Wall clock time and date at job start Mon Mar 30 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 N 1.46894 * 109.47138 * 174.86092 * 3 2 1 5 5 C 1.46902 * 111.00108 * 75.64129 * 4 3 2 6 6 C 1.52994 * 109.47112 * 199.69451 * 5 4 3 7 7 C 1.50703 * 109.46926 * 174.86756 * 6 5 4 8 8 H 1.07997 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00188 * 179.72268 * 7 6 5 10 10 N 1.31515 * 119.99474 * 0.28137 * 9 7 6 11 11 Si 1.86794 * 120.00240 * 180.27617 * 9 7 6 12 12 H 1.48498 * 109.47101 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47239 * 120.00334 * 11 9 7 14 14 H 1.48502 * 109.47313 * 240.00207 * 11 9 7 15 15 C 1.46904 * 110.99780 * 199.59175 * 4 3 2 16 16 C 1.52995 * 109.47175 * 66.04882 * 15 4 3 17 17 H 1.08998 * 109.50388 * 304.92379 * 16 15 4 18 18 C 1.53120 * 109.50498 * 184.80040 * 16 15 4 19 19 C 1.53121 * 109.15930 * 182.40183 * 18 16 15 20 20 C 1.53040 * 109.27714 * 57.65751 * 19 18 16 21 21 N 1.46843 * 109.52451 * 300.81979 * 20 19 18 22 22 C 1.46844 * 111.20064 * 61.74111 * 21 20 19 23 23 H 1.09004 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47255 * 300.00262 * 1 2 3 25 25 H 1.09003 * 109.47500 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.46816 * 240.00045 * 2 1 3 27 27 H 1.08999 * 109.46785 * 120.00344 * 2 1 3 28 28 H 1.09003 * 109.46608 * 54.85870 * 3 2 1 29 29 H 1.08998 * 109.46863 * 294.86650 * 3 2 1 30 30 H 1.09003 * 109.46826 * 79.69182 * 5 4 3 31 31 H 1.09001 * 109.46865 * 319.69904 * 5 4 3 32 32 H 1.08998 * 109.47341 * 54.86908 * 6 5 4 33 33 H 1.09004 * 109.46953 * 294.86416 * 6 5 4 34 34 H 0.97003 * 119.99824 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47223 * 186.04816 * 15 4 3 36 36 H 1.08998 * 109.47072 * 306.04629 * 15 4 3 37 37 H 1.08997 * 109.52268 * 302.30858 * 18 16 15 38 38 H 1.09005 * 109.52014 * 62.50091 * 18 16 15 39 39 H 1.08998 * 109.50536 * 297.71608 * 19 18 16 40 40 H 1.09007 * 109.53435 * 177.61462 * 19 18 16 41 41 H 1.08995 * 109.46067 * 180.79907 * 20 19 18 42 42 H 1.08999 * 109.46094 * 60.83280 * 20 19 18 43 43 H 1.00909 * 110.99557 * 297.64333 * 21 20 19 44 44 H 1.08999 * 109.46448 * 178.24374 * 22 21 20 45 45 H 1.09000 * 109.46151 * 58.26942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5037 1.4442 0.1241 5 6 4.1401 1.0652 -1.1446 6 6 5.5739 0.6028 -0.8778 7 6 6.1847 0.0957 -2.1588 8 1 5.6077 0.1021 -3.0717 9 6 7.4818 -0.3718 -2.1663 10 7 8.1841 -0.3802 -1.0545 11 14 8.2414 -0.9931 -3.7557 12 1 7.2508 -0.8781 -4.8559 13 1 9.4402 -0.1799 -4.0825 14 1 8.6375 -2.4150 -3.5923 15 6 3.9911 2.7501 0.5880 16 6 3.5045 2.9977 2.0171 17 1 2.4193 2.9024 2.0537 18 6 3.9099 4.4068 2.4583 19 6 3.4720 4.6246 3.9094 20 6 4.1079 3.5511 4.7955 21 7 3.6890 2.2217 4.3333 22 6 4.1394 1.9714 2.9582 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6035 1.9821 0.8404 29 1 1.7538 1.9290 -0.9324 30 1 4.1542 1.9247 -1.8149 31 1 3.5765 0.2541 -1.6057 32 1 5.5658 -0.1972 -0.1375 33 1 6.1616 1.4402 -0.5016 34 1 9.0968 -0.7086 -1.0598 35 1 5.0809 2.7590 0.5686 36 1 3.6097 3.5337 -0.0667 37 1 4.9920 4.5145 2.3843 38 1 3.4249 5.1429 1.8171 39 1 2.3863 4.5554 3.9762 40 1 3.7951 5.6106 4.2435 41 1 3.7868 3.6948 5.8271 42 1 5.1936 3.6298 4.7389 43 1 2.6893 2.1099 4.4124 44 1 3.8412 0.9677 2.6554 45 1 5.2250 2.0576 2.9102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233037414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:13 Heat of formation + Delta-G solvation = -27.492142 kcal Electronic energy + Delta-G solvation = -19844.340465 eV Core-core repulsion = 17088.222534 eV Total energy + Delta-G solvation = -2756.117931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.19067 -37.18172 -33.55959 -33.02635 -31.79266 -31.08564 -29.17296 -26.19571 -25.15680 -23.43657 -23.08559 -21.35907 -21.14072 -20.05394 -19.43565 -16.37110 -15.84452 -15.39662 -15.09485 -14.74522 -14.57640 -14.37935 -14.07013 -13.95450 -13.08449 -12.78515 -12.60873 -12.45360 -12.15577 -12.02886 -11.81801 -11.71412 -11.33887 -11.18869 -11.14422 -10.95502 -10.88517 -10.67996 -10.59932 -10.50794 -10.17085 -10.09494 -9.68811 -9.33145 -9.05716 -8.30320 -8.22619 -7.64333 -5.96378 -3.98504 3.32692 3.40202 3.43952 4.32625 4.44037 4.53010 4.77658 4.94837 5.05781 5.11912 5.19411 5.31352 5.38962 5.39958 5.55624 5.59291 5.63040 5.68365 5.73406 5.79773 5.86831 5.95969 5.97620 6.04991 6.08036 6.14061 6.17418 6.20567 6.33056 6.38640 6.48954 6.53258 6.60428 6.66843 7.05548 7.17537 7.49935 7.57094 7.61558 7.84323 7.96789 8.14230 8.47609 9.09296 9.65021 11.14911 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.005470 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.512733 B = 5117.898849 C = 6194.005861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.053 3.947 4 N -0.535 5.535 5 C 0.062 3.938 6 C 0.032 3.968 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.064 3.936 16 C -0.117 4.117 17 H 0.065 0.935 18 C -0.116 4.116 19 C -0.155 4.155 20 C 0.055 3.945 21 N -0.688 5.688 22 C 0.070 3.930 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.335 0.665 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 7.811 8.292 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.258 5.258 5 C -0.064 4.064 6 C -0.006 4.006 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.065 4.065 16 C -0.138 4.138 17 H 0.083 0.917 18 C -0.154 4.154 19 C -0.194 4.194 20 C -0.075 4.075 21 N -0.315 5.315 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.151 0.849 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.996 7.072 9.007 16.585 hybrid contribution -0.325 0.976 -2.117 2.354 sum -12.321 8.047 6.890 16.249 Atomic orbital electron populations 1.21737 0.96459 1.01295 1.01129 1.21502 0.94267 0.96924 1.03068 1.22155 0.89375 0.96752 0.99287 1.62104 1.04049 1.27795 1.31875 1.22379 0.98770 0.97979 0.87317 1.19038 0.88104 0.96573 0.96837 1.21245 0.97942 1.41608 0.95190 0.92901 1.24981 0.97266 0.95936 0.96071 1.69986 1.09901 1.47074 1.26179 0.86578 0.79204 0.78552 0.83907 1.19830 1.21090 1.20992 1.22064 1.01283 0.89577 0.93530 1.21904 1.00170 0.95406 0.96299 0.91660 1.21601 1.01573 0.96692 0.95569 1.22243 1.00513 1.00150 0.96487 1.22017 1.00584 0.87249 0.97608 1.60713 1.18873 1.28082 1.23796 1.22018 1.00195 0.99180 0.84523 0.92849 0.93166 0.93267 0.91794 0.91155 0.91740 0.95781 0.96441 0.92044 0.95602 0.96869 0.93108 0.89889 0.95969 0.91605 0.92444 0.92428 0.91852 0.91332 0.90963 0.84868 0.89144 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.67 5.98 -26.73 -0.16 -1.83 16 3 C 0.05 0.77 4.83 -3.83 -0.02 0.75 16 4 N -0.53 -9.36 3.84 -234.64 -0.90 -10.26 16 5 C 0.06 1.31 4.75 -3.83 -0.02 1.29 16 6 C 0.03 0.83 5.01 -27.88 -0.14 0.69 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 15 C 0.06 1.04 4.18 -3.82 -0.02 1.02 16 16 C -0.12 -1.56 2.28 -90.54 -0.21 -1.76 16 17 H 0.07 0.84 6.09 -51.93 -0.32 0.52 16 18 C -0.12 -1.37 5.29 -26.61 -0.14 -1.51 16 19 C -0.15 -1.56 6.08 -26.65 -0.16 -1.72 16 20 C 0.06 0.60 6.55 -3.83 -0.03 0.57 16 21 N -0.69 -8.56 6.87 -113.82 -0.78 -9.34 16 22 C 0.07 1.01 5.71 -3.83 -0.02 0.99 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.98 6.89 -51.93 -0.36 0.62 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.86 5.82 -51.93 -0.30 0.56 16 29 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 30 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 31 H 0.06 1.29 6.55 -51.93 -0.34 0.95 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.36 6.96 -51.93 -0.36 0.00 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.54 6.72 -51.93 -0.35 1.19 16 36 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.33 3.70 8.86 -39.29 -0.35 3.35 16 44 H 0.09 1.46 7.78 -51.93 -0.40 1.06 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -29.24 343.51 -10.39 -39.62 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.64 Total: 0.60 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.95 Total: -16.32 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.95 Total: -45.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.24 -10.39 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233037414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.130 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds