Wall clock time and date at job start Mon Mar 30 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 H 1.09000 * 109.46653 * 54.70757 * 3 2 1 5 5 C 1.50700 * 109.46802 * 174.70453 * 3 2 1 6 6 H 1.08000 * 119.99188 * 120.00046 * 5 3 2 7 7 C 1.37874 * 120.00628 * 300.00147 * 5 3 2 8 8 N 1.31520 * 119.99562 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46924 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47128 * 120.00226 * 9 7 5 12 12 H 1.48506 * 109.46991 * 240.00220 * 9 7 5 13 13 N 1.46895 * 109.47237 * 294.70612 * 3 2 1 14 14 C 1.46898 * 111.00007 * 103.84759 * 13 3 2 15 15 C 1.52997 * 109.47664 * 186.88985 * 14 13 3 16 16 H 1.09007 * 112.74579 * 77.18204 * 15 14 13 17 17 C 1.53508 * 113.53518 * 208.00742 * 15 14 13 18 18 C 1.53512 * 83.57877 * 140.79419 * 17 15 14 19 19 N 1.47482 * 87.93076 * 333.97625 * 18 17 15 20 20 C 1.46903 * 110.99917 * 138.70058 * 19 18 17 21 21 C 1.53004 * 109.47353 * 326.57056 * 20 19 18 22 22 C 1.52995 * 109.47011 * 86.57034 * 20 19 18 23 23 C 1.53001 * 109.47194 * 206.57029 * 20 19 18 24 24 H 1.08991 * 109.47504 * 185.70767 * 1 2 3 25 25 H 1.08995 * 109.46742 * 305.70964 * 1 2 3 26 26 H 1.09004 * 109.47123 * 65.70343 * 1 2 3 27 27 H 1.09005 * 109.46624 * 240.00154 * 2 1 3 28 28 H 1.08999 * 109.46795 * 120.00440 * 2 1 3 29 29 H 0.97002 * 119.99654 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00573 * 227.80506 * 13 3 2 31 31 H 1.09005 * 109.47108 * 66.88680 * 14 13 3 32 32 H 1.09009 * 109.47205 * 306.89137 * 14 13 3 33 33 H 1.08998 * 114.16963 * 254.44455 * 17 15 14 34 34 H 1.09004 * 114.16965 * 27.14574 * 17 15 14 35 35 H 1.08996 * 113.47818 * 219.20714 * 18 17 15 36 36 H 1.09003 * 113.52814 * 88.75218 * 18 17 15 37 37 H 1.09002 * 109.47006 * 69.60198 * 21 20 19 38 38 H 1.08995 * 109.47550 * 189.60873 * 21 20 19 39 39 H 1.09004 * 109.46755 * 309.60814 * 21 20 19 40 40 H 1.08997 * 109.47353 * 59.99992 * 22 20 19 41 41 H 1.09003 * 109.47153 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.47472 * 299.99536 * 22 20 19 43 43 H 1.09006 * 109.46931 * 55.77355 * 23 20 19 44 44 H 1.08997 * 109.47030 * 175.77250 * 23 20 19 45 45 H 1.09000 * 109.46877 * 295.77557 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5414 1.4444 0.1311 6 1 4.1503 1.8877 -0.6429 7 6 4.1374 0.8804 1.2391 8 7 3.3957 0.3402 2.1813 9 14 5.9983 0.8834 1.4018 10 1 6.5978 1.5464 0.2160 11 1 6.3865 1.6209 2.6309 12 1 6.4899 -0.5153 1.4877 13 7 1.6576 2.0972 -1.2582 14 6 0.5263 3.0115 -1.0531 15 6 0.0470 3.5415 -2.4060 16 1 -0.5501 2.8141 -2.9560 17 6 -0.6026 4.9300 -2.3251 18 6 0.1444 5.1665 -3.6452 19 7 1.1214 4.1500 -3.2126 20 6 1.5006 3.2751 -4.3301 21 6 0.3023 3.0915 -5.2635 22 6 2.6577 3.9093 -5.1044 23 6 1.9368 1.9131 -3.7862 24 1 -0.3634 -1.0225 0.1022 25 1 -0.3632 0.5998 0.8344 26 1 -0.3633 0.4229 -0.9367 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8151 -0.0563 2.9610 30 1 2.4430 2.5800 -1.6680 31 1 0.8425 3.8461 -0.4273 32 1 -0.2880 2.4779 -0.5628 33 1 -1.6882 4.9211 -2.4221 34 1 -0.2473 5.5413 -1.4955 35 1 0.5681 6.1671 -3.7312 36 1 -0.4260 4.8733 -4.5266 37 1 0.0984 4.0286 -5.7816 38 1 0.5261 2.3138 -5.9936 39 1 -0.5716 2.8014 -4.6801 40 1 3.5114 4.0401 -4.4395 41 1 2.9394 3.2599 -5.9333 42 1 2.3470 4.8796 -5.4919 43 1 1.1392 1.4948 -3.1721 44 1 2.1462 1.2401 -4.6176 45 1 2.8355 2.0343 -3.1815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690287428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:22 Heat of formation + Delta-G solvation = 46.447389 kcal Electronic energy + Delta-G solvation = -20790.805590 eV Core-core repulsion = 18037.893917 eV Total energy + Delta-G solvation = -2752.911673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76574 -36.04296 -34.78395 -32.47058 -30.86730 -28.09243 -27.43465 -27.17391 -26.54426 -25.33139 -22.81952 -21.52986 -20.22606 -19.21746 -18.31336 -16.71983 -16.13461 -15.01073 -14.65539 -14.52828 -14.29650 -13.71905 -13.47871 -13.36289 -12.75405 -12.51560 -12.37939 -12.27896 -11.82059 -11.77389 -11.46373 -11.21818 -11.09092 -11.02160 -10.96003 -10.72945 -10.67276 -10.59766 -10.46096 -10.30946 -10.07803 -9.95104 -9.57093 -9.22909 -8.73980 -8.45000 -8.33883 -6.99263 -5.96920 -4.04093 3.30830 3.38934 3.43232 4.20220 4.44391 4.68975 4.91643 5.02050 5.17684 5.26889 5.32603 5.42629 5.55159 5.66558 5.68198 5.79330 5.83625 5.92057 5.93913 6.00445 6.09818 6.13391 6.26983 6.34960 6.39938 6.43250 6.45495 6.48878 6.56883 6.69608 6.73465 6.76044 7.11181 7.18767 7.27141 7.48322 7.54760 7.66836 7.84116 8.06647 8.36082 8.50965 8.81458 9.11938 9.61869 11.07517 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.006469 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.094251 B = 4327.212908 C = 4801.890398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.213 3.787 4 H 0.007 0.993 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.074 3.926 15 C 0.035 3.965 16 H 0.080 0.920 17 C -0.146 4.146 18 C -0.018 4.018 19 N -0.451 5.451 20 C 0.067 3.933 21 C -0.176 4.176 22 C -0.129 4.129 23 C -0.142 4.142 24 H 0.025 0.975 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.087 0.913 29 H 0.259 0.741 30 H 0.341 0.659 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 6.303 -11.720 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.025 0.975 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.315 5.315 14 C -0.056 4.056 15 C -0.074 4.074 16 H 0.097 0.903 17 C -0.185 4.185 18 C -0.147 4.147 19 N -0.174 5.174 20 C -0.023 4.023 21 C -0.235 4.235 22 C -0.187 4.187 23 C -0.199 4.199 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.130 5.857 -11.461 14.714 hybrid contribution 0.750 0.393 0.157 0.862 sum -6.380 6.250 -11.304 14.406 Atomic orbital electron populations 1.21797 0.99774 0.98485 0.99650 1.21512 0.91324 0.99749 1.01609 1.19132 0.93893 0.91099 0.85389 0.97537 1.21526 0.91787 1.37652 1.05021 0.92486 1.24915 0.97965 0.95236 0.95771 1.69906 1.34600 1.38760 1.09420 0.86553 0.85973 0.77633 0.77913 1.19815 1.21184 1.21065 1.61344 1.09892 1.31646 1.28569 1.21867 0.95971 0.94833 0.92960 1.23475 0.92383 0.94966 0.96603 0.90264 1.23235 0.99109 0.97814 0.98295 1.23978 0.94843 0.98322 0.97544 1.69135 1.26114 1.08284 1.13901 1.21545 0.94510 0.95260 0.91016 1.22524 0.99376 1.01306 1.00244 1.21716 0.98226 0.99442 0.99313 1.22281 1.04802 0.93028 0.99838 0.95561 0.94624 0.93919 0.94678 0.89523 0.93095 0.83749 0.95952 0.91713 0.91344 0.89253 0.90665 0.90388 0.92558 0.92269 0.92252 0.91876 0.92877 0.93614 0.88771 0.94424 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.70 37.16 0.32 -2.52 16 2 C -0.10 -2.49 5.45 -26.73 -0.15 -2.63 16 3 C 0.21 5.26 2.19 -68.86 -0.15 5.11 16 4 H 0.01 0.19 7.62 -51.93 -0.40 -0.21 16 5 C -0.52 -14.22 8.60 -34.44 -0.30 -14.51 16 6 H 0.06 1.55 7.38 -52.49 -0.39 1.17 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.39 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.68 -13.96 3.00 -107.95 -0.32 -14.29 16 14 C 0.07 1.34 5.20 -3.83 -0.02 1.32 16 15 C 0.04 0.51 2.39 -71.43 -0.17 0.34 16 16 H 0.08 1.14 5.59 -51.93 -0.29 0.85 16 17 C -0.15 -1.80 8.00 -26.20 -0.21 -2.01 16 18 C -0.02 -0.22 7.31 -7.54 -0.06 -0.27 16 19 N -0.45 -6.56 5.49 -220.81 -1.21 -7.77 16 20 C 0.07 0.91 0.74 -131.60 -0.10 0.81 16 21 C -0.18 -2.04 7.02 37.16 0.26 -1.78 16 22 C -0.13 -1.66 8.70 37.16 0.32 -1.34 16 23 C -0.14 -2.24 6.73 37.16 0.25 -1.99 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 26 H 0.04 0.81 7.03 -51.93 -0.37 0.44 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.34 7.31 5.00 -39.29 -0.20 7.12 16 31 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 32 H 0.06 1.18 6.36 -51.92 -0.33 0.85 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.84 4.83 -51.93 -0.25 0.59 16 37 H 0.06 0.59 6.48 -51.93 -0.34 0.25 16 38 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.06 0.70 5.85 -51.93 -0.30 0.39 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 43 H 0.09 1.63 5.28 -51.93 -0.27 1.36 16 44 H 0.04 0.55 8.13 -51.93 -0.42 0.12 16 45 H 0.07 1.31 6.18 -51.93 -0.32 0.99 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -27.25 325.93 -9.04 -36.29 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.94 Total: 7.02 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.08 Total: -17.82 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.91 Total: -46.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.25 -9.04 -36.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690287428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.738 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds