Wall clock time and date at job start Mon Mar 30 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.53000 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47245 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47237 * 179.97438 * 5 4 3 7 7 C 1.46843 * 110.99993 * 66.04549 * 6 5 4 8 8 C 1.53034 * 109.52613 * 174.16292 * 7 6 5 9 9 C 1.53114 * 109.27959 * 59.17544 * 8 7 6 10 10 C 1.53117 * 109.16268 * 302.35123 * 9 8 7 11 11 H 1.08996 * 109.50463 * 297.70570 * 10 9 8 12 12 N 1.46501 * 109.50109 * 177.59460 * 10 9 8 13 13 C 1.46501 * 120.00125 * 299.99402 * 12 10 9 14 14 C 1.36937 * 120.00289 * 120.00300 * 12 10 9 15 15 H 1.08006 * 119.99838 * 22.03890 * 14 12 10 16 16 C 1.38810 * 119.99930 * 202.04376 * 14 12 10 17 17 N 1.31617 * 120.00284 * 12.46839 * 16 14 12 18 18 Si 1.86805 * 119.99832 * 192.46640 * 16 14 12 19 19 H 1.48497 * 109.46949 * 59.99713 * 18 16 14 20 20 H 1.48491 * 109.47079 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46958 * 300.00087 * 18 16 14 22 22 C 1.46848 * 110.99986 * 301.83489 * 6 5 4 23 23 H 1.09002 * 109.46441 * 299.99883 * 1 2 3 24 24 H 1.08996 * 109.46991 * 59.99197 * 1 2 3 25 25 H 1.08996 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46441 * 240.00117 * 2 1 3 27 27 H 1.08996 * 109.46991 * 120.00803 * 2 1 3 28 28 H 1.09003 * 109.47053 * 60.00076 * 3 2 1 29 29 H 1.09006 * 109.47172 * 300.00299 * 3 2 1 30 30 H 1.09002 * 109.46892 * 59.99936 * 4 3 2 31 31 H 1.09000 * 109.46482 * 300.00069 * 4 3 2 32 32 H 1.09003 * 109.47053 * 59.99618 * 5 4 3 33 33 H 1.08999 * 109.46805 * 299.99893 * 5 4 3 34 34 H 1.09000 * 109.46256 * 54.14259 * 7 6 5 35 35 H 1.09001 * 109.46208 * 294.17981 * 7 6 5 36 36 H 1.08996 * 109.50389 * 179.12135 * 8 7 6 37 37 H 1.09007 * 109.50171 * 299.19796 * 8 7 6 38 38 H 1.09007 * 109.52258 * 62.25569 * 9 8 7 39 39 H 1.09002 * 109.52542 * 182.44147 * 9 8 7 40 40 H 1.09000 * 109.46827 * 94.32005 * 13 12 10 41 41 H 1.08997 * 109.47525 * 214.32307 * 13 12 10 42 42 H 1.09000 * 109.47011 * 334.32660 * 13 12 10 43 43 H 0.97001 * 120.00256 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.45748 * 65.82388 * 22 6 5 45 45 H 1.08996 * 109.45294 * 305.85320 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 -0.0013 6 7 5.5492 2.8848 -0.0013 7 6 6.0754 2.3276 -1.2539 8 6 7.5983 2.4765 -1.2800 9 6 8.1989 1.7397 -0.0797 10 6 7.5983 2.3061 1.2098 11 1 7.8616 3.3598 1.3017 12 7 8.1249 1.5676 2.3603 13 6 7.8993 0.1242 2.4697 14 6 8.8278 2.2264 3.3334 15 1 8.7038 3.2916 3.4617 16 6 9.6997 1.5252 4.1549 17 7 10.0400 0.2905 3.8518 18 14 10.3903 2.3342 5.6906 19 1 9.2747 2.7152 6.5936 20 1 11.2904 1.3821 6.3894 21 1 11.1551 3.5486 5.3091 22 6 6.0754 2.1622 1.1637 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9337 0.9284 0.8891 32 1 3.7172 3.3990 0.8887 33 1 3.7165 3.3984 -0.8913 34 1 5.6436 2.8632 -2.0993 35 1 5.8125 1.2719 -1.3204 36 1 7.9900 2.0488 -2.2028 37 1 7.8615 3.5330 -1.2281 38 1 7.9688 0.6766 -0.1524 39 1 9.2799 1.8794 -0.0701 40 1 8.7533 -0.4096 2.0528 41 1 7.7786 -0.1462 3.5187 42 1 6.9982 -0.1455 1.9190 43 1 10.6497 -0.1994 4.4257 44 1 5.8125 1.1072 1.0858 45 1 5.6435 2.5777 2.0741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259317501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:19 Heat of formation + Delta-G solvation = 1.034985 kcal Electronic energy + Delta-G solvation = -19906.005166 eV Core-core repulsion = 17151.124264 eV Total energy + Delta-G solvation = -2754.880902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.05575 -36.27517 -34.98238 -33.00098 -31.21436 -30.08642 -28.44707 -25.96352 -25.91809 -23.44755 -23.30045 -21.55489 -21.18675 -20.34264 -18.41288 -16.66162 -15.82940 -15.62447 -14.78924 -14.60115 -14.33557 -13.92334 -13.78231 -13.68231 -13.10246 -12.86723 -12.72243 -12.46884 -12.25750 -11.88651 -11.71888 -11.57078 -11.07852 -11.03864 -10.98386 -10.87346 -10.77396 -10.74170 -10.48845 -10.29041 -10.23999 -10.10386 -9.78217 -9.73229 -9.50266 -8.47779 -7.87317 -6.68316 -5.65313 -3.10128 3.43437 3.48279 3.49592 4.23142 4.58460 4.69360 4.80323 4.99783 5.10683 5.26254 5.31722 5.41753 5.47678 5.50713 5.54371 5.62091 5.65580 5.73468 5.79002 5.82996 5.86809 5.89016 5.92700 6.04670 6.10420 6.13638 6.25666 6.29594 6.34289 6.37818 6.42998 6.59649 6.64944 6.82634 7.08652 7.13125 7.44625 7.48006 7.51384 7.79582 7.87503 8.47816 9.31501 9.95603 10.44479 11.39849 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.004852 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.741766 B = 5769.872558 C = 6374.423542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.160 4.160 5 C 0.057 3.943 6 N -0.536 5.536 7 C 0.058 3.942 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.183 3.817 11 H 0.068 0.932 12 N -0.596 5.596 13 C 0.165 3.835 14 C -0.251 4.251 15 H 0.068 0.932 16 C 0.000 4.000 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.044 3.956 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.041 0.959 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.032 0.968 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 1.391 -10.096 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.199 4.199 5 C -0.071 4.071 6 N -0.259 5.259 7 C -0.070 4.070 8 C -0.153 4.153 9 C -0.171 4.171 10 C 0.074 3.926 11 H 0.086 0.914 12 N -0.318 5.318 13 C 0.021 3.979 14 C -0.381 4.381 15 H 0.086 0.914 16 C -0.197 4.197 17 N -0.556 5.556 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.210 1.210 22 C -0.085 4.085 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.974 1.755 -9.935 17.235 hybrid contribution 0.172 -0.639 0.792 1.032 sum -13.802 1.116 -9.143 16.594 Atomic orbital electron populations 1.21776 0.96109 1.01392 1.01643 1.21549 0.95585 0.97239 1.02029 1.21528 0.95369 0.96523 1.01778 1.22300 0.95678 0.99477 1.02482 1.22189 0.87894 0.94939 1.02093 1.62153 1.06059 1.54877 1.02811 1.22048 0.95931 0.97155 0.91870 1.21581 0.94097 1.01326 0.98313 1.22135 1.00611 0.99184 0.95190 1.20276 0.89581 0.96200 0.86535 0.91397 1.43929 1.62204 1.04532 1.21130 1.20729 0.94520 0.83758 0.98929 1.19219 1.17301 0.93027 1.08546 0.91400 1.24984 0.97704 0.96803 1.00259 1.70067 1.36762 1.10816 1.37923 0.86338 0.78558 0.78334 0.83338 1.21157 1.21729 1.20979 1.22729 0.98367 0.95644 0.91770 0.92795 0.92922 0.92967 0.92264 0.92006 0.92033 0.92278 0.92124 0.91410 0.91005 0.91402 0.91779 0.95242 0.92500 0.91554 0.93108 0.91973 0.95472 0.94010 0.98683 0.93840 0.94945 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.11 -1.14 5.21 -26.73 -0.14 -1.27 16 4 C -0.16 -1.92 4.52 -26.73 -0.12 -2.04 16 5 C 0.06 0.73 5.36 -3.83 -0.02 0.71 16 6 N -0.54 -8.30 4.86 -234.68 -1.14 -9.44 16 7 C 0.06 0.83 5.05 -3.84 -0.02 0.81 16 8 C -0.11 -1.75 6.09 -26.65 -0.16 -1.92 16 9 C -0.13 -2.52 5.32 -26.61 -0.14 -2.66 16 10 C 0.18 3.89 2.75 -67.85 -0.19 3.70 16 11 H 0.07 1.52 7.86 -51.93 -0.41 1.11 16 12 N -0.60 -15.23 2.82 -173.40 -0.49 -15.72 16 13 C 0.17 4.17 7.96 59.85 0.48 4.64 16 14 C -0.25 -7.04 9.60 -15.06 -0.14 -7.19 16 15 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 16 C 0.00 0.01 5.11 -17.43 -0.09 -0.08 16 17 N -0.91 -26.95 10.63 55.49 0.59 -26.36 16 18 Si 0.90 22.21 29.57 -169.99 -5.03 17.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.04 0.81 4.12 -3.84 -0.02 0.79 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.74 6.68 -51.93 -0.35 0.40 16 31 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.03 0.43 6.76 -51.93 -0.35 0.08 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.05 1.00 7.60 -51.93 -0.39 0.61 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.03 0.74 7.41 -51.93 -0.38 0.35 16 41 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 42 H -0.01 -0.12 6.41 -51.93 -0.33 -0.45 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 44 H 0.03 0.61 5.09 -51.93 -0.26 0.35 16 45 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -29.06 337.59 -9.98 -39.04 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.65 Total: -3.04 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.35 Total: -6.76 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -1.04 Total: -51.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.06 -9.98 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.076 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds