Wall clock time and date at job start Mon Mar 30 2020 06:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 H 1.09009 * 109.47120 * 305.00023 * 3 2 1 5 5 C 1.52997 * 109.47068 * 185.00400 * 3 2 1 6 6 N 1.46901 * 109.47315 * 65.00297 * 3 2 1 7 7 C 1.46957 * 111.01647 * 56.18800 * 6 3 2 8 8 C 1.53046 * 109.38065 * 183.16878 * 7 6 3 9 9 H 1.09002 * 109.50978 * 61.58623 * 8 7 6 10 10 C 1.50696 * 109.48906 * 181.63925 * 8 7 6 11 11 H 1.08004 * 119.99902 * 119.88858 * 10 8 7 12 12 C 1.37881 * 120.00447 * 299.89282 * 10 8 7 13 13 N 1.31514 * 120.00088 * 179.97438 * 12 10 8 14 14 Si 1.86799 * 119.99524 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.47085 * 90.00398 * 14 12 10 16 16 H 1.48506 * 109.46777 * 210.00011 * 14 12 10 17 17 H 1.48495 * 109.47176 * 330.00066 * 14 12 10 18 18 N 1.46955 * 109.36741 * 301.60834 * 8 7 6 19 19 C 1.46896 * 111.00423 * 183.19025 * 18 8 7 20 20 C 1.46955 * 110.87760 * 59.31843 * 18 8 7 21 21 C 1.53006 * 109.48788 * 180.71385 * 20 18 8 22 22 C 1.52999 * 109.48986 * 60.65171 * 20 18 8 23 23 C 1.46956 * 110.99929 * 180.02562 * 6 3 2 24 24 H 1.09000 * 109.47260 * 59.99603 * 1 2 3 25 25 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46718 * 299.99607 * 1 2 3 27 27 H 1.09005 * 109.46718 * 240.00393 * 2 1 3 28 28 H 1.09000 * 109.47259 * 119.99840 * 2 1 3 29 29 H 1.08999 * 109.47384 * 299.99784 * 5 3 2 30 30 H 1.09007 * 109.47209 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.47135 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47347 * 63.19745 * 7 6 3 33 33 H 1.09007 * 109.48682 * 303.14394 * 7 6 3 34 34 H 0.96996 * 119.99846 * 180.02562 * 13 12 10 35 35 H 1.09008 * 109.47123 * 296.19879 * 19 18 8 36 36 H 1.08999 * 109.47347 * 56.20013 * 19 18 8 37 37 H 1.09002 * 109.47073 * 176.20254 * 19 18 8 38 38 H 1.09006 * 109.46757 * 179.89541 * 21 20 18 39 39 H 1.08997 * 109.46842 * 299.89026 * 21 20 18 40 40 H 1.09000 * 109.46825 * 59.89430 * 21 20 18 41 41 H 1.09004 * 109.46824 * 300.10893 * 22 20 18 42 42 H 1.09008 * 109.47216 * 60.10381 * 22 20 18 43 43 H 1.09000 * 109.47770 * 180.10435 * 22 20 18 44 44 H 1.09002 * 109.49189 * 56.84312 * 23 6 3 45 45 H 1.09002 * 109.48707 * 296.80070 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 1.6514 2.0993 1.2552 7 6 2.1447 1.3479 2.4179 8 6 1.6532 2.0194 3.7023 9 1 0.5636 2.0063 3.7260 10 6 2.1909 1.2742 4.8967 11 1 2.8221 1.7823 5.6108 12 6 1.8772 -0.0561 5.0779 13 7 2.3469 -0.7065 6.1200 14 14 0.7851 -0.9346 3.8430 15 1 1.6267 -1.5348 2.7768 16 1 0.0209 -2.0054 4.5320 17 1 -0.1605 0.0379 3.2387 18 7 2.1277 3.4098 3.7376 19 6 1.7396 4.0669 4.9928 20 6 1.6340 4.1613 2.5752 21 6 2.1603 5.5968 2.6344 22 6 0.1042 4.1771 2.5898 23 6 2.1250 3.4900 1.2905 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.9995 0.9054 0.7159 30 1 3.8531 0.9570 -1.0573 31 1 3.9281 2.4720 -0.1254 32 1 3.2346 1.3366 2.4075 33 1 1.7697 0.3252 2.3757 34 1 2.1265 -1.6425 6.2472 35 1 0.6527 4.1262 5.0509 36 1 2.1176 3.4900 5.8369 37 1 2.1604 5.0720 5.0220 38 1 1.7955 6.1534 1.7711 39 1 1.8101 6.0747 3.5493 40 1 3.2502 5.5848 2.6250 41 1 -0.2701 3.1542 2.5487 42 1 -0.2456 4.6554 3.5048 43 1 -0.2618 4.7330 1.7266 44 1 1.7356 4.0288 0.4266 45 1 3.2146 3.5038 1.2668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251535190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:21 Heat of formation + Delta-G solvation = -0.112727 kcal Electronic energy + Delta-G solvation = -21650.672805 eV Core-core repulsion = 18895.742134 eV Total energy + Delta-G solvation = -2754.930671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24418 -38.24097 -35.50807 -33.75658 -33.36099 -31.03092 -29.34491 -28.13988 -27.38287 -26.89275 -24.97600 -23.63322 -22.70916 -20.46546 -19.08733 -18.91677 -17.62015 -16.80600 -16.26928 -15.80317 -15.78773 -15.30071 -15.05811 -14.76330 -14.69282 -14.30570 -14.12406 -13.81664 -13.56799 -13.21599 -13.17401 -12.85143 -12.66802 -12.63802 -12.52573 -12.22338 -12.18296 -12.14912 -11.95171 -11.91501 -11.83182 -11.44898 -11.41714 -10.98683 -10.96509 -10.68770 -9.11740 -8.85410 -8.32202 -6.34525 1.22185 1.29972 1.41334 2.26251 2.94793 3.12509 3.25465 3.82204 3.93050 4.14272 4.19899 4.26497 4.30316 4.41973 4.46002 4.52161 4.55659 4.66523 4.69950 4.73220 4.79728 4.83111 4.86711 4.90146 4.94660 4.97090 5.06264 5.09444 5.10173 5.17819 5.19334 5.25286 5.28512 5.38626 5.41316 5.46015 5.55328 5.68126 6.03034 6.20040 6.25819 6.51239 6.72964 6.79568 7.30326 8.83463 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.013160 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.658921 B = 2127.132587 C = 3326.324430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.079 3.921 4 H 0.105 0.895 5 C -0.181 4.181 6 N -0.536 5.536 7 C 0.067 3.933 8 C 0.198 3.802 9 H -0.005 1.005 10 C -0.506 4.506 11 H 0.044 0.956 12 C 0.018 3.982 13 N -0.944 5.944 14 Si 0.933 3.067 15 H -0.263 1.263 16 H -0.300 1.300 17 H -0.247 1.247 18 N -0.534 5.534 19 C 0.038 3.962 20 C 0.094 3.906 21 C -0.129 4.129 22 C -0.161 4.161 23 C 0.072 3.928 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.017 0.983 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 8.670 -15.283 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.029 4.029 4 H 0.122 0.878 5 C -0.240 4.240 6 N -0.259 5.259 7 C -0.061 4.061 8 C 0.090 3.910 9 H 0.012 0.988 10 C -0.545 4.545 11 H 0.063 0.937 12 C -0.179 4.179 13 N -0.584 5.584 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.228 1.228 17 H -0.171 1.171 18 N -0.258 5.258 19 C -0.110 4.110 20 C 0.005 3.995 21 C -0.187 4.187 22 C -0.220 4.220 23 C -0.056 4.056 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.965 8.518 -15.204 17.677 hybrid contribution -0.164 -1.134 0.491 1.246 sum -3.129 7.384 -14.712 16.756 Atomic orbital electron populations 1.21676 0.95111 1.00998 1.02273 1.21773 0.97132 0.96088 1.01597 1.21854 0.93639 0.95040 0.92381 0.87751 1.22415 0.97361 1.02245 1.01971 1.62440 1.59198 1.02551 1.01749 1.22385 0.96664 0.96657 0.90433 1.19440 0.92752 0.86653 0.92172 0.98768 1.21279 1.30092 0.95399 1.07694 0.93737 1.25673 0.97054 0.98202 0.97005 1.70016 1.47187 1.10681 1.30559 0.86139 0.80179 0.78551 0.79066 1.18920 1.22802 1.17134 1.62220 1.59395 1.01972 1.02223 1.22233 0.97579 0.98793 0.92418 1.21330 0.93230 0.94491 0.90489 1.21801 1.01166 0.93009 1.02695 1.22237 0.96674 1.01487 1.01552 1.22181 0.97709 0.88427 0.97240 0.90671 0.93224 0.94174 0.89442 0.94803 0.94924 0.90287 0.91799 0.96259 0.92575 0.92578 0.96458 0.93627 0.90167 0.90033 0.92169 0.92565 0.93908 0.93563 0.90631 0.88339 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.80 71.98 0.71 -3.30 16 2 C -0.13 -3.73 5.10 30.60 0.16 -3.57 16 3 C 0.08 2.19 2.43 44.91 0.11 2.30 16 4 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 5 C -0.18 -4.81 8.50 71.98 0.61 -4.20 16 6 N -0.54 -18.30 3.51 -870.48 -3.05 -21.35 16 7 C 0.07 2.91 3.59 86.31 0.31 3.22 16 8 C 0.20 9.56 1.15 44.17 0.05 9.61 16 9 H -0.01 -0.26 5.40 -2.39 -0.01 -0.27 16 10 C -0.51 -29.42 8.46 25.60 0.22 -29.20 16 11 H 0.04 2.87 6.71 -2.91 -0.02 2.85 16 12 C 0.02 1.09 5.45 84.66 0.46 1.55 16 13 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 14 Si 0.93 46.33 24.27 68.60 1.67 47.99 16 15 H -0.26 -12.39 6.18 99.48 0.61 -11.78 16 16 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 17 H -0.25 -11.79 6.53 99.48 0.65 -11.14 16 18 N -0.53 -22.10 4.54 -851.43 -3.87 -25.97 16 19 C 0.04 1.49 8.54 127.69 1.09 2.58 16 20 C 0.09 3.02 0.68 3.53 0.00 3.02 16 21 C -0.13 -3.19 8.14 71.98 0.59 -2.61 16 22 C -0.16 -4.99 7.65 71.98 0.55 -4.44 16 23 C 0.07 2.17 3.84 86.31 0.33 2.50 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.35 7.75 -2.38 -0.02 1.33 16 27 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.03 1.22 5.19 -2.39 -0.01 1.20 16 29 H 0.03 1.05 6.56 -2.39 -0.02 1.03 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 1.60 6.47 -2.39 -0.02 1.58 16 32 H 0.02 0.91 6.56 -2.39 -0.02 0.90 16 33 H 0.06 2.58 1.27 -2.38 0.00 2.58 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.02 0.66 6.39 -2.38 -0.02 0.64 16 36 H 0.04 2.09 6.16 -2.39 -0.01 2.08 16 37 H 0.08 2.61 6.25 -2.39 -0.01 2.60 16 38 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.06 1.46 6.36 -2.39 -0.02 1.44 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.58 5.94 -2.38 -0.01 1.57 16 42 H 0.05 1.42 6.48 -2.38 -0.02 1.41 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.03 1.09 6.48 -2.39 -0.02 1.08 16 Total: -1.00 -66.35 311.01 1.03 -65.31 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.81 Total: 16.06 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 5.18 Total: -22.54 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -6.62 Total: -106.82 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 47.99 kcal Total: -66.35 1.03 -65.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251535190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.199 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds