.7081 3.1022 36 1 5.0909 -1.2375 2.5265 37 1 4.0213 -0.5938 5.2876 38 1 5.6033 -0.0687 4.6614 39 1 4.9868 2.2919 5.0295 40 1 4.8202 1.3733 6.5457 41 1 2.8564 2.8614 6.1362 42 1 2.3936 1.1425 6.1617 43 1 2.9302 2.8125 3.6632 44 1 1.3293 2.3073 4.2545 45 1 1.9983 0.0313 3.9541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232598224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:44 Heat of formation + Delta-G solvation = -23.119136 kcal Electronic energy + Delta-G solvation = -20587.479599 eV Core-core repulsion = 17831.551296 eV Total energy + Delta-G solvation = -2755.928304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29602 -38.36200 -35.21177 -34.59710 -32.65764 -32.27856 -29.56314 -27.70754 -27.50966 -25.20699 -24.19528 -22.71232 -21.73460 -21.21256 -20.48449 -18.73786 -16.83670 -16.58815 -16.25003 -15.99762 -15.59204 -15.35187 -15.17402 -14.83806 -14.46130 -14.38882 -14.00674 -13.74869 -13.40743 -13.17719 -13.02646 -12.87961 -12.72626 -12.52801 -12.23531 -12.09259 -11.97707 -11.89002 -11.80497 -11.60595 -11.46538 -11.36583 -11.25381 -11.11366 -10.84395 -10.54511 -8.93731 -8.70480 -8.16877 -6.14660 1.33697 1.35352 1.44822 2.39438 3.14398 3.30942 3.41646 3.93815 4.00771 4.13908 4.30641 4.35955 4.38178 4.46052 4.50742 4.59030 4.66402 4.76430 4.82242 4.84618 4.92821 4.97975 5.00798 5.04564 5.10080 5.16010 5.16563 5.21325 5.24826 5.29107 5.32033 5.38923 5.41703 5.50236 5.60930 5.68696 5.84060 6.00957 6.20154 6.32210 6.62562 6.69717 6.88595 6.94669 7.45964 8.98523 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.006517 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.470606 B = 4295.288067 C = 5071.175064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.102 4.102 4 C 0.065 3.935 5 N -0.525 5.525 6 C 0.166 3.834 7 C -0.494 4.494 8 H 0.063 0.937 9 C 0.005 3.995 10 N -0.950 5.950 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.258 1.258 14 H -0.287 1.287 15 C 0.059 3.941 16 C 0.108 3.892 17 H 0.067 0.933 18 C -0.145 4.145 19 C -0.115 4.115 20 C -0.150 4.150 21 C 0.058 3.942 22 N -0.674 5.674 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.033 0.967 30 H -0.009 1.009 31 H 0.133 0.867 32 H -0.021 1.021 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 4.906 19.942 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 C -0.160 4.160 4 C -0.062 4.062 5 N -0.248 5.248 6 C 0.039 3.961 7 C -0.532 4.532 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.760 3.240 12 H -0.194 1.194 13 H -0.182 1.182 14 H -0.213 1.213 15 C -0.070 4.070 16 C -0.002 4.002 17 H 0.085 0.915 18 C -0.185 4.185 19 C -0.153 4.153 20 C -0.189 4.189 21 C -0.071 4.071 22 N -0.303 5.303 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.150 0.850 32 H -0.004 1.004 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.947 5.595 18.970 20.168 hybrid contribution 0.542 -2.016 0.369 2.120 sum -3.405 3.579 19.339 19.960 Atomic orbital electron populations 1.21708 0.95047 1.00721 1.01558 1.21237 0.94720 0.97045 0.99210 1.21329 0.99927 0.95196 0.99504 1.22607 0.86357 0.96480 1.00793 1.61678 1.09055 1.47476 1.06617 1.20099 0.93920 0.89475 0.92629 1.21521 1.40686 1.00989 0.90010 0.91880 1.25737 0.96394 1.02111 0.94874 1.70050 1.51290 1.38271 0.99625 0.85907 0.79282 0.80796 0.78057 1.19440 1.18242 1.21253 1.22217 0.99165 0.96180 0.89410 1.21371 0.89092 0.96119 0.93654 0.91513 1.22178 1.01677 0.98422 0.96182 1.21518 0.96996 0.96651 1.00140 1.22197 0.96004 1.02289 0.98383 1.22032 1.01442 0.91828 0.91772 1.60689 1.09728 1.05722 1.54205 0.91268 0.93568 0.93884 0.93031 0.95698 0.91799 0.94810 0.99067 0.85005 1.00369 0.96620 0.92955 0.95223 0.91797 0.91552 0.91605 0.92490 0.91204 0.90696 0.91665 0.92074 0.89881 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.19 71.98 0.66 -3.67 16 2 C -0.10 -4.17 2.44 -10.79 -0.03 -4.19 16 3 C -0.10 -3.96 8.62 71.98 0.62 -3.34 16 4 C 0.07 2.44 4.15 86.30 0.36 2.80 16 5 N -0.53 -21.35 3.68 -900.79 -3.31 -24.66 16 6 C 0.17 8.12 3.87 85.55 0.33 8.45 16 7 C -0.49 -28.55 7.87 25.60 0.20 -28.34 16 8 H 0.06 3.99 5.47 -2.91 -0.02 3.98 16 9 C 0.00 0.29 5.47 84.65 0.46 0.75 16 10 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 11 Si 0.93 45.51 27.51 68.60 1.89 47.39 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.96 6.48 99.48 0.64 -11.32 16 14 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 15 C 0.06 1.87 4.79 86.31 0.41 2.29 16 16 C 0.11 2.75 2.67 44.94 0.12 2.87 16 17 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 18 C -0.14 -2.83 5.36 30.64 0.16 -2.67 16 19 C -0.12 -1.91 6.00 30.67 0.18 -1.73 16 20 C -0.15 -2.22 6.08 30.65 0.19 -2.03 16 21 C 0.06 1.06 6.55 86.33 0.57 1.63 16 22 N -0.67 -15.13 3.66 -491.67 -1.80 -16.94 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.05 2.66 5.10 -2.39 -0.01 2.65 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.03 1.50 7.13 -2.39 -0.02 1.48 16 30 H -0.01 -0.36 7.64 -2.39 -0.02 -0.38 16 31 H 0.13 4.09 4.24 -2.38 -0.01 4.08 16 32 H -0.02 -1.07 6.54 -2.39 -0.02 -1.09 16 33 H 0.02 0.76 7.05 -2.39 -0.02 0.74 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.03 0.88 7.99 -2.39 -0.02 0.86 16 36 H 0.06 2.07 7.55 -2.39 -0.02 2.05 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.34 6.87 8.21 -89.70 -0.74 6.14 16 Total: -1.00 -65.27 331.79 1.45 -63.82 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.14 Total: 17.67 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 4.24 Total: -27.19 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -4.82 Total: -101.69 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.89 Total: 47.39 kcal Total: -65.27 1.45 -63.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232598224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.697 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds