Wall clock time and date at job start Mon Mar 30 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47559 * 2 1 4 4 N 1.46897 * 109.47652 * 184.03219 * 3 2 1 5 5 C 1.46901 * 111.00013 * 303.84463 * 4 3 2 6 6 C 1.53001 * 109.46997 * 305.35235 * 5 4 3 7 7 H 1.09000 * 109.50606 * 29.81646 * 6 5 4 8 8 C 1.53115 * 109.50398 * 149.90395 * 6 5 4 9 9 C 1.53119 * 109.16307 * 177.59523 * 8 6 5 10 10 C 1.53043 * 109.27416 * 302.34466 * 9 8 6 11 11 N 1.46844 * 109.52470 * 59.17944 * 10 9 8 12 12 C 1.46850 * 111.19773 * 298.25507 * 11 10 9 13 13 C 1.46899 * 111.00069 * 179.88637 * 4 3 2 14 14 H 1.09006 * 109.46834 * 51.61336 * 13 4 3 15 15 C 1.52997 * 109.47273 * 171.61171 * 13 4 3 16 16 C 1.50700 * 109.47249 * 291.61690 * 13 4 3 17 17 H 1.07997 * 119.99779 * 359.97438 * 16 13 4 18 18 C 1.37876 * 119.99734 * 180.02562 * 16 13 4 19 19 N 1.31514 * 120.00728 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99973 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47048 * 59.99749 * 20 18 16 22 22 H 1.48498 * 109.47465 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47295 * 299.99876 * 20 18 16 24 24 H 1.09001 * 109.47140 * 60.00302 * 1 2 3 25 25 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47403 * 299.99974 * 1 2 3 27 27 H 1.09002 * 109.47088 * 120.00251 * 2 1 3 28 28 H 1.09007 * 109.47361 * 240.00096 * 2 1 3 29 29 H 1.09001 * 109.47175 * 304.04168 * 3 2 1 30 30 H 1.09012 * 109.46772 * 64.03076 * 3 2 1 31 31 H 1.08996 * 109.47060 * 65.35123 * 5 4 3 32 32 H 1.08997 * 109.46818 * 185.35470 * 5 4 3 33 33 H 1.09002 * 109.52207 * 297.49564 * 8 6 5 34 34 H 1.09000 * 109.52524 * 57.68937 * 8 6 5 35 35 H 1.08996 * 109.50446 * 62.28221 * 9 8 6 36 36 H 1.08999 * 109.50230 * 182.36583 * 9 8 6 37 37 H 1.08997 * 109.45934 * 179.19850 * 10 9 8 38 38 H 1.09007 * 109.46366 * 299.16153 * 10 9 8 39 39 H 1.00907 * 110.99950 * 174.16112 * 11 10 9 40 40 H 1.09004 * 109.46243 * 301.72570 * 12 11 10 41 41 H 1.08994 * 109.45916 * 181.76133 * 12 11 10 42 42 H 1.08997 * 109.47419 * 180.02562 * 15 13 4 43 43 H 1.09000 * 109.47099 * 300.00355 * 15 13 4 44 44 H 1.09006 * 109.47056 * 60.00301 * 15 13 4 45 45 H 0.96994 * 120.00617 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5058 1.4436 -0.0974 5 6 4.1060 0.6537 0.9860 6 6 3.5974 1.1681 2.3343 7 1 2.5942 1.5768 2.2129 8 6 3.5613 0.0148 3.3408 9 6 3.1089 0.5498 4.7022 10 6 4.0617 1.6604 5.1506 11 7 4.0600 2.7400 4.1552 12 6 4.5360 2.2607 2.8512 13 6 4.0319 2.8151 -0.1028 14 1 3.6211 3.3652 0.7438 15 6 5.5575 2.7765 0.0059 16 6 3.6368 3.4996 -1.3860 17 1 3.0536 2.9688 -2.1237 18 6 4.0209 4.8033 -1.6183 19 7 4.7316 5.4496 -0.7201 20 14 3.5318 5.6516 -3.2091 21 1 2.0510 5.6895 -3.3149 22 1 4.0646 7.0377 -3.2151 23 1 4.0914 4.9018 -4.3623 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6188 1.9768 -0.8516 30 1 1.7368 1.9350 0.9240 31 1 3.8285 -0.3938 0.8687 32 1 5.1911 0.7488 0.9468 33 1 2.8607 -0.7465 2.9975 34 1 4.5567 -0.4198 3.4327 35 1 2.0982 0.9492 4.6187 36 1 3.1216 -0.2585 5.4334 37 1 3.7341 2.0533 6.1131 38 1 5.0698 1.2571 5.2472 39 1 4.6071 3.5259 4.4732 40 1 5.5419 1.8546 2.9587 41 1 4.5529 3.0897 2.1438 42 1 5.9479 3.7942 0.0023 43 1 5.8432 2.2814 0.9340 44 1 5.9683 2.2265 -0.8408 45 1 5.0014 6.3669 -0.8835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233056128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:22 Heat of formation + Delta-G solvation = -2.726273 kcal Electronic energy + Delta-G solvation = -20839.792296 eV Core-core repulsion = 18084.748294 eV Total energy + Delta-G solvation = -2755.044003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.31248 -36.78323 -33.70333 -32.58384 -31.74187 -30.39881 -28.74197 -26.22677 -24.69365 -23.78680 -23.41282 -21.79381 -20.26874 -19.55380 -18.57479 -16.64601 -15.89802 -15.49896 -14.75697 -14.39395 -14.20791 -14.02189 -13.71973 -13.48848 -13.30806 -12.81475 -12.48038 -12.27333 -11.89582 -11.69251 -11.43997 -11.32580 -11.10514 -10.90460 -10.76345 -10.68013 -10.65013 -10.42999 -10.31386 -10.00075 -9.96218 -9.84635 -9.71228 -9.43705 -8.85882 -8.34033 -8.13491 -6.97607 -5.94975 -3.98013 3.35983 3.39998 3.43348 4.46228 4.49377 5.01950 5.03729 5.11013 5.22318 5.36984 5.41421 5.49074 5.56791 5.62666 5.73481 5.81217 5.83705 5.95555 6.03338 6.11534 6.16539 6.18751 6.23012 6.27097 6.28968 6.34909 6.42682 6.52625 6.72429 6.74096 6.80617 6.86365 7.05041 7.07822 7.19029 7.35728 7.57943 7.67829 7.79460 7.91065 8.33007 8.40139 8.69574 9.08458 9.66460 11.11492 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.007445 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.755458 B = 3759.891648 C = 4714.926319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.062 3.938 4 N -0.530 5.530 5 C 0.051 3.949 6 C -0.123 4.123 7 H 0.085 0.915 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.058 3.942 11 N -0.691 5.691 12 C 0.053 3.947 13 C 0.211 3.789 14 H 0.009 0.991 15 C -0.145 4.145 16 C -0.498 4.498 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.340 0.660 40 H 0.021 0.979 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.017 0.983 44 H 0.032 0.968 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -9.164 8.683 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.066 4.066 4 N -0.253 5.253 5 C -0.079 4.079 6 C -0.143 4.143 7 H 0.103 0.897 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.071 4.071 11 N -0.321 5.321 12 C -0.076 4.076 13 C 0.105 3.895 14 H 0.027 0.973 15 C -0.203 4.203 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.157 0.843 40 H 0.039 0.961 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.870 -9.266 8.081 12.625 hybrid contribution 0.572 0.836 0.153 1.024 sum -2.298 -8.430 8.234 12.006 Atomic orbital electron populations 1.21723 0.96610 1.00644 1.01636 1.21615 0.94667 0.98191 1.01636 1.22019 0.89379 0.94772 1.00432 1.62426 1.04340 1.16850 1.41676 1.22371 1.00200 0.97370 0.87935 1.21978 1.01397 0.95065 0.95868 0.89670 1.21619 1.00576 0.97793 0.95003 1.21565 0.99902 0.97002 0.96909 1.21880 0.97456 0.92745 0.95047 1.60287 1.59651 1.08813 1.03387 1.22518 0.94733 0.99635 0.90692 1.19299 0.91493 0.82306 0.96401 0.97336 1.22100 0.98601 1.02729 0.96846 1.21121 1.33051 0.96557 1.02964 0.92206 1.24901 0.95340 0.97323 0.96675 1.69862 1.37876 1.11343 1.34383 0.86627 0.78743 0.78372 0.84026 1.20422 1.21476 1.20357 0.92791 0.93465 0.93186 0.92693 0.91795 0.90521 0.95500 0.92146 0.90816 0.92276 0.92781 0.91468 0.92354 0.91584 0.95910 0.84296 0.96078 0.87773 0.89731 0.96430 0.94909 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.15 0.37 -1.63 16 2 C -0.12 -1.93 5.43 -26.74 -0.15 -2.07 16 3 C 0.06 1.20 4.32 -3.83 -0.02 1.19 16 4 N -0.53 -11.17 4.64 -228.04 -1.06 -12.23 16 5 C 0.05 0.91 4.44 -3.82 -0.02 0.89 16 6 C -0.12 -2.05 1.75 -90.54 -0.16 -2.21 16 7 H 0.09 1.60 5.25 -51.93 -0.27 1.33 16 8 C -0.11 -1.54 5.10 -26.61 -0.14 -1.68 16 9 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 10 C 0.06 0.76 6.55 -3.83 -0.03 0.74 16 11 N -0.69 -10.81 6.85 -113.81 -0.78 -11.59 16 12 C 0.05 0.92 4.29 -3.83 -0.02 0.90 16 13 C 0.21 5.16 1.34 -68.87 -0.09 5.06 16 14 H 0.01 0.25 6.05 -51.93 -0.31 -0.07 16 15 C -0.14 -3.44 7.48 37.16 0.28 -3.16 16 16 C -0.50 -13.62 7.99 -34.44 -0.28 -13.90 16 17 H 0.06 1.66 7.27 -52.49 -0.38 1.27 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -25.30 11.32 55.43 0.63 -24.67 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.82 6.26 -51.93 -0.32 0.49 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.64 7.02 -51.93 -0.36 1.27 16 30 H 0.03 0.54 5.89 -51.92 -0.31 0.24 16 31 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16 32 H 0.07 1.37 5.40 -51.93 -0.28 1.09 16 33 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.34 4.88 8.90 -39.29 -0.35 4.53 16 40 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 41 H 0.10 2.19 4.24 -51.93 -0.22 1.97 16 42 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 43 H 0.02 0.36 4.00 -51.93 -0.21 0.15 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -27.70 321.66 -9.71 -37.41 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.84 Total: 5.72 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.49 Total: -15.99 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -1.21 Total: -48.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.70 -9.71 -37.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233056128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.688 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds