Wall clock time and date at job start Mon Mar 30 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08991 * 109.45479 * 301.74123 * 3 2 1 5 5 C 1.53040 * 109.46481 * 61.71852 * 3 2 1 6 6 C 1.53121 * 109.27765 * 179.19427 * 5 3 2 7 7 C 1.53119 * 109.15826 * 302.34120 * 6 5 3 8 8 C 1.53044 * 109.27854 * 57.65743 * 7 6 5 9 9 N 1.46843 * 109.52287 * 300.81906 * 8 7 6 10 10 C 1.46896 * 110.99930 * 185.83682 * 9 8 7 11 11 C 1.52999 * 109.47005 * 64.75743 * 10 9 8 12 12 N 1.46906 * 109.47282 * 179.97438 * 11 10 9 13 13 C 1.46894 * 111.00160 * 179.97438 * 12 11 10 14 14 H 1.09007 * 109.46997 * 35.00507 * 13 12 11 15 15 C 1.52997 * 109.47682 * 275.00068 * 13 12 11 16 16 C 1.50705 * 109.47199 * 155.00144 * 13 12 11 17 17 H 1.08003 * 119.99660 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00090 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00113 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99940 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46701 * 59.99807 * 20 18 16 22 22 H 1.48495 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47096 * 300.00158 * 20 18 16 24 24 H 1.09002 * 109.47098 * 183.12420 * 1 2 3 25 25 H 1.09000 * 109.46809 * 303.12077 * 1 2 3 26 26 H 1.09000 * 109.47290 * 63.12028 * 1 2 3 27 27 H 1.09001 * 109.46960 * 239.99814 * 2 1 3 28 28 H 1.09010 * 109.47054 * 120.00095 * 2 1 3 29 29 H 1.09000 * 109.50008 * 59.25085 * 5 3 2 30 30 H 1.09001 * 109.53227 * 299.15470 * 5 3 2 31 31 H 1.08998 * 109.52269 * 182.44200 * 6 5 3 32 32 H 1.08989 * 109.52258 * 62.24767 * 6 5 3 33 33 H 1.08996 * 109.51202 * 297.71643 * 7 6 5 34 34 H 1.09007 * 109.50230 * 177.59199 * 7 6 5 35 35 H 1.08995 * 109.46254 * 180.79942 * 8 7 6 36 36 H 1.09002 * 109.45288 * 60.82906 * 8 7 6 37 37 H 1.09001 * 109.47610 * 304.75595 * 10 9 8 38 38 H 1.09005 * 109.47178 * 184.75608 * 10 9 8 39 39 H 1.09006 * 109.47530 * 60.00052 * 11 10 9 40 40 H 1.08996 * 109.47234 * 299.99876 * 11 10 9 41 41 H 1.00899 * 111.00237 * 303.95478 * 12 11 10 42 42 H 1.08997 * 109.47208 * 300.00343 * 15 13 12 43 43 H 1.09002 * 109.46927 * 60.00070 * 15 13 12 44 44 H 1.08996 * 109.47267 * 179.97438 * 15 13 12 45 45 H 0.97001 * 119.99711 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6512 1.9649 -0.8740 5 6 1.5654 2.1512 1.2707 6 6 2.0948 3.5879 1.2760 7 6 3.6228 3.5608 1.1820 8 6 4.0378 2.8112 -0.0861 9 7 3.5079 1.4425 -0.0428 10 6 4.0014 0.6507 -1.1774 11 6 5.5184 0.4870 -1.0635 12 7 6.0119 -0.3054 -2.1978 13 6 7.4681 -0.4829 -2.1220 14 1 7.7692 -0.5739 -1.0783 15 6 8.1629 0.7271 -2.7497 16 6 7.8616 -1.7314 -2.8689 17 1 7.1053 -2.3330 -3.3512 18 6 9.1867 -2.1061 -2.9355 19 7 10.1075 -1.3738 -2.3477 20 14 9.6743 -3.6540 -3.8607 21 1 9.2644 -3.5304 -5.2826 22 1 11.1463 -3.8340 -3.7831 23 1 8.9996 -4.8281 -3.2513 24 1 -0.3633 -1.0262 0.0560 25 1 -0.3633 0.5615 0.8607 26 1 -0.3634 0.4646 -0.9166 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8901 29 1 1.9424 1.6211 2.1453 30 1 0.4757 2.1647 1.2951 31 1 1.7954 4.0830 2.1997 32 1 1.6869 4.1295 0.4226 33 1 4.0323 3.0530 2.0552 34 1 4.0032 4.5816 1.1422 35 1 5.1255 2.7778 -0.1487 36 1 3.6396 3.3274 -0.9597 37 1 3.7601 1.1616 -2.1095 38 1 3.5283 -0.3313 -1.1683 39 1 5.7598 -0.0241 -0.1314 40 1 5.9915 1.4688 -1.0726 41 1 5.5409 -1.1963 -2.2488 42 1 7.8619 0.8180 -3.7933 43 1 7.8784 1.6300 -2.2095 44 1 9.2434 0.5955 -2.6930 45 1 11.0398 -1.6377 -2.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309455829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:35 Heat of formation + Delta-G solvation = -16.327731 kcal Electronic energy + Delta-G solvation = -19610.761932 eV Core-core repulsion = 16855.128126 eV Total energy + Delta-G solvation = -2755.633806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49577 -36.07161 -34.08847 -33.85554 -32.15709 -29.27123 -29.21752 -26.41196 -25.14437 -24.43214 -23.54610 -20.98456 -20.70002 -19.77107 -19.54878 -16.45536 -16.09626 -15.24263 -14.94973 -14.87242 -14.57511 -14.18940 -13.73645 -13.64451 -13.41693 -13.07785 -12.73072 -12.54111 -12.25013 -11.85960 -11.68439 -11.59237 -11.33343 -11.19907 -10.97087 -10.90106 -10.76315 -10.71517 -10.57515 -10.22798 -10.21383 -10.08122 -9.92749 -9.76235 -8.79926 -8.44573 -8.14389 -7.22005 -5.99840 -4.06297 3.32858 3.37096 3.39867 3.90223 4.42771 4.66724 4.70883 4.84781 5.00232 5.13283 5.23095 5.29181 5.31316 5.32890 5.50080 5.53843 5.58368 5.61310 5.64867 5.77479 5.84733 5.88573 5.91078 5.94937 5.99750 6.07209 6.16651 6.21107 6.22444 6.35344 6.48744 6.57378 6.91572 7.17213 7.21507 7.29020 7.31957 7.55269 7.80746 7.93748 8.30411 8.42861 8.71643 9.04466 9.59477 11.06553 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.031391 B = 0.004097 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.775273 B = 6832.239868 C = 7518.603531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.087 3.913 4 H 0.036 0.964 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.117 4.117 8 C 0.053 3.947 9 N -0.534 5.534 10 C 0.054 3.946 11 C 0.065 3.935 12 N -0.690 5.690 13 C 0.213 3.787 14 H 0.001 0.999 15 C -0.123 4.123 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.329 0.671 42 H 0.030 0.970 43 H 0.002 0.998 44 H 0.080 0.920 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.848 7.575 6.840 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.021 4.021 4 H 0.054 0.946 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.075 4.075 9 N -0.259 5.259 10 C -0.073 4.073 11 C -0.065 4.065 12 N -0.322 5.322 13 C 0.105 3.895 14 H 0.018 0.982 15 C -0.181 4.181 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.049 0.951 43 H 0.022 0.978 44 H 0.099 0.901 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.414 7.912 6.874 19.475 hybrid contribution 0.182 -1.031 -0.559 1.187 sum -16.232 6.881 6.315 18.727 Atomic orbital electron populations 1.21815 0.95826 1.01614 1.01659 1.21695 0.95337 0.96087 1.03028 1.21592 0.87656 0.95908 0.96955 0.94605 1.21676 0.99709 0.95438 0.98129 1.21585 0.96124 0.96824 1.01344 1.21594 0.95569 0.99625 0.98687 1.22130 1.00676 0.88194 0.96479 1.61874 1.07427 1.12652 1.43946 1.22190 0.96498 0.97867 0.90778 1.21852 0.92545 0.98929 0.93172 1.60685 1.08469 1.21619 1.41416 1.19081 0.81169 0.94233 0.95004 0.98151 1.21704 1.03096 0.95113 0.98235 1.21234 0.92756 1.07814 1.33892 0.92300 1.24918 0.96496 0.97039 0.95545 1.69892 1.00994 1.38213 1.43821 0.86583 0.77234 0.83313 0.80391 1.20213 1.21307 1.20332 0.92684 0.92493 0.93010 0.91337 0.91119 0.91162 0.91633 0.92092 0.92536 0.91118 0.91815 0.90079 0.95232 0.94528 0.90592 0.95597 0.92032 0.85448 0.95062 0.97849 0.90135 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.68 37.16 0.36 -0.97 16 2 C -0.12 -1.34 5.10 -26.73 -0.14 -1.48 16 3 C 0.09 1.01 1.95 -67.72 -0.13 0.88 16 4 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 5 C -0.11 -1.11 5.04 -26.65 -0.13 -1.24 16 6 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 7 C -0.12 -1.26 6.09 -26.65 -0.16 -1.42 16 8 C 0.05 0.69 5.28 -3.83 -0.02 0.67 16 9 N -0.53 -7.33 4.50 -226.69 -1.02 -8.35 16 10 C 0.05 0.84 4.92 -3.83 -0.02 0.82 16 11 C 0.07 1.23 5.39 -3.82 -0.02 1.21 16 12 N -0.69 -15.15 6.30 -107.95 -0.68 -15.83 16 13 C 0.21 5.54 2.60 -68.87 -0.18 5.36 16 14 H 0.00 0.02 7.80 -51.93 -0.40 -0.38 16 15 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 16 C -0.52 -14.46 8.59 -34.44 -0.30 -14.76 16 17 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 6.33 -51.93 -0.33 0.12 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.80 6.03 -51.93 -0.31 0.48 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.56 6.45 -51.93 -0.33 0.22 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.08 1.13 5.67 -51.93 -0.29 0.84 16 39 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 40 H 0.06 1.19 5.69 -51.93 -0.30 0.90 16 41 H 0.33 7.00 8.22 -39.29 -0.32 6.67 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 44 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -28.48 335.70 -10.03 -38.52 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.34 Total: 2.75 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.65 Total: -13.42 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.07 Total: -49.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.48 -10.03 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309455829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.188 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds