Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 H 1.08994 * 109.47674 * 305.20360 * 3 2 1 5 5 C 1.50704 * 109.47181 * 185.20207 * 3 2 1 6 6 H 1.08004 * 119.99836 * 265.34988 * 5 3 2 7 7 C 1.37873 * 120.00032 * 85.34439 * 5 3 2 8 8 N 1.31512 * 119.99909 * 4.41870 * 7 5 3 9 9 Si 1.86792 * 120.00080 * 184.42093 * 7 5 3 10 10 H 1.48501 * 109.47500 * 184.99475 * 9 7 5 11 11 H 1.48497 * 109.47269 * 304.99748 * 9 7 5 12 12 H 1.48501 * 109.47266 * 64.99870 * 9 7 5 13 13 N 1.46900 * 109.46851 * 65.20521 * 3 2 1 14 14 C 1.46845 * 111.00180 * 39.82676 * 13 3 2 15 15 C 1.53039 * 109.52333 * 174.15869 * 14 13 3 16 16 C 1.53118 * 109.27545 * 59.18153 * 15 14 13 17 17 C 1.53122 * 109.16351 * 302.34397 * 16 15 14 18 18 H 1.08995 * 109.53209 * 297.69648 * 17 16 15 19 19 C 1.52996 * 109.50621 * 177.59625 * 17 16 15 20 20 C 1.46845 * 110.99975 * 275.61759 * 13 3 2 21 21 H 1.08996 * 109.46333 * 65.83080 * 20 13 3 22 22 C 1.53005 * 109.46181 * 305.85605 * 20 13 3 23 23 C 1.52998 * 109.46990 * 303.87485 * 22 20 13 24 24 N 1.46899 * 109.47071 * 183.94434 * 23 22 20 25 25 H 1.09004 * 109.46741 * 39.88701 * 1 2 3 26 26 H 1.08996 * 109.47517 * 159.88320 * 1 2 3 27 27 H 1.08998 * 109.46928 * 279.88791 * 1 2 3 28 28 H 1.09001 * 109.46718 * 240.00021 * 2 1 3 29 29 H 1.09003 * 109.47040 * 120.00348 * 2 1 3 30 30 H 0.97005 * 120.00355 * 354.53634 * 8 7 5 31 31 H 1.09003 * 109.46392 * 294.17593 * 14 13 3 32 32 H 1.08998 * 109.46482 * 54.14471 * 14 13 3 33 33 H 1.08993 * 109.50629 * 299.23883 * 15 14 13 34 34 H 1.08999 * 109.53536 * 179.14018 * 15 14 13 35 35 H 1.08999 * 109.52367 * 182.43575 * 16 15 14 36 36 H 1.09008 * 109.57820 * 62.28410 * 16 15 14 37 37 H 1.09007 * 109.47055 * 300.19999 * 19 17 16 38 38 H 1.08998 * 109.47045 * 60.19651 * 19 17 16 39 39 H 1.08994 * 109.47288 * 180.19750 * 19 17 16 40 40 H 1.09003 * 109.47123 * 63.87770 * 22 20 13 41 41 H 1.08999 * 109.46783 * 183.87440 * 22 20 13 42 42 H 1.08994 * 109.47258 * 303.94387 * 23 22 20 43 43 H 1.09005 * 109.47177 * 63.94994 * 23 22 20 44 44 H 1.00900 * 111.00649 * 184.67912 * 24 23 22 45 45 H 1.00897 * 111.00124 * 308.63640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6027 1.9826 -0.8396 5 6 3.5415 1.4444 -0.1288 6 1 4.1594 1.4927 0.7557 7 6 4.1265 1.3843 -1.3759 8 7 3.3768 1.4131 -2.4559 9 14 5.9840 1.2620 -1.5313 10 1 6.3667 1.3339 -2.9643 11 1 6.6174 2.3840 -0.7929 12 1 6.4446 -0.0290 -0.9601 13 7 1.6556 2.0977 1.2573 14 6 1.7998 1.1799 2.3946 15 6 1.5321 1.9352 3.6984 16 6 0.1161 2.5168 3.6641 17 6 -0.0224 3.4309 2.4436 18 1 0.6757 4.2634 2.5307 19 6 -1.4526 3.9693 2.3682 20 6 0.2904 2.6323 1.1762 21 1 -0.4172 1.8085 1.0822 22 6 0.1728 3.5470 -0.0447 23 6 1.2316 4.6482 0.0393 24 7 1.0584 5.5805 -1.0826 25 1 -0.3633 0.7886 -0.6591 26 1 -0.3634 -0.9649 -0.3534 27 1 -0.3633 0.1765 1.0124 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4102 1.3966 -2.3760 31 1 1.0851 0.3629 2.2948 32 1 2.8123 0.7766 2.4098 33 1 2.2551 2.7437 3.8056 34 1 1.6241 1.2506 4.5416 35 1 -0.0635 3.0920 4.5724 36 1 -0.6100 1.7065 3.5967 37 1 -2.1504 3.1362 2.2826 38 1 -1.6747 4.5380 3.2712 39 1 -1.5515 4.6171 1.4973 40 1 0.3268 2.9632 -0.9522 41 1 -0.8194 3.9977 -0.0667 42 1 1.1212 5.1874 0.9801 43 1 2.2248 4.2017 -0.0094 44 1 1.7917 6.2736 -1.0934 45 1 1.0158 5.0856 -1.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404315036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -29.080390 kcal Electronic energy + Delta-G solvation = -21437.646056 eV Core-core repulsion = 18681.459253 eV Total energy + Delta-G solvation = -2756.186803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15935 -37.04154 -36.14922 -34.27345 -33.27670 -32.19670 -29.51204 -28.14261 -26.99038 -25.32709 -23.94343 -23.61389 -21.87381 -21.17974 -19.82380 -18.61330 -17.31277 -16.68157 -16.39665 -15.82456 -15.73796 -15.58203 -15.04993 -14.96757 -14.55165 -14.07949 -14.07577 -13.80058 -13.34256 -13.25622 -12.87227 -12.82833 -12.63729 -12.54356 -12.43010 -12.37108 -12.21041 -12.07467 -11.98277 -11.70467 -11.50929 -11.23609 -10.99396 -10.72707 -10.49946 -10.28179 -9.59415 -8.65166 -8.47546 -6.18146 1.51555 1.57711 1.76772 2.57735 3.15566 3.43151 3.69305 3.85138 3.95782 4.05536 4.19153 4.21159 4.33081 4.40283 4.43266 4.47343 4.53376 4.65798 4.73178 4.78778 4.80792 4.83428 4.95297 4.96558 5.00460 5.07501 5.09756 5.15840 5.16925 5.22794 5.29598 5.32436 5.36022 5.45411 5.50459 5.57255 5.67086 6.07327 6.20634 6.26349 6.53909 6.64865 6.72032 6.92908 7.56695 8.87230 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.008614 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.687715 B = 3249.584574 C = 3728.676993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.200 3.800 4 H 0.033 0.967 5 C -0.573 4.573 6 H 0.035 0.965 7 C -0.029 4.029 8 N -0.939 5.939 9 Si 1.105 2.895 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.060 3.940 15 C -0.111 4.111 16 C -0.106 4.106 17 C -0.082 4.082 18 H 0.064 0.936 19 C -0.141 4.141 20 C 0.078 3.922 21 H 0.047 0.953 22 C -0.103 4.103 23 C 0.080 3.920 24 N -0.850 5.850 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.050 0.950 30 H 0.256 0.744 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.012 0.988 44 H 0.342 0.658 45 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 3.068 10.011 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.183 4.183 3 C 0.092 3.908 4 H 0.050 0.950 5 C -0.612 4.612 6 H 0.054 0.946 7 C -0.227 4.227 8 N -0.578 5.578 9 Si 0.929 3.071 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.101 4.101 18 H 0.082 0.918 19 C -0.198 4.198 20 C -0.031 4.031 21 H 0.064 0.936 22 C -0.141 4.141 23 C -0.050 4.050 24 N -0.378 5.378 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.030 0.970 44 H 0.154 0.846 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.201 3.636 9.365 12.360 hybrid contribution -0.446 -1.313 0.142 1.394 sum -7.647 2.322 9.506 12.420 Atomic orbital electron populations 1.22003 0.95913 1.00871 1.01112 1.22246 0.95019 1.01514 0.99482 1.19431 0.94334 0.88441 0.88555 0.94977 1.22136 0.92693 1.52334 0.94004 0.94648 1.26853 1.09880 0.93704 0.92224 1.70918 1.06356 1.49625 1.30903 0.83056 0.70935 0.77326 0.75740 1.21289 1.20417 1.20220 1.62200 1.22557 1.36450 1.03383 1.22004 0.99347 0.93996 0.91475 1.21577 0.97622 0.99777 0.95943 1.21588 0.96035 0.98826 0.97930 1.21188 0.97636 0.97662 0.93592 0.91753 1.21819 0.94803 1.00944 1.02245 1.21926 0.90110 0.96105 0.94927 0.93555 1.21622 0.99363 0.96131 0.97000 1.21526 0.97017 0.92508 0.93981 1.58987 1.53617 1.18691 1.06500 0.93796 0.92866 0.91818 0.95884 0.93109 0.93369 0.95368 0.93639 0.92583 0.90547 0.90293 0.92130 0.92561 0.91276 0.92631 0.94781 0.90176 0.91081 0.96958 0.84617 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.14 71.98 0.59 -4.54 16 2 C -0.14 -6.35 4.86 30.59 0.15 -6.20 16 3 C 0.20 9.51 0.99 44.17 0.04 9.56 16 4 H 0.03 1.69 3.63 -2.39 -0.01 1.68 16 5 C -0.57 -31.44 8.21 25.60 0.21 -31.23 16 6 H 0.04 2.00 7.40 -2.91 -0.02 1.98 16 7 C -0.03 -1.61 5.45 84.65 0.46 -1.15 16 8 N -0.94 -55.91 13.62 21.45 0.29 -55.62 16 9 Si 1.11 50.98 29.91 68.60 2.05 53.03 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.52 -20.94 3.55 -850.40 -3.02 -23.96 16 14 C 0.06 2.18 4.04 86.33 0.35 2.53 16 15 C -0.11 -3.17 6.09 30.65 0.19 -2.99 16 16 C -0.11 -2.60 5.29 30.67 0.16 -2.44 16 17 C -0.08 -2.25 2.16 -10.74 -0.02 -2.27 16 18 H 0.06 1.94 6.41 -2.39 -0.02 1.92 16 19 C -0.14 -3.13 8.87 71.98 0.64 -2.49 16 20 C 0.08 2.63 1.03 44.94 0.05 2.67 16 21 H 0.05 1.57 4.38 -2.39 -0.01 1.56 16 22 C -0.10 -3.63 4.34 30.60 0.13 -3.50 16 23 C 0.08 2.92 6.34 86.30 0.55 3.47 16 24 N -0.85 -27.74 9.66 -186.72 -1.80 -29.54 16 25 H 0.04 1.62 6.95 -2.38 -0.02 1.60 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.09 5.13 -2.39 -0.01 2.07 16 28 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 2.22 6.11 -2.39 -0.01 2.20 16 30 H 0.26 15.35 6.66 -92.70 -0.62 14.73 16 31 H 0.03 1.00 5.20 -2.39 -0.01 0.99 16 32 H 0.05 1.87 7.31 -2.39 -0.02 1.86 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.30 6.37 -2.39 -0.02 1.28 16 40 H 0.03 1.39 5.70 -2.39 -0.01 1.38 16 41 H 0.08 2.51 6.25 -2.39 -0.01 2.50 16 42 H 0.07 2.43 6.33 -2.39 -0.02 2.41 16 43 H 0.01 0.55 7.25 -2.38 -0.02 0.53 16 44 H 0.34 10.14 9.08 -89.69 -0.81 9.32 16 45 H 0.33 11.35 8.93 -89.70 -0.80 10.55 16 Total: -1.00 -60.35 318.10 0.54 -59.81 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.47 Total: 34.87 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.49 Total: -38.58 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.53 Total: -109.12 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -60.35 0.54 -59.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404315036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.727 kcal (2) G-P(sol) polarization free energy of solvation -60.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds