Wall clock time and date at job start Mon Mar 30 2020 07:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46863 * 2 1 4 4 N 1.46901 * 109.47512 * 119.99782 * 2 1 3 5 5 C 1.46904 * 110.99555 * 56.61171 * 4 2 1 6 6 C 1.50697 * 109.47244 * 66.40842 * 5 4 2 7 7 H 1.07999 * 119.99651 * 356.96910 * 6 5 4 8 8 C 1.37873 * 119.99907 * 176.96811 * 6 5 4 9 9 N 1.31517 * 120.00269 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99900 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47384 * 59.99553 * 10 8 6 12 12 H 1.48500 * 109.47230 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46796 * 299.99754 * 10 8 6 14 14 C 1.46895 * 110.99955 * 292.65889 * 4 2 1 15 15 H 1.08999 * 108.87391 * 341.37874 * 14 4 2 16 16 C 1.45542 * 108.89618 * 99.98597 * 14 4 2 17 17 C 1.54240 * 112.40870 * 182.68383 * 16 14 4 18 18 C 1.50479 * 108.52510 * 280.00958 * 17 16 14 19 19 C 1.54063 * 112.49572 * 94.14775 * 18 17 16 20 20 C 1.54069 * 112.82081 * 318.29163 * 19 18 17 21 21 C 1.50558 * 112.41081 * 318.27581 * 20 19 18 22 22 H 1.08993 * 109.57842 * 213.92259 * 21 20 19 23 23 N 1.46902 * 109.71765 * 334.52935 * 21 20 19 24 24 H 1.09003 * 109.47052 * 305.64037 * 1 2 3 25 25 H 1.08993 * 109.47677 * 65.64459 * 1 2 3 26 26 H 1.09006 * 109.46885 * 185.64718 * 1 2 3 27 27 H 1.08998 * 109.47019 * 240.00615 * 2 1 3 28 28 H 1.09000 * 109.47661 * 171.90260 * 3 2 1 29 29 H 1.09006 * 109.47250 * 291.90375 * 3 2 1 30 30 H 1.09006 * 109.47284 * 51.90238 * 3 2 1 31 31 H 1.08997 * 109.47088 * 306.40511 * 5 4 2 32 32 H 1.09004 * 109.46793 * 186.41059 * 5 4 2 33 33 H 0.96998 * 119.99942 * 180.02562 * 9 8 6 34 34 H 1.08997 * 108.89719 * 303.44116 * 16 14 4 35 35 H 1.09002 * 108.89639 * 62.02829 * 16 14 4 36 36 H 1.09008 * 109.62560 * 39.71661 * 17 16 14 37 37 H 1.08998 * 109.63331 * 160.09841 * 17 16 14 38 38 H 1.08992 * 108.87650 * 214.92807 * 18 17 16 39 39 H 1.08999 * 108.87009 * 333.37573 * 18 17 16 40 40 H 1.09000 * 108.81261 * 79.15176 * 19 18 17 41 41 H 1.08996 * 108.81463 * 197.42540 * 19 18 17 42 42 H 1.08996 * 108.87523 * 79.05896 * 20 19 18 43 43 H 1.08997 * 108.87392 * 197.60635 * 20 19 18 44 44 H 1.00906 * 110.99634 * 207.21505 * 23 21 20 45 45 H 1.00891 * 111.00247 * 331.17052 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.4837 -2.0581 1.2746 6 6 2.0426 -2.8802 0.1420 7 1 2.6888 -2.4206 -0.5912 8 6 1.7291 -4.2191 0.0419 9 7 0.9426 -4.7789 0.9351 10 14 2.4225 -5.2383 -1.3616 11 1 3.9061 -5.2209 -1.3002 12 1 1.9381 -6.6372 -1.2440 13 1 1.9740 -4.6670 -2.6569 14 6 1.6972 0.0674 2.4145 15 1 1.4749 1.0978 2.1374 16 6 0.5192 -0.5178 3.0376 17 6 0.0682 0.2611 4.2901 18 6 0.9405 -0.1466 5.4465 19 6 2.1410 0.7991 5.6414 20 6 2.8011 1.2089 4.3110 21 6 2.9226 0.0553 3.3512 22 1 3.8339 0.1638 2.7633 23 7 2.9603 -1.2090 4.0982 24 1 -0.3633 0.5988 0.8352 25 1 -0.3634 0.4238 -0.9361 26 1 -0.3633 -1.0227 0.1011 27 1 1.8933 -0.5137 -0.8900 28 1 3.1203 1.4461 0.1447 29 1 1.7996 1.9129 -0.9535 30 1 1.5632 1.9965 0.8088 31 1 0.3968 -2.0264 1.1987 32 1 1.7685 -2.5084 2.2255 33 1 0.7224 -5.7209 0.8648 34 1 -0.2959 -0.5253 2.3140 35 1 0.7451 -1.5448 3.3247 36 1 0.1722 1.3316 4.1127 37 1 -0.9727 0.0263 4.5123 38 1 0.3413 -0.1481 6.3569 39 1 1.3119 -1.1560 5.2692 40 1 1.8008 1.6975 6.1564 41 1 2.8841 0.3002 6.2635 42 1 2.2026 1.9931 3.8473 43 1 3.7968 1.6013 4.5175 44 1 3.4632 -1.9174 3.5848 45 1 3.3592 -1.0755 5.0153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250481778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:23 Heat of formation + Delta-G solvation = -3.567760 kcal Electronic energy + Delta-G solvation = -21333.865225 eV Core-core repulsion = 18578.784732 eV Total energy + Delta-G solvation = -2755.080492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29660 -38.12079 -34.78470 -34.09993 -33.22165 -31.14380 -30.36551 -28.34620 -27.70025 -25.19915 -24.75830 -23.64189 -21.21083 -20.08041 -19.44579 -18.12965 -17.41542 -17.15867 -16.47611 -16.11728 -15.61300 -15.37612 -14.97581 -14.58600 -14.39012 -14.15533 -13.86632 -13.59218 -13.15232 -13.08862 -13.00912 -12.87297 -12.73294 -12.55198 -12.31685 -12.27476 -11.88983 -11.79711 -11.57123 -11.53315 -11.27084 -11.21335 -11.00969 -10.85309 -10.69177 -10.40208 -9.11790 -8.61294 -8.08620 -6.15880 1.40534 1.42251 1.49929 2.44714 3.22376 3.45445 3.80148 3.98973 4.11108 4.15094 4.27355 4.37565 4.39588 4.45642 4.54801 4.59097 4.67140 4.75986 4.78842 4.81805 4.88881 4.98179 5.05525 5.12190 5.16043 5.18945 5.31280 5.41445 5.42664 5.45507 5.51058 5.52759 5.61629 5.63529 5.70756 5.77384 5.84632 5.97552 6.26376 6.48190 6.70589 6.85186 6.99426 7.04784 7.52173 9.00228 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.007424 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.247569 B = 3770.680174 C = 4254.471787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 C -0.133 4.133 4 N -0.534 5.534 5 C 0.213 3.787 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.955 3.045 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.093 3.907 15 H 0.073 0.927 16 C -0.130 4.130 17 C -0.100 4.100 18 C -0.124 4.124 19 C -0.098 4.098 20 C -0.117 4.117 21 C 0.114 3.886 22 H 0.033 0.967 23 N -0.834 5.834 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.062 0.938 31 H -0.030 1.030 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.331 0.669 45 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 13.636 6.799 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.032 4.032 3 C -0.190 4.190 4 N -0.257 5.257 5 C 0.086 3.914 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.199 1.199 14 C -0.016 4.016 15 H 0.091 0.909 16 C -0.168 4.168 17 C -0.139 4.139 18 C -0.162 4.162 19 C -0.135 4.135 20 C -0.155 4.155 21 C 0.002 3.998 22 H 0.052 0.948 23 N -0.365 5.365 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.080 0.920 31 H -0.013 1.013 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.143 0.857 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.003 13.459 6.736 15.183 hybrid contribution 0.124 -1.047 -0.909 1.393 sum 2.127 12.411 5.826 13.875 Atomic orbital electron populations 1.22413 0.98579 1.00631 1.01492 1.21607 0.92218 0.95097 0.94272 1.21874 1.01264 0.93915 1.01951 1.62516 1.59039 1.02813 1.01369 1.19431 0.91401 0.84658 0.95863 1.21565 1.28534 0.94490 1.11060 0.93185 1.25722 0.95862 0.99086 0.98590 1.70083 1.37841 1.12298 1.36816 0.85668 0.78845 0.77557 0.79862 1.19678 1.21131 1.19932 1.20768 0.93987 0.96887 0.89938 0.90877 1.21044 0.96975 1.01677 0.97133 1.21149 0.98236 0.99329 0.95152 1.21494 0.96037 1.02237 0.96397 1.21653 0.96930 0.98976 0.95984 1.21524 1.01088 0.97064 0.95865 1.20986 0.95879 0.89488 0.93417 0.94843 1.59032 1.62044 1.08858 1.06607 0.92479 0.91946 0.94892 0.92714 0.92353 0.91303 0.91956 1.01251 0.95560 0.93204 0.95473 0.92042 0.91933 0.93412 0.93445 0.89900 0.91799 0.91806 0.91538 0.91249 0.85705 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.46 7.68 71.98 0.55 -5.90 16 2 C 0.08 2.94 2.79 44.92 0.13 3.07 16 3 C -0.13 -3.83 8.70 71.98 0.63 -3.20 16 4 N -0.53 -22.29 4.37 -861.34 -3.77 -26.06 16 5 C 0.21 11.01 3.12 85.56 0.27 11.28 16 6 C -0.52 -29.50 8.62 25.60 0.22 -29.28 16 7 H 0.05 2.85 7.01 -2.91 -0.02 2.83 16 8 C 0.01 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 10 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.09 3.18 0.97 43.06 0.04 3.23 16 15 H 0.07 2.30 4.26 -2.39 -0.01 2.29 16 16 C -0.13 -4.78 3.21 28.74 0.09 -4.69 16 17 C -0.10 -2.90 5.61 30.20 0.17 -2.74 16 18 C -0.12 -3.23 5.26 30.14 0.16 -3.07 16 19 C -0.10 -2.04 5.13 31.32 0.16 -1.88 16 20 C -0.12 -2.64 5.15 30.16 0.16 -2.48 16 21 C 0.11 3.41 3.29 44.55 0.15 3.55 16 22 H 0.03 1.09 8.13 -2.39 -0.02 1.07 16 23 N -0.83 -25.64 4.85 -170.22 -0.83 -26.47 16 24 H 0.06 1.96 6.26 -2.39 -0.01 1.95 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.03 1.49 5.87 -2.38 -0.01 1.47 16 27 H 0.05 2.38 6.92 -2.39 -0.02 2.36 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.63 6.09 -2.38 -0.01 1.62 16 31 H -0.03 -1.71 4.64 -2.39 -0.01 -1.72 16 32 H 0.03 1.48 5.77 -2.39 -0.01 1.46 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.03 1.09 4.85 -2.39 -0.01 1.08 16 35 H 0.06 2.71 4.63 -2.39 -0.01 2.70 16 36 H 0.06 1.61 6.98 -2.38 -0.02 1.60 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 2.56 5.07 -2.39 -0.01 2.55 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.20 7.20 -2.39 -0.02 1.18 16 42 H 0.07 1.46 6.63 -2.39 -0.02 1.44 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.33 11.75 8.66 -89.69 -0.78 10.97 16 45 H 0.34 8.56 6.69 -89.70 -0.60 7.96 16 Total: -1.00 -62.25 309.33 0.51 -61.74 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.38 Total: 30.92 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 3.18 Total: -31.35 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.31 Total: -108.72 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -62.25 0.51 -61.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250481778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.171 kcal (2) G-P(sol) polarization free energy of solvation -62.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds