Wall clock time and date at job start Mon Mar 30 2020 07:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46863 * 2 1 4 4 N 1.46901 * 109.47512 * 119.99782 * 2 1 3 5 5 C 1.46904 * 110.99555 * 56.61171 * 4 2 1 6 6 C 1.50697 * 109.47244 * 66.40842 * 5 4 2 7 7 H 1.07999 * 119.99651 * 356.96910 * 6 5 4 8 8 C 1.37873 * 119.99907 * 176.96811 * 6 5 4 9 9 N 1.31517 * 120.00269 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99900 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47384 * 59.99553 * 10 8 6 12 12 H 1.48500 * 109.47230 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46796 * 299.99754 * 10 8 6 14 14 C 1.46895 * 110.99955 * 292.65889 * 4 2 1 15 15 H 1.08999 * 108.87391 * 341.37874 * 14 4 2 16 16 C 1.45542 * 108.89618 * 99.98597 * 14 4 2 17 17 C 1.54240 * 112.40870 * 182.68383 * 16 14 4 18 18 C 1.50479 * 108.52510 * 280.00958 * 17 16 14 19 19 C 1.54063 * 112.49572 * 94.14775 * 18 17 16 20 20 C 1.54069 * 112.82081 * 318.29163 * 19 18 17 21 21 C 1.50558 * 112.41081 * 318.27581 * 20 19 18 22 22 H 1.08993 * 109.57842 * 213.92259 * 21 20 19 23 23 N 1.46902 * 109.71765 * 334.52935 * 21 20 19 24 24 H 1.09003 * 109.47052 * 305.64037 * 1 2 3 25 25 H 1.08993 * 109.47677 * 65.64459 * 1 2 3 26 26 H 1.09006 * 109.46885 * 185.64718 * 1 2 3 27 27 H 1.08998 * 109.47019 * 240.00615 * 2 1 3 28 28 H 1.09000 * 109.47661 * 171.90260 * 3 2 1 29 29 H 1.09006 * 109.47250 * 291.90375 * 3 2 1 30 30 H 1.09006 * 109.47284 * 51.90238 * 3 2 1 31 31 H 1.08997 * 109.47088 * 306.40511 * 5 4 2 32 32 H 1.09004 * 109.46793 * 186.41059 * 5 4 2 33 33 H 0.96998 * 119.99942 * 180.02562 * 9 8 6 34 34 H 1.08997 * 108.89719 * 303.44116 * 16 14 4 35 35 H 1.09002 * 108.89639 * 62.02829 * 16 14 4 36 36 H 1.09008 * 109.62560 * 39.71661 * 17 16 14 37 37 H 1.08998 * 109.63331 * 160.09841 * 17 16 14 38 38 H 1.08992 * 108.87650 * 214.92807 * 18 17 16 39 39 H 1.08999 * 108.87009 * 333.37573 * 18 17 16 40 40 H 1.09000 * 108.81261 * 79.15176 * 19 18 17 41 41 H 1.08996 * 108.81463 * 197.42540 * 19 18 17 42 42 H 1.08996 * 108.87523 * 79.05896 * 20 19 18 43 43 H 1.08997 * 108.87392 * 197.60635 * 20 19 18 44 44 H 1.00906 * 110.99634 * 207.21505 * 23 21 20 45 45 H 1.00891 * 111.00247 * 331.17052 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.4837 -2.0581 1.2746 6 6 2.0426 -2.8802 0.1420 7 1 2.6888 -2.4206 -0.5912 8 6 1.7291 -4.2191 0.0419 9 7 0.9426 -4.7789 0.9351 10 14 2.4225 -5.2383 -1.3616 11 1 3.9061 -5.2209 -1.3002 12 1 1.9381 -6.6372 -1.2440 13 1 1.9740 -4.6670 -2.6569 14 6 1.6972 0.0674 2.4145 15 1 1.4749 1.0978 2.1374 16 6 0.5192 -0.5178 3.0376 17 6 0.0682 0.2611 4.2901 18 6 0.9405 -0.1466 5.4465 19 6 2.1410 0.7991 5.6414 20 6 2.8011 1.2089 4.3110 21 6 2.9226 0.0553 3.3512 22 1 3.8339 0.1638 2.7633 23 7 2.9603 -1.2090 4.0982 24 1 -0.3633 0.5988 0.8352 25 1 -0.3634 0.4238 -0.9361 26 1 -0.3633 -1.0227 0.1011 27 1 1.8933 -0.5137 -0.8900 28 1 3.1203 1.4461 0.1447 29 1 1.7996 1.9129 -0.9535 30 1 1.5632 1.9965 0.8088 31 1 0.3968 -2.0264 1.1987 32 1 1.7685 -2.5084 2.2255 33 1 0.7224 -5.7209 0.8648 34 1 -0.2959 -0.5253 2.3140 35 1 0.7451 -1.5448 3.3247 36 1 0.1722 1.3316 4.1127 37 1 -0.9727 0.0263 4.5123 38 1 0.3413 -0.1481 6.3569 39 1 1.3119 -1.1560 5.2692 40 1 1.8008 1.6975 6.1564 41 1 2.8841 0.3002 6.2635 42 1 2.2026 1.9931 3.8473 43 1 3.7968 1.6013 4.5175 44 1 3.4632 -1.9174 3.5848 45 1 3.3592 -1.0755 5.0153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250481778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:24 Heat of formation + Delta-G solvation = 14.285253 kcal Electronic energy + Delta-G solvation = -21333.091060 eV Core-core repulsion = 18578.784732 eV Total energy + Delta-G solvation = -2754.306328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88204 -36.72659 -32.85363 -32.68575 -31.84375 -29.59515 -28.99660 -26.85698 -25.92184 -23.91773 -23.25559 -21.94287 -19.78588 -18.87082 -17.94576 -16.27845 -15.90302 -15.73968 -14.83942 -14.54536 -14.10765 -13.89679 -13.48343 -13.22525 -12.94804 -12.76997 -12.44081 -12.06540 -11.79394 -11.73669 -11.59641 -11.25799 -10.98680 -10.89276 -10.65702 -10.55982 -10.44033 -10.38070 -10.23147 -10.05433 -9.98668 -9.88468 -9.50207 -9.26135 -8.83741 -8.28724 -7.85625 -6.93373 -5.91452 -3.91152 3.37468 3.41910 3.44678 4.50302 4.91147 5.01294 5.12441 5.31631 5.34688 5.43822 5.59234 5.62167 5.68221 5.76116 5.86044 5.91310 5.95511 6.00442 6.08522 6.14066 6.16866 6.22454 6.28582 6.38412 6.42844 6.54301 6.58452 6.63914 6.67160 6.82919 6.89906 6.98136 7.04343 7.06671 7.34104 7.58556 7.65360 7.78798 7.92905 8.08275 8.31657 8.47630 8.77408 9.17136 9.71763 11.18438 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.007424 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.247569 B = 3770.680174 C = 4254.471787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 C -0.145 4.145 4 N -0.529 5.529 5 C 0.187 3.813 6 C -0.505 4.505 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.092 3.908 15 H 0.059 0.941 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.122 4.122 21 C 0.111 3.889 22 H 0.046 0.954 23 N -0.831 5.831 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.048 0.952 31 H -0.002 1.002 32 H 0.049 0.951 33 H 0.259 0.741 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.345 0.655 45 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 11.492 6.376 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 C -0.203 4.203 4 N -0.252 5.252 5 C 0.062 3.938 6 C -0.544 4.544 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.206 1.206 14 C -0.018 4.018 15 H 0.077 0.923 16 C -0.178 4.178 17 C -0.145 4.145 18 C -0.162 4.162 19 C -0.140 4.140 20 C -0.161 4.161 21 C -0.001 4.001 22 H 0.064 0.936 23 N -0.362 5.362 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.016 0.984 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.158 0.842 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.181 11.287 6.300 12.980 hybrid contribution 0.415 -0.387 -0.780 0.964 sum 1.596 10.900 5.520 12.322 Atomic orbital electron populations 1.22559 0.98900 1.02877 0.99955 1.21533 0.91919 0.93083 0.95969 1.21999 1.01317 0.96807 1.00167 1.62585 1.59175 1.04085 0.99378 1.19918 0.93386 0.82429 0.98021 1.21222 1.28869 0.93797 1.10479 0.92577 1.24926 0.95530 0.97836 0.96163 1.69950 1.36557 1.12084 1.35040 0.86696 0.79352 0.79211 0.82869 1.20435 1.21537 1.20556 1.20620 0.93192 0.97009 0.90942 0.92342 1.21201 0.97413 1.02991 0.96194 1.21197 0.98016 0.98999 0.96329 1.21556 0.95235 1.02830 0.96595 1.21689 0.97610 0.98609 0.96109 1.21576 0.99674 0.98503 0.96304 1.21037 0.97666 0.88340 0.93089 0.93643 1.59056 1.62028 1.09123 1.06020 0.93664 0.93973 0.90816 0.89896 0.92454 0.93444 0.93327 0.98427 0.93351 0.93151 0.93148 0.88525 0.93591 0.93347 0.94631 0.87776 0.93669 0.93033 0.92035 0.93201 0.84171 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 7.68 37.16 0.29 -3.13 16 2 C 0.08 1.60 2.79 -67.71 -0.19 1.41 16 3 C -0.15 -2.26 8.70 37.16 0.32 -1.94 16 4 N -0.53 -10.81 4.37 -223.60 -0.98 -11.79 16 5 C 0.19 4.62 3.12 -4.97 -0.02 4.60 16 6 C -0.50 -13.88 8.62 -34.44 -0.30 -14.18 16 7 H 0.06 1.55 7.01 -52.49 -0.37 1.18 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.09 1.59 0.97 -70.58 -0.07 1.52 16 15 H 0.06 0.98 4.26 -51.93 -0.22 0.76 16 16 C -0.14 -2.53 3.21 -29.60 -0.09 -2.62 16 17 C -0.11 -1.62 5.61 -27.34 -0.15 -1.77 16 18 C -0.12 -1.73 5.26 -27.44 -0.14 -1.88 16 19 C -0.10 -1.24 5.13 -25.62 -0.13 -1.37 16 20 C -0.12 -1.57 5.15 -27.39 -0.14 -1.71 16 21 C 0.11 1.71 3.29 -68.28 -0.22 1.49 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 N -0.83 -12.75 4.85 -5.15 -0.02 -12.77 16 24 H 0.04 0.79 6.26 -51.93 -0.32 0.46 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.60 5.87 -51.93 -0.31 1.29 16 27 H 0.08 1.77 6.92 -51.93 -0.36 1.41 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.72 6.09 -51.93 -0.32 0.40 16 31 H 0.00 -0.05 4.64 -51.93 -0.24 -0.29 16 32 H 0.05 1.28 5.77 -51.93 -0.30 0.98 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.05 0.98 4.85 -51.93 -0.25 0.73 16 35 H 0.10 2.03 4.63 -51.93 -0.24 1.79 16 36 H 0.05 0.66 6.98 -51.92 -0.36 0.30 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.63 5.07 -51.93 -0.26 1.36 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.57 7.20 -51.93 -0.37 0.20 16 42 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.34 5.91 8.66 -39.29 -0.34 5.57 16 45 H 0.33 4.26 6.69 -39.30 -0.26 4.00 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -27.79 309.33 -8.97 -36.76 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.39 Total: 10.12 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.95 Total: -18.10 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.27 Total: -50.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.79 -8.97 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250481778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.045 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds