Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08991 * 109.45479 * 301.74123 * 3 2 1 5 5 C 1.53040 * 109.46481 * 61.71852 * 3 2 1 6 6 C 1.53121 * 109.27765 * 179.19427 * 5 3 2 7 7 C 1.53119 * 109.15826 * 302.34120 * 6 5 3 8 8 C 1.53044 * 109.27854 * 57.65743 * 7 6 5 9 9 N 1.46843 * 109.52287 * 300.81906 * 8 7 6 10 10 C 1.46896 * 110.99930 * 185.83682 * 9 8 7 11 11 C 1.52999 * 109.47005 * 64.75743 * 10 9 8 12 12 N 1.46906 * 109.47282 * 179.97438 * 11 10 9 13 13 C 1.46894 * 111.00160 * 179.97438 * 12 11 10 14 14 H 1.09007 * 109.46997 * 35.00507 * 13 12 11 15 15 C 1.52997 * 109.47682 * 275.00068 * 13 12 11 16 16 C 1.50705 * 109.47199 * 155.00144 * 13 12 11 17 17 H 1.08003 * 119.99660 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00090 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00113 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99940 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46701 * 59.99807 * 20 18 16 22 22 H 1.48495 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47096 * 300.00158 * 20 18 16 24 24 H 1.09002 * 109.47098 * 183.12420 * 1 2 3 25 25 H 1.09000 * 109.46809 * 303.12077 * 1 2 3 26 26 H 1.09000 * 109.47290 * 63.12028 * 1 2 3 27 27 H 1.09001 * 109.46960 * 239.99814 * 2 1 3 28 28 H 1.09010 * 109.47054 * 120.00095 * 2 1 3 29 29 H 1.09000 * 109.50008 * 59.25085 * 5 3 2 30 30 H 1.09001 * 109.53227 * 299.15470 * 5 3 2 31 31 H 1.08998 * 109.52269 * 182.44200 * 6 5 3 32 32 H 1.08989 * 109.52258 * 62.24767 * 6 5 3 33 33 H 1.08996 * 109.51202 * 297.71643 * 7 6 5 34 34 H 1.09007 * 109.50230 * 177.59199 * 7 6 5 35 35 H 1.08995 * 109.46254 * 180.79942 * 8 7 6 36 36 H 1.09002 * 109.45288 * 60.82906 * 8 7 6 37 37 H 1.09001 * 109.47610 * 304.75595 * 10 9 8 38 38 H 1.09005 * 109.47178 * 184.75608 * 10 9 8 39 39 H 1.09006 * 109.47530 * 60.00052 * 11 10 9 40 40 H 1.08996 * 109.47234 * 299.99876 * 11 10 9 41 41 H 1.00899 * 111.00237 * 303.95478 * 12 11 10 42 42 H 1.08997 * 109.47208 * 300.00343 * 15 13 12 43 43 H 1.09002 * 109.46927 * 60.00070 * 15 13 12 44 44 H 1.08996 * 109.47267 * 179.97438 * 15 13 12 45 45 H 0.97001 * 119.99711 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6512 1.9649 -0.8740 5 6 1.5654 2.1512 1.2707 6 6 2.0948 3.5879 1.2760 7 6 3.6228 3.5608 1.1820 8 6 4.0378 2.8112 -0.0861 9 7 3.5079 1.4425 -0.0428 10 6 4.0014 0.6507 -1.1774 11 6 5.5184 0.4870 -1.0635 12 7 6.0119 -0.3054 -2.1978 13 6 7.4681 -0.4829 -2.1220 14 1 7.7692 -0.5739 -1.0783 15 6 8.1629 0.7271 -2.7497 16 6 7.8616 -1.7314 -2.8689 17 1 7.1053 -2.3330 -3.3512 18 6 9.1867 -2.1061 -2.9355 19 7 10.1075 -1.3738 -2.3477 20 14 9.6743 -3.6540 -3.8607 21 1 9.2644 -3.5304 -5.2826 22 1 11.1463 -3.8340 -3.7831 23 1 8.9996 -4.8281 -3.2513 24 1 -0.3633 -1.0262 0.0560 25 1 -0.3633 0.5615 0.8607 26 1 -0.3634 0.4646 -0.9166 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8901 29 1 1.9424 1.6211 2.1453 30 1 0.4757 2.1647 1.2951 31 1 1.7954 4.0830 2.1997 32 1 1.6869 4.1295 0.4226 33 1 4.0323 3.0530 2.0552 34 1 4.0032 4.5816 1.1422 35 1 5.1255 2.7778 -0.1487 36 1 3.6396 3.3274 -0.9597 37 1 3.7601 1.1616 -2.1095 38 1 3.5283 -0.3313 -1.1683 39 1 5.7598 -0.0241 -0.1314 40 1 5.9915 1.4688 -1.0726 41 1 5.5409 -1.1963 -2.2488 42 1 7.8619 0.8180 -3.7933 43 1 7.8784 1.6300 -2.2095 44 1 9.2434 0.5955 -2.6930 45 1 11.0398 -1.6377 -2.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309455829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = -34.058698 kcal Electronic energy + Delta-G solvation = -19611.530805 eV Core-core repulsion = 16855.128126 eV Total energy + Delta-G solvation = -2756.402679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50591 -37.85241 -35.32995 -34.93692 -33.89681 -31.01463 -30.08731 -28.00748 -27.20183 -25.31113 -24.73403 -22.29489 -21.74585 -21.58711 -20.54650 -18.51835 -17.26295 -16.78324 -16.42685 -16.08516 -15.77258 -15.33938 -15.14180 -14.90890 -14.62826 -14.31012 -14.05596 -13.69770 -13.69364 -13.32868 -12.97909 -12.86657 -12.69645 -12.62420 -12.42414 -12.32336 -12.22731 -12.12273 -11.96012 -11.85059 -11.56979 -11.48770 -11.05823 -10.94747 -10.86361 -10.57554 -9.25422 -9.09896 -8.13697 -6.28559 1.42734 1.44988 1.52676 2.41187 2.80602 3.14923 3.69875 3.84654 3.86199 3.95604 4.09497 4.22910 4.31395 4.35311 4.42210 4.46693 4.57718 4.58859 4.70780 4.78536 4.79229 4.85257 4.94608 4.99913 5.01476 5.05593 5.07332 5.10919 5.17391 5.19328 5.23331 5.28794 5.36278 5.43669 5.45561 5.52489 5.65585 5.82982 6.13569 6.20185 6.25881 6.44678 6.75352 6.98438 7.41949 8.92159 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.031391 B = 0.004097 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.775273 B = 6832.239868 C = 7518.603531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.086 3.914 4 H 0.034 0.966 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.051 3.949 9 N -0.542 5.542 10 C 0.069 3.931 11 C 0.073 3.927 12 N -0.686 5.686 13 C 0.216 3.784 14 H -0.034 1.034 15 C -0.111 4.111 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.270 1.270 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.082 0.918 39 H 0.011 0.989 40 H 0.054 0.946 41 H 0.333 0.667 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 7.563 6.861 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.022 4.022 4 H 0.052 0.948 5 C -0.146 4.146 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.077 4.077 9 N -0.267 5.267 10 C -0.059 4.059 11 C -0.057 4.057 12 N -0.317 5.317 13 C 0.107 3.893 14 H -0.016 1.016 15 C -0.170 4.170 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.195 1.195 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.167 7.909 6.902 20.982 hybrid contribution 0.710 -0.985 -0.526 1.323 sum -17.457 6.923 6.376 19.833 Atomic orbital electron populations 1.21777 0.93937 1.02323 1.02345 1.21677 0.96976 0.95340 1.02041 1.21709 0.85931 0.96671 0.97905 0.94802 1.21675 1.00895 0.95343 0.96667 1.21586 0.94794 0.96742 1.02468 1.21580 0.96840 0.99810 0.96904 1.22159 0.99567 0.88143 0.97858 1.61885 1.09147 1.12923 1.42772 1.21942 0.93855 0.98700 0.91392 1.21809 0.94958 0.97620 0.91326 1.60602 1.06321 1.22019 1.42784 1.18906 0.83483 0.94088 0.92773 1.01605 1.21526 1.01554 0.95713 0.98180 1.21559 0.93273 1.08663 1.34334 0.92086 1.25768 0.96419 1.00202 0.96279 1.70026 1.01284 1.39775 1.44710 0.85503 0.76936 0.79403 0.79125 1.19546 1.20875 1.19491 0.92091 0.91330 0.92690 0.92513 0.91892 0.91799 0.89608 0.90308 0.92093 0.91888 0.90501 0.91978 0.95259 0.95009 0.89943 0.97031 0.92742 0.84991 0.95286 0.96301 0.92353 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.68 71.98 0.70 -1.53 16 2 C -0.12 -2.50 5.10 30.59 0.16 -2.34 16 3 C 0.09 1.86 1.95 44.94 0.09 1.95 16 4 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.11 -1.90 5.04 30.65 0.15 -1.74 16 6 C -0.12 -1.96 6.00 30.67 0.18 -1.78 16 7 C -0.11 -2.29 6.09 30.65 0.19 -2.10 16 8 C 0.05 1.29 5.28 86.33 0.46 1.75 16 9 N -0.54 -14.62 4.50 -871.12 -3.92 -18.54 16 10 C 0.07 2.13 4.92 86.30 0.42 2.56 16 11 C 0.07 2.79 5.39 86.30 0.46 3.26 16 12 N -0.69 -30.46 6.30 -495.43 -3.12 -33.58 16 13 C 0.22 11.50 2.60 44.17 0.11 11.61 16 14 H -0.03 -1.99 7.80 -2.38 -0.02 -2.01 16 15 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 16 C -0.54 -30.38 8.59 25.60 0.22 -30.16 16 17 H 0.06 3.33 7.62 -2.91 -0.02 3.31 16 18 C 0.01 0.70 5.30 84.65 0.45 1.15 16 19 N -0.92 -53.95 11.32 21.44 0.24 -53.71 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.89 6.33 -2.39 -0.02 0.87 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 1.27 6.03 -2.39 -0.01 1.26 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.18 6.45 -2.39 -0.02 1.17 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 1.80 6.17 -2.39 -0.01 1.78 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.03 1.01 8.13 -2.39 -0.02 0.99 16 38 H 0.08 2.44 5.67 -2.38 -0.01 2.42 16 39 H 0.01 0.47 8.06 -2.38 -0.02 0.46 16 40 H 0.05 2.16 5.69 -2.39 -0.01 2.15 16 41 H 0.33 14.26 8.22 -89.69 -0.74 13.52 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 44 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 45 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -60.69 335.70 -0.32 -61.01 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.20 Total: 21.40 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.26 Total: -22.51 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -6.80 Total: -105.83 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -60.69 -0.32 -61.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309455829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -60.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds