Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46783 * 2 1 4 4 H 1.08996 * 109.47328 * 306.28832 * 3 2 1 5 5 C 1.50696 * 109.46813 * 186.28838 * 3 2 1 6 6 H 1.08007 * 119.99907 * 245.72713 * 5 3 2 7 7 C 1.37875 * 120.00287 * 65.73013 * 5 3 2 8 8 N 1.31516 * 120.00129 * 190.92200 * 7 5 3 9 9 Si 1.86803 * 119.99714 * 10.92232 * 7 5 3 10 10 H 1.48502 * 109.46763 * 88.58369 * 9 7 5 11 11 H 1.48500 * 109.46930 * 208.57752 * 9 7 5 12 12 H 1.48494 * 109.47162 * 328.58229 * 9 7 5 13 13 N 1.46900 * 109.46704 * 66.28790 * 3 2 1 14 14 C 1.46901 * 110.99933 * 207.89030 * 13 3 2 15 15 H 1.09004 * 109.57538 * 322.13071 * 14 13 3 16 16 C 1.53124 * 109.51852 * 82.28259 * 14 13 3 17 17 C 1.53037 * 109.27426 * 177.55943 * 16 14 13 18 18 N 1.46841 * 109.51708 * 300.82549 * 17 16 14 19 19 C 1.46897 * 111.00048 * 185.83422 * 18 17 16 20 20 C 1.46832 * 111.20727 * 61.75216 * 18 17 16 21 21 C 1.53001 * 109.46440 * 178.23641 * 20 18 17 22 22 C 1.52994 * 109.45755 * 58.25827 * 20 18 17 23 23 C 1.53035 * 109.51598 * 298.24658 * 20 18 17 24 24 H 1.08994 * 109.46989 * 184.40943 * 1 2 3 25 25 H 1.08995 * 109.47234 * 304.41053 * 1 2 3 26 26 H 1.08999 * 109.47000 * 64.41216 * 1 2 3 27 27 H 1.08997 * 109.47227 * 240.00278 * 2 1 3 28 28 H 1.08995 * 109.47371 * 119.99745 * 2 1 3 29 29 H 0.96996 * 119.99811 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00538 * 331.85319 * 13 3 2 31 31 H 1.09003 * 109.50243 * 57.61936 * 16 14 13 32 32 H 1.09000 * 109.53660 * 297.52371 * 16 14 13 33 33 H 1.09000 * 109.46471 * 60.84310 * 17 16 14 34 34 H 1.09003 * 109.45720 * 180.81597 * 17 16 14 35 35 H 1.09007 * 109.47119 * 56.05035 * 19 18 17 36 36 H 1.09008 * 109.47363 * 176.04774 * 19 18 17 37 37 H 1.09002 * 109.47717 * 296.05063 * 19 18 17 38 38 H 1.08997 * 109.47340 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46998 * 300.05069 * 21 20 18 40 40 H 1.09004 * 109.47183 * 60.04306 * 21 20 18 41 41 H 1.09001 * 109.46956 * 299.95857 * 22 20 18 42 42 H 1.09006 * 109.47278 * 59.95565 * 22 20 18 43 43 H 1.08996 * 109.47297 * 179.97438 * 22 20 18 44 44 H 1.09004 * 109.50594 * 299.24272 * 23 20 18 45 45 H 1.08996 * 109.50228 * 179.12025 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5876 1.9879 -0.8283 5 6 3.5389 1.4455 -0.1556 6 1 4.1648 1.7996 0.6502 7 6 4.1113 0.9961 -1.3267 8 7 5.4095 0.7948 -1.3891 9 14 3.0429 0.6731 -2.8246 10 1 2.9168 1.9202 -3.6208 11 1 3.6666 -0.3856 -3.6584 12 1 1.6960 0.2280 -2.3852 13 7 1.6780 2.0898 1.2681 14 6 1.5285 3.5409 1.0947 15 1 2.2847 3.9054 0.3993 16 6 0.1341 3.8492 0.5421 17 6 -0.0375 5.3651 0.4210 18 7 0.1339 5.9851 1.7410 19 6 -0.1601 7.4235 1.6892 20 6 1.4816 5.7427 2.2708 21 6 1.6308 6.4413 3.6239 22 6 2.5205 6.2966 1.2938 23 6 1.6986 4.2381 2.4472 24 1 -0.3633 -1.0246 0.0790 25 1 -0.3633 0.5807 0.8478 26 1 -0.3633 0.4438 -0.9269 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8121 0.4790 -2.2131 30 1 0.8394 1.6836 1.6550 31 1 -0.6218 3.4502 1.2186 32 1 0.0218 3.3905 -0.4403 33 1 0.7099 5.7615 -0.2663 34 1 -1.0346 5.5884 0.0415 35 1 -1.1660 7.5748 1.2974 36 1 -0.0938 7.8443 2.6925 37 1 0.5613 7.9186 1.0391 38 1 2.6314 6.2618 4.0171 39 1 1.4762 7.5130 3.4984 40 1 0.8909 6.0466 4.3202 41 1 2.4146 5.7987 0.3300 42 1 2.3661 7.3683 1.1681 43 1 3.5211 6.1172 1.6871 44 1 0.9673 3.8453 3.1536 45 1 2.7046 4.0575 2.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600153291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = -19.015858 kcal Electronic energy + Delta-G solvation = -20742.425699 eV Core-core repulsion = 17986.675327 eV Total energy + Delta-G solvation = -2755.750372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09625 -38.29238 -35.08628 -33.92397 -33.86311 -31.23152 -29.15393 -28.25075 -27.91141 -26.38236 -24.33393 -23.56612 -21.87308 -21.51535 -19.22478 -18.82018 -17.12344 -16.90349 -16.42363 -16.04793 -15.67918 -15.33157 -15.24359 -14.89075 -14.64291 -14.08333 -13.92859 -13.77823 -13.40351 -13.33067 -13.06516 -12.95795 -12.74073 -12.70468 -12.60165 -12.39982 -12.26940 -12.18814 -11.99054 -11.72298 -11.63903 -11.45702 -11.23717 -11.13742 -10.85340 -10.61133 -9.17580 -8.90865 -8.26044 -6.24504 1.31321 1.34200 1.43637 2.35099 2.98722 3.07372 3.45604 3.82842 3.95435 4.03598 4.16913 4.27280 4.35451 4.42383 4.43008 4.47910 4.51274 4.60331 4.64136 4.70533 4.76279 4.79741 4.85210 4.89758 4.95661 5.02658 5.03782 5.09376 5.14040 5.17023 5.18772 5.19710 5.30785 5.36974 5.38184 5.52906 5.54099 5.81273 6.14630 6.20813 6.26054 6.60265 6.81994 7.03837 7.39788 8.91597 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.006503 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.078334 B = 4304.760651 C = 4592.368549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.203 3.797 4 H -0.006 1.006 5 C -0.498 4.498 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.922 3.078 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.216 1.216 13 N -0.680 5.680 14 C 0.094 3.906 15 H 0.045 0.955 16 C -0.137 4.137 17 C 0.059 3.941 18 N -0.532 5.532 19 C 0.017 3.983 20 C 0.109 3.891 21 C -0.134 4.134 22 C -0.180 4.180 23 C -0.083 4.083 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 10.825 5.611 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.093 3.907 4 H 0.012 0.988 5 C -0.537 4.537 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.746 3.254 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.139 1.139 13 N -0.311 5.311 14 C -0.016 4.016 15 H 0.063 0.937 16 C -0.176 4.176 17 C -0.069 4.069 18 N -0.256 5.256 19 C -0.130 4.130 20 C 0.019 3.981 21 C -0.191 4.191 22 C -0.238 4.238 23 C -0.121 4.121 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.411 10.566 6.058 18.869 hybrid contribution 0.443 0.040 -2.070 2.117 sum -13.968 10.607 3.989 17.987 Atomic orbital electron populations 1.21821 0.94778 1.02255 1.01456 1.22100 0.95871 0.98195 1.01134 1.19256 0.93068 0.91079 0.87281 0.98831 1.21305 0.91961 1.40529 0.99895 0.95546 1.25785 0.95929 0.95115 1.01830 1.70103 1.12709 1.48353 1.28048 0.86330 0.81995 0.77886 0.79191 1.20802 1.21527 1.13867 1.60436 1.39673 1.02842 1.28196 1.21521 0.95093 0.88270 0.96748 0.93670 1.22244 0.98041 0.96410 1.00938 1.22020 1.01095 0.93864 0.89951 1.62194 1.25847 1.13433 1.24113 1.22526 1.00997 0.86982 1.02508 1.21021 0.87004 0.94780 0.95311 1.21865 1.02148 1.00463 0.94627 1.22479 1.00108 1.01193 1.00041 1.21474 1.01062 0.93115 0.96468 0.91474 0.91820 0.93389 0.93248 0.92786 0.92884 0.84655 0.90461 0.92781 0.95591 0.89431 0.90611 0.89820 0.95643 0.92174 0.91082 0.91486 0.93882 0.91336 0.92730 0.91100 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.82 71.98 0.71 -3.79 16 2 C -0.13 -5.54 4.72 30.60 0.14 -5.39 16 3 C 0.20 9.33 1.38 44.17 0.06 9.39 16 4 H -0.01 -0.27 5.73 -2.39 -0.01 -0.28 16 5 C -0.50 -29.10 9.09 25.60 0.23 -28.87 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.58 5.38 84.65 0.46 1.03 16 8 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.92 43.95 25.80 68.60 1.77 45.72 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.22 -9.10 5.23 99.48 0.52 -8.58 16 13 N -0.68 -27.41 6.05 -472.88 -2.86 -30.27 16 14 C 0.09 3.39 2.04 45.00 0.09 3.48 16 15 H 0.04 1.97 6.19 -2.38 -0.01 1.96 16 16 C -0.14 -4.04 5.33 30.65 0.16 -3.88 16 17 C 0.06 1.51 5.17 86.33 0.45 1.96 16 18 N -0.53 -12.56 4.69 -872.78 -4.10 -16.65 16 19 C 0.02 0.32 8.78 127.69 1.12 1.44 16 20 C 0.11 2.81 0.68 3.55 0.00 2.81 16 21 C -0.13 -2.76 8.05 71.98 0.58 -2.19 16 22 C -0.18 -4.99 7.46 71.98 0.54 -4.46 16 23 C -0.08 -2.59 4.50 30.64 0.14 -2.45 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.75 6.40 -2.39 -0.02 1.74 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 2.15 4.61 -2.39 -0.01 2.14 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.33 11.64 6.26 -89.70 -0.56 11.08 16 31 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 32 H 0.05 1.69 7.31 -2.39 -0.02 1.67 16 33 H 0.03 0.73 6.19 -2.39 -0.01 0.71 16 34 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 35 H 0.08 1.20 8.10 -2.38 -0.02 1.18 16 36 H 0.08 1.31 6.19 -2.38 -0.01 1.30 16 37 H 0.03 0.47 6.47 -2.39 -0.02 0.46 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.23 6.32 -2.39 -0.02 1.21 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 41 H 0.04 1.38 4.80 -2.39 -0.01 1.37 16 42 H 0.07 1.61 6.55 -2.38 -0.02 1.60 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.68 321.17 0.00 -66.68 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.21 Total: 26.07 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 4.68 Total: -30.91 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -6.66 Total: -107.56 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.77 Total: 45.72 kcal Total: -66.68 0.00 -66.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600153291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.668 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds