Wall clock time and date at job start Mon Mar 30 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47559 * 2 1 4 4 N 1.46897 * 109.47652 * 184.03219 * 3 2 1 5 5 C 1.46901 * 111.00013 * 303.84463 * 4 3 2 6 6 C 1.53001 * 109.46997 * 305.35235 * 5 4 3 7 7 H 1.09000 * 109.50606 * 29.81646 * 6 5 4 8 8 C 1.53115 * 109.50398 * 149.90395 * 6 5 4 9 9 C 1.53119 * 109.16307 * 177.59523 * 8 6 5 10 10 C 1.53043 * 109.27416 * 302.34466 * 9 8 6 11 11 N 1.46844 * 109.52470 * 59.17944 * 10 9 8 12 12 C 1.46850 * 111.19773 * 298.25507 * 11 10 9 13 13 C 1.46899 * 111.00069 * 179.88637 * 4 3 2 14 14 H 1.09006 * 109.46834 * 51.61336 * 13 4 3 15 15 C 1.52997 * 109.47273 * 171.61171 * 13 4 3 16 16 C 1.50700 * 109.47249 * 291.61690 * 13 4 3 17 17 H 1.07997 * 119.99779 * 359.97438 * 16 13 4 18 18 C 1.37876 * 119.99734 * 180.02562 * 16 13 4 19 19 N 1.31514 * 120.00728 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99973 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47048 * 59.99749 * 20 18 16 22 22 H 1.48498 * 109.47465 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47295 * 299.99876 * 20 18 16 24 24 H 1.09001 * 109.47140 * 60.00302 * 1 2 3 25 25 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47403 * 299.99974 * 1 2 3 27 27 H 1.09002 * 109.47088 * 120.00251 * 2 1 3 28 28 H 1.09007 * 109.47361 * 240.00096 * 2 1 3 29 29 H 1.09001 * 109.47175 * 304.04168 * 3 2 1 30 30 H 1.09012 * 109.46772 * 64.03076 * 3 2 1 31 31 H 1.08996 * 109.47060 * 65.35123 * 5 4 3 32 32 H 1.08997 * 109.46818 * 185.35470 * 5 4 3 33 33 H 1.09002 * 109.52207 * 297.49564 * 8 6 5 34 34 H 1.09000 * 109.52524 * 57.68937 * 8 6 5 35 35 H 1.08996 * 109.50446 * 62.28221 * 9 8 6 36 36 H 1.08999 * 109.50230 * 182.36583 * 9 8 6 37 37 H 1.08997 * 109.45934 * 179.19850 * 10 9 8 38 38 H 1.09007 * 109.46366 * 299.16153 * 10 9 8 39 39 H 1.00907 * 110.99950 * 174.16112 * 11 10 9 40 40 H 1.09004 * 109.46243 * 301.72570 * 12 11 10 41 41 H 1.08994 * 109.45916 * 181.76133 * 12 11 10 42 42 H 1.08997 * 109.47419 * 180.02562 * 15 13 4 43 43 H 1.09000 * 109.47099 * 300.00355 * 15 13 4 44 44 H 1.09006 * 109.47056 * 60.00301 * 15 13 4 45 45 H 0.96994 * 120.00617 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5058 1.4436 -0.0974 5 6 4.1060 0.6537 0.9860 6 6 3.5974 1.1681 2.3343 7 1 2.5942 1.5768 2.2129 8 6 3.5613 0.0148 3.3408 9 6 3.1089 0.5498 4.7022 10 6 4.0617 1.6604 5.1506 11 7 4.0600 2.7400 4.1552 12 6 4.5360 2.2607 2.8512 13 6 4.0319 2.8151 -0.1028 14 1 3.6211 3.3652 0.7438 15 6 5.5575 2.7765 0.0059 16 6 3.6368 3.4996 -1.3860 17 1 3.0536 2.9688 -2.1237 18 6 4.0209 4.8033 -1.6183 19 7 4.7316 5.4496 -0.7201 20 14 3.5318 5.6516 -3.2091 21 1 2.0510 5.6895 -3.3149 22 1 4.0646 7.0377 -3.2151 23 1 4.0914 4.9018 -4.3623 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6188 1.9768 -0.8516 30 1 1.7368 1.9350 0.9240 31 1 3.8285 -0.3938 0.8687 32 1 5.1911 0.7488 0.9468 33 1 2.8607 -0.7465 2.9975 34 1 4.5567 -0.4198 3.4327 35 1 2.0982 0.9492 4.6187 36 1 3.1216 -0.2585 5.4334 37 1 3.7341 2.0533 6.1131 38 1 5.0698 1.2571 5.2472 39 1 4.6071 3.5259 4.4732 40 1 5.5419 1.8546 2.9587 41 1 4.5529 3.0897 2.1438 42 1 5.9479 3.7942 0.0023 43 1 5.8432 2.2814 0.9340 44 1 5.9683 2.2265 -0.8408 45 1 5.0014 6.3669 -0.8835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233056128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:22 Heat of formation + Delta-G solvation = -21.153850 kcal Electronic energy + Delta-G solvation = -20840.591376 eV Core-core repulsion = 18084.748294 eV Total energy + Delta-G solvation = -2755.843082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74852 -38.19055 -35.46369 -34.08360 -33.13387 -31.77825 -30.46392 -27.88793 -26.48354 -25.28298 -24.63578 -23.13726 -21.82035 -20.86243 -20.15698 -18.49466 -17.38809 -17.13679 -16.43626 -15.93052 -15.57034 -15.38736 -15.17392 -14.87227 -14.59320 -14.13456 -13.96118 -13.59564 -13.50787 -13.15146 -12.98817 -12.82484 -12.71913 -12.56368 -12.49460 -12.17759 -12.05274 -12.01807 -11.80913 -11.64664 -11.52537 -11.32390 -11.17245 -10.90548 -10.80683 -10.44268 -9.36725 -8.69721 -8.06496 -6.17003 1.41666 1.42991 1.50457 2.44208 3.20426 3.30083 3.48805 3.86198 3.98419 4.01678 4.19640 4.20484 4.31438 4.46715 4.53120 4.59095 4.65326 4.71161 4.74644 4.80608 4.84939 4.92219 4.95918 5.00900 5.02727 5.08299 5.09402 5.11073 5.19230 5.23386 5.32756 5.42922 5.43137 5.48429 5.60331 5.63672 5.79944 5.87287 6.13654 6.35689 6.47762 6.54631 6.86366 6.98533 7.51506 8.97892 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.007445 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.755458 B = 3759.891648 C = 4714.926319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.067 3.933 4 N -0.540 5.540 5 C 0.053 3.947 6 C -0.114 4.114 7 H 0.062 0.938 8 C -0.107 4.107 9 C -0.114 4.114 10 C 0.056 3.944 11 N -0.703 5.703 12 C 0.059 3.941 13 C 0.223 3.777 14 H -0.022 1.022 15 C -0.129 4.129 16 C -0.518 4.518 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.344 0.656 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -11.094 9.572 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.061 4.061 4 N -0.263 5.263 5 C -0.076 4.076 6 C -0.134 4.134 7 H 0.081 0.919 8 C -0.145 4.145 9 C -0.152 4.152 10 C -0.073 4.073 11 N -0.335 5.335 12 C -0.070 4.070 13 C 0.116 3.884 14 H -0.004 1.004 15 C -0.187 4.187 16 C -0.556 4.556 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.779 3.221 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.161 0.839 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.426 -11.212 8.980 14.768 hybrid contribution 0.742 1.438 -0.075 1.619 sum -2.684 -9.774 8.905 13.492 Atomic orbital electron populations 1.21692 0.94746 1.02273 1.01480 1.21522 0.96225 0.95101 1.02125 1.21977 0.88368 0.97223 0.98521 1.62348 1.05430 1.14911 1.43639 1.22419 0.99504 0.97927 0.87756 1.21825 0.99552 0.95949 0.96122 0.91946 1.21595 1.01675 0.96611 0.94626 1.21581 0.98991 0.97632 0.96952 1.22011 0.98167 0.92175 0.94930 1.60270 1.59767 1.10073 1.03378 1.22266 0.95253 0.98381 0.91057 1.18988 0.91653 0.83817 0.93937 1.00446 1.21888 0.98094 1.01069 0.97664 1.21429 1.33084 0.97205 1.03904 0.93225 1.25627 0.95371 0.97970 0.99627 1.69995 1.38507 1.11447 1.35831 0.85693 0.78507 0.77430 0.80467 1.19978 1.20931 1.19894 0.93333 0.90874 0.93060 0.91322 0.91964 0.93355 0.96665 0.89821 0.91583 0.90845 0.91779 0.92540 0.89394 0.89750 0.95114 0.83859 0.95808 0.91956 0.92481 0.93959 0.95753 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.33 5.43 30.59 0.17 -3.17 16 3 C 0.07 2.65 4.32 86.30 0.37 3.02 16 4 N -0.54 -23.11 4.64 -875.38 -4.06 -27.17 16 5 C 0.05 1.84 4.44 86.30 0.38 2.22 16 6 C -0.11 -3.72 1.75 -10.74 -0.02 -3.74 16 7 H 0.06 2.36 5.25 -2.39 -0.01 2.35 16 8 C -0.11 -2.64 5.10 30.67 0.16 -2.48 16 9 C -0.11 -2.55 6.09 30.65 0.19 -2.36 16 10 C 0.06 1.33 6.55 86.33 0.57 1.89 16 11 N -0.70 -21.66 6.85 -513.98 -3.52 -25.18 16 12 C 0.06 2.09 4.29 86.33 0.37 2.46 16 13 C 0.22 11.32 1.34 44.17 0.06 11.38 16 14 H -0.02 -1.23 6.05 -2.38 -0.01 -1.25 16 15 C -0.13 -6.33 7.48 71.98 0.54 -5.79 16 16 C -0.52 -29.25 7.99 25.60 0.20 -29.04 16 17 H 0.05 2.84 7.27 -2.91 -0.02 2.82 16 18 C 0.01 0.70 5.30 84.65 0.45 1.15 16 19 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 20 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.86 6.26 -2.39 -0.01 1.84 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 2.14 7.02 -2.39 -0.02 2.12 16 30 H 0.02 0.64 5.89 -2.38 -0.01 0.63 16 31 H 0.08 2.54 6.35 -2.39 -0.02 2.53 16 32 H 0.07 2.41 5.40 -2.39 -0.01 2.39 16 33 H 0.07 1.62 7.88 -2.39 -0.02 1.60 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.34 9.86 8.90 -89.69 -0.80 9.06 16 40 H 0.02 0.81 7.72 -2.39 -0.02 0.79 16 41 H 0.06 2.74 4.24 -2.39 -0.01 2.73 16 42 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 43 H 0.04 1.81 4.00 -2.39 -0.01 1.80 16 44 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -61.38 321.66 -1.00 -62.38 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.16 Total: 23.67 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.15 Total: -27.35 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -7.34 Total: -105.58 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.38 -1.00 -62.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233056128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.224 kcal (2) G-P(sol) polarization free energy of solvation -61.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds