Wall clock time and date at job start Mon Mar 30 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.53000 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47245 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47237 * 179.97438 * 5 4 3 7 7 C 1.46843 * 110.99993 * 66.04549 * 6 5 4 8 8 C 1.53034 * 109.52613 * 174.16292 * 7 6 5 9 9 C 1.53114 * 109.27959 * 59.17544 * 8 7 6 10 10 C 1.53117 * 109.16268 * 302.35123 * 9 8 7 11 11 H 1.08996 * 109.50463 * 297.70570 * 10 9 8 12 12 N 1.46501 * 109.50109 * 177.59460 * 10 9 8 13 13 C 1.46501 * 120.00125 * 299.99402 * 12 10 9 14 14 C 1.36937 * 120.00289 * 120.00300 * 12 10 9 15 15 H 1.08006 * 119.99838 * 22.03890 * 14 12 10 16 16 C 1.38810 * 119.99930 * 202.04376 * 14 12 10 17 17 N 1.31617 * 120.00284 * 12.46839 * 16 14 12 18 18 Si 1.86805 * 119.99832 * 192.46640 * 16 14 12 19 19 H 1.48497 * 109.46949 * 59.99713 * 18 16 14 20 20 H 1.48491 * 109.47079 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46958 * 300.00087 * 18 16 14 22 22 C 1.46848 * 110.99986 * 301.83489 * 6 5 4 23 23 H 1.09002 * 109.46441 * 299.99883 * 1 2 3 24 24 H 1.08996 * 109.46991 * 59.99197 * 1 2 3 25 25 H 1.08996 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46441 * 240.00117 * 2 1 3 27 27 H 1.08996 * 109.46991 * 120.00803 * 2 1 3 28 28 H 1.09003 * 109.47053 * 60.00076 * 3 2 1 29 29 H 1.09006 * 109.47172 * 300.00299 * 3 2 1 30 30 H 1.09002 * 109.46892 * 59.99936 * 4 3 2 31 31 H 1.09000 * 109.46482 * 300.00069 * 4 3 2 32 32 H 1.09003 * 109.47053 * 59.99618 * 5 4 3 33 33 H 1.08999 * 109.46805 * 299.99893 * 5 4 3 34 34 H 1.09000 * 109.46256 * 54.14259 * 7 6 5 35 35 H 1.09001 * 109.46208 * 294.17981 * 7 6 5 36 36 H 1.08996 * 109.50389 * 179.12135 * 8 7 6 37 37 H 1.09007 * 109.50171 * 299.19796 * 8 7 6 38 38 H 1.09007 * 109.52258 * 62.25569 * 9 8 7 39 39 H 1.09002 * 109.52542 * 182.44147 * 9 8 7 40 40 H 1.09000 * 109.46827 * 94.32005 * 13 12 10 41 41 H 1.08997 * 109.47525 * 214.32307 * 13 12 10 42 42 H 1.09000 * 109.47011 * 334.32660 * 13 12 10 43 43 H 0.97001 * 120.00256 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.45748 * 65.82388 * 22 6 5 45 45 H 1.08996 * 109.45294 * 305.85320 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 -0.0013 6 7 5.5492 2.8848 -0.0013 7 6 6.0754 2.3276 -1.2539 8 6 7.5983 2.4765 -1.2800 9 6 8.1989 1.7397 -0.0797 10 6 7.5983 2.3061 1.2098 11 1 7.8616 3.3598 1.3017 12 7 8.1249 1.5676 2.3603 13 6 7.8993 0.1242 2.4697 14 6 8.8278 2.2264 3.3334 15 1 8.7038 3.2916 3.4617 16 6 9.6997 1.5252 4.1549 17 7 10.0400 0.2905 3.8518 18 14 10.3903 2.3342 5.6906 19 1 9.2747 2.7152 6.5936 20 1 11.2904 1.3821 6.3894 21 1 11.1551 3.5486 5.3091 22 6 6.0754 2.1622 1.1637 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9337 0.9284 0.8891 32 1 3.7172 3.3990 0.8887 33 1 3.7165 3.3984 -0.8913 34 1 5.6436 2.8632 -2.0993 35 1 5.8125 1.2719 -1.3204 36 1 7.9900 2.0488 -2.2028 37 1 7.8615 3.5330 -1.2281 38 1 7.9688 0.6766 -0.1524 39 1 9.2799 1.8794 -0.0701 40 1 8.7533 -0.4096 2.0528 41 1 7.7786 -0.1462 3.5187 42 1 6.9982 -0.1455 1.9190 43 1 10.6497 -0.1994 4.4257 44 1 5.8125 1.1072 1.0858 45 1 5.6435 2.5777 2.0741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259317501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:18 Heat of formation + Delta-G solvation = -15.273987 kcal Electronic energy + Delta-G solvation = -19906.712376 eV Core-core repulsion = 17151.124264 eV Total energy + Delta-G solvation = -2755.588112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41492 -37.64966 -36.34091 -34.37964 -33.04749 -31.11081 -30.14324 -28.05437 -26.98770 -25.18970 -24.49775 -22.90942 -21.97828 -21.79300 -19.91123 -18.74362 -17.22977 -16.70375 -16.47952 -15.92550 -15.65343 -15.36414 -15.07408 -14.83951 -14.58299 -14.37591 -14.07867 -13.81349 -13.53504 -13.35734 -12.91665 -12.80222 -12.68924 -12.56340 -12.46096 -12.28519 -12.09446 -11.98270 -11.94593 -11.83554 -11.61167 -11.52471 -11.31256 -11.25479 -11.16917 -10.61087 -9.12820 -8.76267 -7.81824 -5.29309 1.46136 1.48723 1.55404 2.50002 3.02369 3.31462 3.71687 3.84391 3.96930 4.06325 4.09772 4.22000 4.22464 4.25264 4.44543 4.49171 4.54424 4.64977 4.68330 4.74986 4.77998 4.82813 4.87936 4.92333 4.98616 5.01771 5.05073 5.10221 5.17953 5.18374 5.22621 5.27025 5.34792 5.43061 5.49423 5.51268 5.54233 5.64251 5.69584 6.15865 6.29899 6.36132 7.16095 7.88983 8.32819 9.21630 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.004852 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.741766 B = 5769.872558 C = 6374.423542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.108 4.108 4 C -0.153 4.153 5 C 0.058 3.942 6 N -0.543 5.543 7 C 0.059 3.941 8 C -0.107 4.107 9 C -0.123 4.123 10 C 0.177 3.823 11 H 0.053 0.947 12 N -0.612 5.612 13 C 0.186 3.814 14 C -0.264 4.264 15 H 0.068 0.932 16 C -0.053 4.053 17 N -0.940 5.940 18 Si 0.970 3.030 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.275 1.275 22 C 0.064 3.936 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.001 0.999 41 H 0.014 0.986 42 H 0.022 0.978 43 H 0.247 0.753 44 H 0.026 0.974 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 2.457 -11.493 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.192 4.192 5 C -0.069 4.069 6 N -0.266 5.266 7 C -0.068 4.068 8 C -0.145 4.145 9 C -0.163 4.163 10 C 0.070 3.930 11 H 0.071 0.929 12 N -0.335 5.335 13 C 0.041 3.959 14 C -0.395 4.395 15 H 0.086 0.914 16 C -0.248 4.248 17 N -0.587 5.587 18 Si 0.798 3.202 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.201 1.201 22 C -0.065 4.065 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.594 2.847 -11.363 19.503 hybrid contribution 0.633 -0.940 1.168 1.628 sum -14.961 1.907 -10.194 18.204 Atomic orbital electron populations 1.21758 0.94944 1.01894 1.02122 1.21551 0.96636 0.96894 1.01474 1.21487 0.93728 0.96915 1.02498 1.22203 0.97138 0.98588 1.01267 1.22268 0.85893 0.95593 1.03190 1.62121 1.07966 1.54311 1.02216 1.22113 0.94973 0.97711 0.92030 1.21542 0.94934 1.00819 0.97188 1.21980 0.99162 0.99095 0.96072 1.20444 0.91550 0.94867 0.86116 0.92898 1.44153 1.62333 1.04685 1.22311 1.20394 0.94522 0.83730 0.97275 1.19549 1.17249 0.93297 1.09360 0.91374 1.25760 0.98384 0.97465 1.03150 1.70237 1.37504 1.12127 1.38849 0.85304 0.77829 0.77438 0.79662 1.20472 1.21958 1.20118 1.22304 0.95894 0.95500 0.92827 0.92726 0.92018 0.92529 0.92181 0.93273 0.92054 0.90742 0.92067 0.93859 0.91256 0.88957 0.88686 0.95151 0.90008 0.91448 0.93940 0.94459 0.98114 0.96695 0.95965 0.94335 0.95562 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.24 5.93 30.60 0.18 -2.06 16 3 C -0.11 -1.91 5.21 30.59 0.16 -1.75 16 4 C -0.15 -3.38 4.52 30.59 0.14 -3.24 16 5 C 0.06 1.34 5.36 86.30 0.46 1.80 16 6 N -0.54 -15.71 4.86 -896.39 -4.35 -20.07 16 7 C 0.06 1.51 5.05 86.33 0.44 1.94 16 8 C -0.11 -3.02 6.09 30.64 0.19 -2.83 16 9 C -0.12 -4.72 5.32 30.67 0.16 -4.56 16 10 C 0.18 7.61 2.75 45.04 0.12 7.74 16 11 H 0.05 2.40 7.86 -2.39 -0.02 2.38 16 12 N -0.61 -32.05 2.82 -702.50 -1.98 -34.03 16 13 C 0.19 9.65 7.96 127.77 1.02 10.67 16 14 C -0.26 -15.12 9.60 84.03 0.81 -14.31 16 15 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 16 C -0.05 -3.05 5.11 84.86 0.43 -2.62 16 17 N -0.94 -57.20 10.63 21.65 0.23 -56.97 16 18 Si 0.97 46.28 29.57 68.60 2.03 48.30 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 C 0.06 2.34 4.12 86.32 0.36 2.70 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.35 6.68 -2.39 -0.02 1.33 16 31 H 0.04 1.17 6.51 -2.39 -0.02 1.15 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 34 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.03 0.79 6.76 -2.39 -0.02 0.77 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.04 1.67 7.60 -2.38 -0.02 1.65 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.00 0.03 7.41 -2.39 -0.02 0.02 16 41 H 0.01 0.81 7.21 -2.39 -0.02 0.80 16 42 H 0.02 1.00 6.41 -2.39 -0.02 0.99 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.03 0.98 5.09 -2.38 -0.01 0.97 16 45 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 Total: -1.00 -63.43 337.59 2.01 -61.41 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.91 Total: 9.32 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.18 Total: -7.97 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -6.10 Total: -111.07 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -63.43 2.01 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.140 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds