Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 N 1.46894 * 109.47138 * 174.86092 * 3 2 1 5 5 C 1.46902 * 111.00108 * 75.64129 * 4 3 2 6 6 C 1.52994 * 109.47112 * 199.69451 * 5 4 3 7 7 C 1.50703 * 109.46926 * 174.86756 * 6 5 4 8 8 H 1.07997 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00188 * 179.72268 * 7 6 5 10 10 N 1.31515 * 119.99474 * 0.28137 * 9 7 6 11 11 Si 1.86794 * 120.00240 * 180.27617 * 9 7 6 12 12 H 1.48498 * 109.47101 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47239 * 120.00334 * 11 9 7 14 14 H 1.48502 * 109.47313 * 240.00207 * 11 9 7 15 15 C 1.46904 * 110.99780 * 199.59175 * 4 3 2 16 16 C 1.52995 * 109.47175 * 66.04882 * 15 4 3 17 17 H 1.08998 * 109.50388 * 304.92379 * 16 15 4 18 18 C 1.53120 * 109.50498 * 184.80040 * 16 15 4 19 19 C 1.53121 * 109.15930 * 182.40183 * 18 16 15 20 20 C 1.53040 * 109.27714 * 57.65751 * 19 18 16 21 21 N 1.46843 * 109.52451 * 300.81979 * 20 19 18 22 22 C 1.46844 * 111.20064 * 61.74111 * 21 20 19 23 23 H 1.09004 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47255 * 300.00262 * 1 2 3 25 25 H 1.09003 * 109.47500 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.46816 * 240.00045 * 2 1 3 27 27 H 1.08999 * 109.46785 * 120.00344 * 2 1 3 28 28 H 1.09003 * 109.46608 * 54.85870 * 3 2 1 29 29 H 1.08998 * 109.46863 * 294.86650 * 3 2 1 30 30 H 1.09003 * 109.46826 * 79.69182 * 5 4 3 31 31 H 1.09001 * 109.46865 * 319.69904 * 5 4 3 32 32 H 1.08998 * 109.47341 * 54.86908 * 6 5 4 33 33 H 1.09004 * 109.46953 * 294.86416 * 6 5 4 34 34 H 0.97003 * 119.99824 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47223 * 186.04816 * 15 4 3 36 36 H 1.08998 * 109.47072 * 306.04629 * 15 4 3 37 37 H 1.08997 * 109.52268 * 302.30858 * 18 16 15 38 38 H 1.09005 * 109.52014 * 62.50091 * 18 16 15 39 39 H 1.08998 * 109.50536 * 297.71608 * 19 18 16 40 40 H 1.09007 * 109.53435 * 177.61462 * 19 18 16 41 41 H 1.08995 * 109.46067 * 180.79907 * 20 19 18 42 42 H 1.08999 * 109.46094 * 60.83280 * 20 19 18 43 43 H 1.00909 * 110.99557 * 297.64333 * 21 20 19 44 44 H 1.08999 * 109.46448 * 178.24374 * 22 21 20 45 45 H 1.09000 * 109.46151 * 58.26942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5037 1.4442 0.1241 5 6 4.1401 1.0652 -1.1446 6 6 5.5739 0.6028 -0.8778 7 6 6.1847 0.0957 -2.1588 8 1 5.6077 0.1021 -3.0717 9 6 7.4818 -0.3718 -2.1663 10 7 8.1841 -0.3802 -1.0545 11 14 8.2414 -0.9931 -3.7557 12 1 7.2508 -0.8781 -4.8559 13 1 9.4402 -0.1799 -4.0825 14 1 8.6375 -2.4150 -3.5923 15 6 3.9911 2.7501 0.5880 16 6 3.5045 2.9977 2.0171 17 1 2.4193 2.9024 2.0537 18 6 3.9099 4.4068 2.4583 19 6 3.4720 4.6246 3.9094 20 6 4.1079 3.5511 4.7955 21 7 3.6890 2.2217 4.3333 22 6 4.1394 1.9714 2.9582 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6035 1.9821 0.8404 29 1 1.7538 1.9290 -0.9324 30 1 4.1542 1.9247 -1.8149 31 1 3.5765 0.2541 -1.6057 32 1 5.5658 -0.1972 -0.1375 33 1 6.1616 1.4402 -0.5016 34 1 9.0968 -0.7086 -1.0598 35 1 5.0809 2.7590 0.5686 36 1 3.6097 3.5337 -0.0667 37 1 4.9920 4.5145 2.3843 38 1 3.4249 5.1429 1.8171 39 1 2.3863 4.5554 3.9762 40 1 3.7951 5.6106 4.2435 41 1 3.7868 3.6948 5.8271 42 1 5.1936 3.6298 4.7389 43 1 2.6893 2.1099 4.4124 44 1 3.8412 0.9677 2.6554 45 1 5.2250 2.0576 2.9102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233037414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = -46.006832 kcal Electronic energy + Delta-G solvation = -19845.143322 eV Core-core repulsion = 17088.222534 eV Total energy + Delta-G solvation = -2756.920789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35151 -38.47648 -35.39767 -34.37883 -33.14608 -32.24271 -30.86623 -27.35128 -26.96417 -24.55718 -24.49534 -22.75499 -22.36119 -21.32737 -20.77524 -18.54270 -16.89839 -16.72262 -16.56567 -16.26515 -15.91088 -15.56273 -15.36964 -15.16039 -14.41343 -14.29001 -14.02479 -13.73142 -13.57281 -13.17075 -13.08990 -13.01258 -12.89917 -12.75897 -12.48615 -12.35684 -12.16432 -12.05306 -11.86716 -11.79593 -11.59799 -11.35797 -11.31449 -11.15212 -11.01787 -10.53996 -9.29583 -9.03236 -8.19507 -6.30900 1.39156 1.39631 1.52836 2.39943 3.03099 3.13773 3.43574 3.73931 3.95642 4.00358 4.04964 4.12139 4.23901 4.32855 4.42729 4.47439 4.57204 4.59955 4.64155 4.66505 4.70727 4.78233 4.86047 4.87632 4.97645 5.04522 5.06914 5.13028 5.15551 5.18354 5.24922 5.31401 5.33289 5.44647 5.47802 5.52150 5.68109 5.81244 6.12747 6.15588 6.35864 6.38468 6.59404 6.86926 7.38245 8.92712 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.005470 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.512733 B = 5117.898849 C = 6194.005861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.544 5.544 5 C 0.080 3.920 6 C 0.044 3.956 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.965 3.035 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.067 3.933 16 C -0.103 4.103 17 H 0.082 0.918 18 C -0.116 4.116 19 C -0.145 4.145 20 C 0.053 3.947 21 N -0.693 5.693 22 C 0.080 3.920 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.016 0.984 31 H 0.062 0.938 32 H -0.008 1.008 33 H -0.014 1.014 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.347 0.653 44 H 0.068 0.932 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 8.655 8.183 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.048 4.048 6 C 0.006 3.994 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.789 3.211 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.062 4.062 16 C -0.124 4.124 17 H 0.100 0.900 18 C -0.154 4.154 19 C -0.184 4.184 20 C -0.076 4.076 21 N -0.321 5.321 22 C -0.050 4.050 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.004 0.996 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.087 0.913 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.977 7.926 8.908 18.372 hybrid contribution 0.298 0.715 -2.018 2.161 sum -13.679 8.640 6.890 17.585 Atomic orbital electron populations 1.21674 0.93748 1.02223 1.02187 1.21484 0.96578 0.96007 1.01562 1.22238 0.86974 0.97634 1.00348 1.62008 1.06064 1.28873 1.29789 1.21979 0.96014 0.97802 0.88963 1.18828 0.91045 0.94347 0.95166 1.21666 0.98629 1.41879 0.96040 0.92383 1.25948 0.97803 0.95940 0.99884 1.70127 1.10388 1.47885 1.28722 0.85406 0.78345 0.77986 0.79344 1.18578 1.20364 1.20304 1.22042 0.99306 0.89108 0.95741 1.21788 1.00672 0.96162 0.93736 0.90009 1.21604 1.00814 0.95608 0.97360 1.22175 1.01216 1.00541 0.94513 1.22085 0.99942 0.86607 0.98968 1.60640 1.19810 1.29581 1.22093 1.21741 0.98430 0.98527 0.86325 0.92076 0.91651 0.92603 0.93784 0.92247 0.89511 0.95440 0.96618 0.91950 0.98941 0.99553 0.92821 0.93363 0.95172 0.93149 0.91303 0.90966 0.90204 0.89162 0.92407 0.83529 0.91302 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 71.98 0.71 -2.07 16 2 C -0.12 -3.19 5.98 30.59 0.18 -3.01 16 3 C 0.06 1.56 4.83 86.30 0.42 1.98 16 4 N -0.54 -19.43 3.84 -896.26 -3.44 -22.87 16 5 C 0.08 3.48 4.75 86.30 0.41 3.89 16 6 C 0.04 2.40 5.01 29.85 0.15 2.55 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.00 0.13 5.46 84.66 0.46 0.59 16 10 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 11 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 15 C 0.07 2.21 4.18 86.30 0.36 2.57 16 16 C -0.10 -2.68 2.28 -10.74 -0.02 -2.70 16 17 H 0.08 1.89 6.09 -2.39 -0.01 1.88 16 18 C -0.12 -2.58 5.29 30.67 0.16 -2.42 16 19 C -0.15 -2.54 6.08 30.65 0.19 -2.35 16 20 C 0.05 1.07 6.55 86.33 0.57 1.64 16 21 N -0.69 -16.64 6.87 -514.01 -3.53 -20.17 16 22 C 0.08 2.36 5.71 86.33 0.49 2.85 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 1.35 6.89 -2.39 -0.02 1.33 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 2.07 5.82 -2.39 -0.01 2.06 16 29 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 30 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 31 H 0.06 2.68 6.55 -2.39 -0.02 2.66 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H -0.01 -0.83 6.96 -2.39 -0.02 -0.84 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 35 H 0.05 1.92 6.72 -2.39 -0.02 1.91 16 36 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.35 6.96 8.86 -89.69 -0.79 6.17 16 44 H 0.07 2.32 7.78 -2.39 -0.02 2.30 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -65.18 343.51 -0.22 -65.40 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.13 Total: 16.35 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 4.31 Total: -28.04 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -6.68 Total: -100.83 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.18 -0.22 -65.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233037414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.392 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds