Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46783 * 2 1 4 4 H 1.08996 * 109.47328 * 306.28832 * 3 2 1 5 5 C 1.50696 * 109.46813 * 186.28838 * 3 2 1 6 6 H 1.08007 * 119.99907 * 245.72713 * 5 3 2 7 7 C 1.37875 * 120.00287 * 65.73013 * 5 3 2 8 8 N 1.31516 * 120.00129 * 190.92200 * 7 5 3 9 9 Si 1.86803 * 119.99714 * 10.92232 * 7 5 3 10 10 H 1.48502 * 109.46763 * 88.58369 * 9 7 5 11 11 H 1.48500 * 109.46930 * 208.57752 * 9 7 5 12 12 H 1.48494 * 109.47162 * 328.58229 * 9 7 5 13 13 N 1.46900 * 109.46704 * 66.28790 * 3 2 1 14 14 C 1.46901 * 110.99933 * 207.89030 * 13 3 2 15 15 H 1.09004 * 109.57538 * 322.13071 * 14 13 3 16 16 C 1.53124 * 109.51852 * 82.28259 * 14 13 3 17 17 C 1.53037 * 109.27426 * 177.55943 * 16 14 13 18 18 N 1.46841 * 109.51708 * 300.82549 * 17 16 14 19 19 C 1.46897 * 111.00048 * 185.83422 * 18 17 16 20 20 C 1.46832 * 111.20727 * 61.75216 * 18 17 16 21 21 C 1.53001 * 109.46440 * 178.23641 * 20 18 17 22 22 C 1.52994 * 109.45755 * 58.25827 * 20 18 17 23 23 C 1.53035 * 109.51598 * 298.24658 * 20 18 17 24 24 H 1.08994 * 109.46989 * 184.40943 * 1 2 3 25 25 H 1.08995 * 109.47234 * 304.41053 * 1 2 3 26 26 H 1.08999 * 109.47000 * 64.41216 * 1 2 3 27 27 H 1.08997 * 109.47227 * 240.00278 * 2 1 3 28 28 H 1.08995 * 109.47371 * 119.99745 * 2 1 3 29 29 H 0.96996 * 119.99811 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00538 * 331.85319 * 13 3 2 31 31 H 1.09003 * 109.50243 * 57.61936 * 16 14 13 32 32 H 1.09000 * 109.53660 * 297.52371 * 16 14 13 33 33 H 1.09000 * 109.46471 * 60.84310 * 17 16 14 34 34 H 1.09003 * 109.45720 * 180.81597 * 17 16 14 35 35 H 1.09007 * 109.47119 * 56.05035 * 19 18 17 36 36 H 1.09008 * 109.47363 * 176.04774 * 19 18 17 37 37 H 1.09002 * 109.47717 * 296.05063 * 19 18 17 38 38 H 1.08997 * 109.47340 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46998 * 300.05069 * 21 20 18 40 40 H 1.09004 * 109.47183 * 60.04306 * 21 20 18 41 41 H 1.09001 * 109.46956 * 299.95857 * 22 20 18 42 42 H 1.09006 * 109.47278 * 59.95565 * 22 20 18 43 43 H 1.08996 * 109.47297 * 179.97438 * 22 20 18 44 44 H 1.09004 * 109.50594 * 299.24272 * 23 20 18 45 45 H 1.08996 * 109.50228 * 179.12025 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5876 1.9879 -0.8283 5 6 3.5389 1.4455 -0.1556 6 1 4.1648 1.7996 0.6502 7 6 4.1113 0.9961 -1.3267 8 7 5.4095 0.7948 -1.3891 9 14 3.0429 0.6731 -2.8246 10 1 2.9168 1.9202 -3.6208 11 1 3.6666 -0.3856 -3.6584 12 1 1.6960 0.2280 -2.3852 13 7 1.6780 2.0898 1.2681 14 6 1.5285 3.5409 1.0947 15 1 2.2847 3.9054 0.3993 16 6 0.1341 3.8492 0.5421 17 6 -0.0375 5.3651 0.4210 18 7 0.1339 5.9851 1.7410 19 6 -0.1601 7.4235 1.6892 20 6 1.4816 5.7427 2.2708 21 6 1.6308 6.4413 3.6239 22 6 2.5205 6.2966 1.2938 23 6 1.6986 4.2381 2.4472 24 1 -0.3633 -1.0246 0.0790 25 1 -0.3633 0.5807 0.8478 26 1 -0.3633 0.4438 -0.9269 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8121 0.4790 -2.2131 30 1 0.8394 1.6836 1.6550 31 1 -0.6218 3.4502 1.2186 32 1 0.0218 3.3905 -0.4403 33 1 0.7099 5.7615 -0.2663 34 1 -1.0346 5.5884 0.0415 35 1 -1.1660 7.5748 1.2974 36 1 -0.0938 7.8443 2.6925 37 1 0.5613 7.9186 1.0391 38 1 2.6314 6.2618 4.0171 39 1 1.4762 7.5130 3.4984 40 1 0.8909 6.0466 4.3202 41 1 2.4146 5.7987 0.3300 42 1 2.3661 7.3683 1.1681 43 1 3.5211 6.1172 1.6871 44 1 0.9673 3.8453 3.1536 45 1 2.7046 4.0575 2.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600153291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 1.900365 kcal Electronic energy + Delta-G solvation = -20741.518703 eV Core-core repulsion = 17986.675327 eV Total energy + Delta-G solvation = -2754.843377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91699 -36.68547 -33.50089 -32.78440 -31.91120 -29.84870 -27.57834 -27.08386 -26.53149 -25.22392 -22.65801 -22.31707 -20.52345 -19.71394 -18.05914 -16.69627 -15.87702 -15.46933 -15.01309 -14.57502 -14.11759 -14.07505 -13.97621 -13.49521 -12.86559 -12.72715 -12.53969 -12.47263 -12.05879 -11.92933 -11.83288 -11.73706 -11.57621 -11.50125 -11.20391 -10.94416 -10.82569 -10.68684 -10.43495 -10.25138 -10.18170 -9.92838 -9.68446 -9.31766 -9.09310 -8.45947 -8.13220 -7.25561 -6.01908 -3.95655 3.27998 3.37417 3.39369 4.01678 4.45141 4.82935 4.97293 5.10600 5.18097 5.27196 5.29831 5.41598 5.50928 5.57956 5.64929 5.72408 5.74947 5.83603 5.86347 5.89632 5.91389 5.96877 5.98032 6.06141 6.11101 6.20781 6.26089 6.32193 6.37295 6.43555 6.55420 6.60743 6.75173 6.75536 6.87441 7.02478 7.24003 7.27427 7.32506 7.82051 8.06778 8.36326 8.82788 9.13994 9.64047 11.11704 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.006503 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.078334 B = 4304.760651 C = 4592.368549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.004 1.004 5 C -0.495 4.495 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.670 5.670 14 C 0.093 3.907 15 H 0.083 0.917 16 C -0.146 4.146 17 C 0.057 3.943 18 N -0.530 5.530 19 C 0.019 3.981 20 C 0.106 3.894 21 C -0.139 4.139 22 C -0.183 4.183 23 C -0.089 4.089 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.261 0.739 30 H 0.319 0.681 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 10.018 5.490 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.299 5.299 14 C -0.018 4.018 15 H 0.101 0.899 16 C -0.186 4.186 17 C -0.071 4.071 18 N -0.254 5.254 19 C -0.129 4.129 20 C 0.017 3.983 21 C -0.196 4.196 22 C -0.241 4.241 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.924 9.745 5.910 15.787 hybrid contribution -0.726 0.243 -2.137 2.270 sum -11.651 9.988 3.774 15.803 Atomic orbital electron populations 1.21912 0.98626 1.00244 1.00438 1.22224 0.92487 1.00380 1.02201 1.19499 0.96542 0.89382 0.86041 0.98651 1.21038 0.89344 1.41597 1.01377 0.90312 1.24928 0.94668 0.95146 0.98470 1.69939 1.10393 1.46374 1.27076 0.87397 0.82402 0.78090 0.83786 1.20938 1.21547 1.17325 1.60597 1.38431 1.01465 1.29399 1.21572 0.94428 0.89657 0.96146 0.89858 1.22383 0.99906 0.94813 1.01470 1.22048 1.00272 0.95263 0.89556 1.62178 1.26755 1.11722 1.24782 1.22431 1.00241 0.88772 1.01497 1.21071 0.86657 0.96447 0.94165 1.21908 1.01935 0.99635 0.96147 1.22513 1.00322 1.00235 1.01075 1.21556 1.02100 0.91252 0.97826 0.93844 0.93432 0.93895 0.91794 0.91947 0.92885 0.86303 0.91696 0.91907 0.94447 0.91563 0.92026 0.91205 0.95601 0.92108 0.92868 0.92017 0.91596 0.93209 0.91657 0.91862 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.82 37.16 0.36 -2.30 16 2 C -0.13 -2.86 4.72 -26.73 -0.13 -2.99 16 3 C 0.19 4.46 1.38 -68.86 -0.10 4.36 16 4 H 0.00 -0.09 5.73 -51.93 -0.30 -0.39 16 5 C -0.50 -13.83 9.09 -34.44 -0.31 -14.15 16 6 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 7 C 0.07 1.98 5.38 -17.82 -0.10 1.88 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.86 21.06 25.80 -169.99 -4.39 16.67 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.25 -5.68 5.23 56.52 0.30 -5.39 16 13 N -0.67 -13.43 6.05 -100.82 -0.61 -14.04 16 14 C 0.09 1.66 2.04 -67.59 -0.14 1.52 16 15 H 0.08 1.73 6.19 -51.93 -0.32 1.41 16 16 C -0.15 -2.28 5.33 -26.65 -0.14 -2.42 16 17 C 0.06 0.79 5.17 -3.84 -0.02 0.77 16 18 N -0.53 -6.94 4.69 -227.22 -1.07 -8.01 16 19 C 0.02 0.20 8.78 60.06 0.53 0.73 16 20 C 0.11 1.43 0.68 -131.62 -0.09 1.34 16 21 C -0.14 -1.59 8.05 37.16 0.30 -1.29 16 22 C -0.18 -2.54 7.46 37.15 0.28 -2.27 16 23 C -0.09 -1.40 4.50 -26.65 -0.12 -1.52 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.45 4.61 -51.93 -0.24 1.21 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.32 5.79 6.26 -39.29 -0.25 5.55 16 31 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.06 1.04 7.31 -51.93 -0.38 0.66 16 33 H 0.04 0.54 6.19 -51.93 -0.32 0.22 16 34 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.06 0.61 8.10 -51.92 -0.42 0.19 16 36 H 0.07 0.69 6.19 -51.92 -0.32 0.36 16 37 H 0.03 0.28 6.47 -51.93 -0.34 -0.06 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.03 4.80 -51.93 -0.25 0.78 16 42 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -29.35 321.17 -8.14 -37.49 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.02 Total: 6.16 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 0.33 Total: -16.32 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.90 Total: -48.84 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.39 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.35 -8.14 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600153291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds