Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 H 1.08994 * 109.47674 * 305.20360 * 3 2 1 5 5 C 1.50704 * 109.47181 * 185.20207 * 3 2 1 6 6 H 1.08004 * 119.99836 * 265.34988 * 5 3 2 7 7 C 1.37873 * 120.00032 * 85.34439 * 5 3 2 8 8 N 1.31512 * 119.99909 * 4.41870 * 7 5 3 9 9 Si 1.86792 * 120.00080 * 184.42093 * 7 5 3 10 10 H 1.48501 * 109.47500 * 184.99475 * 9 7 5 11 11 H 1.48497 * 109.47269 * 304.99748 * 9 7 5 12 12 H 1.48501 * 109.47266 * 64.99870 * 9 7 5 13 13 N 1.46900 * 109.46851 * 65.20521 * 3 2 1 14 14 C 1.46845 * 111.00180 * 39.82676 * 13 3 2 15 15 C 1.53039 * 109.52333 * 174.15869 * 14 13 3 16 16 C 1.53118 * 109.27545 * 59.18153 * 15 14 13 17 17 C 1.53122 * 109.16351 * 302.34397 * 16 15 14 18 18 H 1.08995 * 109.53209 * 297.69648 * 17 16 15 19 19 C 1.52996 * 109.50621 * 177.59625 * 17 16 15 20 20 C 1.46845 * 110.99975 * 275.61759 * 13 3 2 21 21 H 1.08996 * 109.46333 * 65.83080 * 20 13 3 22 22 C 1.53005 * 109.46181 * 305.85605 * 20 13 3 23 23 C 1.52998 * 109.46990 * 303.87485 * 22 20 13 24 24 N 1.46899 * 109.47071 * 183.94434 * 23 22 20 25 25 H 1.09004 * 109.46741 * 39.88701 * 1 2 3 26 26 H 1.08996 * 109.47517 * 159.88320 * 1 2 3 27 27 H 1.08998 * 109.46928 * 279.88791 * 1 2 3 28 28 H 1.09001 * 109.46718 * 240.00021 * 2 1 3 29 29 H 1.09003 * 109.47040 * 120.00348 * 2 1 3 30 30 H 0.97005 * 120.00355 * 354.53634 * 8 7 5 31 31 H 1.09003 * 109.46392 * 294.17593 * 14 13 3 32 32 H 1.08998 * 109.46482 * 54.14471 * 14 13 3 33 33 H 1.08993 * 109.50629 * 299.23883 * 15 14 13 34 34 H 1.08999 * 109.53536 * 179.14018 * 15 14 13 35 35 H 1.08999 * 109.52367 * 182.43575 * 16 15 14 36 36 H 1.09008 * 109.57820 * 62.28410 * 16 15 14 37 37 H 1.09007 * 109.47055 * 300.19999 * 19 17 16 38 38 H 1.08998 * 109.47045 * 60.19651 * 19 17 16 39 39 H 1.08994 * 109.47288 * 180.19750 * 19 17 16 40 40 H 1.09003 * 109.47123 * 63.87770 * 22 20 13 41 41 H 1.08999 * 109.46783 * 183.87440 * 22 20 13 42 42 H 1.08994 * 109.47258 * 303.94387 * 23 22 20 43 43 H 1.09005 * 109.47177 * 63.94994 * 23 22 20 44 44 H 1.00900 * 111.00649 * 184.67912 * 24 23 22 45 45 H 1.00897 * 111.00124 * 308.63640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6027 1.9826 -0.8396 5 6 3.5415 1.4444 -0.1288 6 1 4.1594 1.4927 0.7557 7 6 4.1265 1.3843 -1.3759 8 7 3.3768 1.4131 -2.4559 9 14 5.9840 1.2620 -1.5313 10 1 6.3667 1.3339 -2.9643 11 1 6.6174 2.3840 -0.7929 12 1 6.4446 -0.0290 -0.9601 13 7 1.6556 2.0977 1.2573 14 6 1.7998 1.1799 2.3946 15 6 1.5321 1.9352 3.6984 16 6 0.1161 2.5168 3.6641 17 6 -0.0224 3.4309 2.4436 18 1 0.6757 4.2634 2.5307 19 6 -1.4526 3.9693 2.3682 20 6 0.2904 2.6323 1.1762 21 1 -0.4172 1.8085 1.0822 22 6 0.1728 3.5470 -0.0447 23 6 1.2316 4.6482 0.0393 24 7 1.0584 5.5805 -1.0826 25 1 -0.3633 0.7886 -0.6591 26 1 -0.3634 -0.9649 -0.3534 27 1 -0.3633 0.1765 1.0124 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4102 1.3966 -2.3760 31 1 1.0851 0.3629 2.2948 32 1 2.8123 0.7766 2.4098 33 1 2.2551 2.7437 3.8056 34 1 1.6241 1.2506 4.5416 35 1 -0.0635 3.0920 4.5724 36 1 -0.6100 1.7065 3.5967 37 1 -2.1504 3.1362 2.2826 38 1 -1.6747 4.5380 3.2712 39 1 -1.5515 4.6171 1.4973 40 1 0.3268 2.9632 -0.9522 41 1 -0.8194 3.9977 -0.0667 42 1 1.1212 5.1874 0.9801 43 1 2.2248 4.2017 -0.0094 44 1 1.7917 6.2736 -1.0934 45 1 1.0158 5.0856 -1.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404315036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -11.580805 kcal Electronic energy + Delta-G solvation = -21436.887217 eV Core-core repulsion = 18681.459253 eV Total energy + Delta-G solvation = -2755.427964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67680 -35.45083 -34.74024 -32.39718 -31.88531 -30.64950 -28.06552 -26.41726 -25.71349 -23.43609 -22.46453 -22.14373 -20.53034 -19.50037 -18.41031 -16.66074 -15.75814 -15.23833 -14.88797 -14.38038 -14.28315 -13.73601 -13.67272 -13.52663 -13.00165 -12.69114 -12.42886 -12.30466 -11.96498 -11.85924 -11.45568 -11.20667 -11.11653 -11.08977 -10.86390 -10.81800 -10.64539 -10.50078 -10.20416 -10.09717 -10.08264 -9.81177 -9.67427 -9.13569 -8.57894 -8.24565 -8.13174 -7.01750 -6.32148 -4.01048 3.43897 3.44647 3.63353 4.51235 4.78836 5.03988 5.13145 5.21368 5.30149 5.42839 5.51823 5.71129 5.75982 5.81393 5.85947 5.90626 5.92069 5.96404 6.08510 6.12396 6.14767 6.20590 6.24615 6.29260 6.32293 6.37877 6.55236 6.57718 6.59975 6.67833 6.73915 6.79882 6.84566 6.90232 7.00494 7.18172 7.33400 7.65224 7.88932 7.99182 8.25997 8.40460 8.64823 8.92930 9.67488 11.04795 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.008614 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.687715 B = 3249.584574 C = 3728.676993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C 0.194 3.806 4 H 0.052 0.948 5 C -0.568 4.568 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.512 5.512 14 C 0.060 3.940 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.085 4.085 18 H 0.076 0.924 19 C -0.147 4.147 20 C 0.077 3.923 21 H 0.046 0.954 22 C -0.111 4.111 23 C 0.067 3.933 24 N -0.858 5.858 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.333 0.667 45 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 2.609 8.095 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.190 4.190 3 C 0.088 3.912 4 H 0.070 0.930 5 C -0.607 4.607 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.236 5.236 14 C -0.068 4.068 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.104 4.104 18 H 0.094 0.906 19 C -0.204 4.204 20 C -0.032 4.032 21 H 0.063 0.937 22 C -0.148 4.148 23 C -0.063 4.063 24 N -0.386 5.386 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.821 3.168 7.424 9.952 hybrid contribution -0.869 -1.189 0.705 1.632 sum -6.690 1.979 8.129 10.712 Atomic orbital electron populations 1.22155 0.98872 1.00031 1.00136 1.22424 0.92410 1.02926 1.01208 1.19695 0.96319 0.87767 0.87466 0.92998 1.21838 0.90602 1.53495 0.94743 0.93150 1.25697 1.06623 0.94014 0.92181 1.70817 1.06843 1.47290 1.30311 0.83587 0.74727 0.76433 0.75830 1.21014 1.21606 1.21650 1.62331 1.20434 1.36462 1.04410 1.21997 1.00831 0.93631 0.90355 1.21621 0.96669 0.99955 0.97311 1.21602 0.97167 0.98611 0.97516 1.21212 0.96365 0.98224 0.94608 0.90585 1.21877 0.96511 1.00622 1.01430 1.21853 0.91845 0.95965 0.93584 0.93682 1.21687 0.98690 0.96527 0.97939 1.21729 0.99316 0.92282 0.92979 1.58969 1.53433 1.19155 1.07059 0.93297 0.94553 0.93473 0.92612 0.93075 0.92213 0.95678 0.90890 0.91610 0.92813 0.92818 0.92970 0.93349 0.93291 0.92093 0.91951 0.92046 0.92116 0.92467 0.85608 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.14 37.16 0.30 -2.56 16 2 C -0.15 -3.27 4.86 -26.73 -0.13 -3.40 16 3 C 0.19 4.48 0.99 -68.86 -0.07 4.41 16 4 H 0.05 1.30 3.63 -51.93 -0.19 1.11 16 5 C -0.57 -15.05 8.21 -34.44 -0.28 -15.33 16 6 H 0.05 1.38 7.40 -52.48 -0.39 0.99 16 7 C 0.02 0.50 5.45 -17.82 -0.10 0.41 16 8 N -0.92 -26.31 13.62 55.43 0.76 -25.55 16 9 Si 1.07 24.82 29.91 -169.99 -5.08 19.74 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.51 -10.22 3.55 -220.14 -0.78 -11.00 16 14 C 0.06 1.11 4.04 -3.83 -0.02 1.10 16 15 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 16 C -0.11 -1.56 5.29 -26.61 -0.14 -1.71 16 17 C -0.09 -1.28 2.16 -90.54 -0.20 -1.48 16 18 H 0.08 1.23 6.41 -51.93 -0.33 0.90 16 19 C -0.15 -1.90 8.87 37.16 0.33 -1.57 16 20 C 0.08 1.33 1.03 -67.72 -0.07 1.26 16 21 H 0.05 0.81 4.38 -51.93 -0.23 0.58 16 22 C -0.11 -1.96 4.34 -26.73 -0.12 -2.08 16 23 C 0.07 1.21 6.34 -3.83 -0.02 1.19 16 24 N -0.86 -14.11 9.66 -10.37 -0.10 -14.21 16 25 H 0.05 0.91 6.95 -51.93 -0.36 0.55 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.82 5.13 -51.93 -0.27 0.55 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.10 6.11 -51.93 -0.32 0.78 16 30 H 0.27 7.62 6.66 -40.82 -0.27 7.35 16 31 H 0.03 0.46 5.20 -51.93 -0.27 0.19 16 32 H 0.07 1.48 7.31 -51.93 -0.38 1.10 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 40 H 0.06 1.25 5.70 -51.93 -0.30 0.95 16 41 H 0.06 1.01 6.25 -51.93 -0.32 0.68 16 42 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 43 H 0.06 1.26 7.25 -51.93 -0.38 0.88 16 44 H 0.33 5.00 9.08 -39.29 -0.36 4.64 16 45 H 0.34 5.65 8.93 -39.29 -0.35 5.30 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -27.20 318.10 -8.63 -35.83 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.55 Total: 12.14 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -0.67 Total: -21.74 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.13 Total: -50.77 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.20 -8.63 -35.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404315036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.251 kcal (2) G-P(sol) polarization free energy of solvation -27.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds