Wall clock time and date at job start Mon Mar 30 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 H 1.09000 * 109.46653 * 54.70757 * 3 2 1 5 5 C 1.50700 * 109.46802 * 174.70453 * 3 2 1 6 6 H 1.08000 * 119.99188 * 120.00046 * 5 3 2 7 7 C 1.37874 * 120.00628 * 300.00147 * 5 3 2 8 8 N 1.31520 * 119.99562 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46924 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47128 * 120.00226 * 9 7 5 12 12 H 1.48506 * 109.46991 * 240.00220 * 9 7 5 13 13 N 1.46895 * 109.47237 * 294.70612 * 3 2 1 14 14 C 1.46898 * 111.00007 * 103.84759 * 13 3 2 15 15 C 1.52997 * 109.47664 * 186.88985 * 14 13 3 16 16 H 1.09007 * 112.74579 * 77.18204 * 15 14 13 17 17 C 1.53508 * 113.53518 * 208.00742 * 15 14 13 18 18 C 1.53512 * 83.57877 * 140.79419 * 17 15 14 19 19 N 1.47482 * 87.93076 * 333.97625 * 18 17 15 20 20 C 1.46903 * 110.99917 * 138.70058 * 19 18 17 21 21 C 1.53004 * 109.47353 * 326.57056 * 20 19 18 22 22 C 1.52995 * 109.47011 * 86.57034 * 20 19 18 23 23 C 1.53001 * 109.47194 * 206.57029 * 20 19 18 24 24 H 1.08991 * 109.47504 * 185.70767 * 1 2 3 25 25 H 1.08995 * 109.46742 * 305.70964 * 1 2 3 26 26 H 1.09004 * 109.47123 * 65.70343 * 1 2 3 27 27 H 1.09005 * 109.46624 * 240.00154 * 2 1 3 28 28 H 1.08999 * 109.46795 * 120.00440 * 2 1 3 29 29 H 0.97002 * 119.99654 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00573 * 227.80506 * 13 3 2 31 31 H 1.09005 * 109.47108 * 66.88680 * 14 13 3 32 32 H 1.09009 * 109.47205 * 306.89137 * 14 13 3 33 33 H 1.08998 * 114.16963 * 254.44455 * 17 15 14 34 34 H 1.09004 * 114.16965 * 27.14574 * 17 15 14 35 35 H 1.08996 * 113.47818 * 219.20714 * 18 17 15 36 36 H 1.09003 * 113.52814 * 88.75218 * 18 17 15 37 37 H 1.09002 * 109.47006 * 69.60198 * 21 20 19 38 38 H 1.08995 * 109.47550 * 189.60873 * 21 20 19 39 39 H 1.09004 * 109.46755 * 309.60814 * 21 20 19 40 40 H 1.08997 * 109.47353 * 59.99992 * 22 20 19 41 41 H 1.09003 * 109.47153 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.47472 * 299.99536 * 22 20 19 43 43 H 1.09006 * 109.46931 * 55.77355 * 23 20 19 44 44 H 1.08997 * 109.47030 * 175.77250 * 23 20 19 45 45 H 1.09000 * 109.46877 * 295.77557 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5414 1.4444 0.1311 6 1 4.1503 1.8877 -0.6429 7 6 4.1374 0.8804 1.2391 8 7 3.3957 0.3402 2.1813 9 14 5.9983 0.8834 1.4018 10 1 6.5978 1.5464 0.2160 11 1 6.3865 1.6209 2.6309 12 1 6.4899 -0.5153 1.4877 13 7 1.6576 2.0972 -1.2582 14 6 0.5263 3.0115 -1.0531 15 6 0.0470 3.5415 -2.4060 16 1 -0.5501 2.8141 -2.9560 17 6 -0.6026 4.9300 -2.3251 18 6 0.1444 5.1665 -3.6452 19 7 1.1214 4.1500 -3.2126 20 6 1.5006 3.2751 -4.3301 21 6 0.3023 3.0915 -5.2635 22 6 2.6577 3.9093 -5.1044 23 6 1.9368 1.9131 -3.7862 24 1 -0.3634 -1.0225 0.1022 25 1 -0.3632 0.5998 0.8344 26 1 -0.3633 0.4229 -0.9367 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8151 -0.0563 2.9610 30 1 2.4430 2.5800 -1.6680 31 1 0.8425 3.8461 -0.4273 32 1 -0.2880 2.4779 -0.5628 33 1 -1.6882 4.9211 -2.4221 34 1 -0.2473 5.5413 -1.4955 35 1 0.5681 6.1671 -3.7312 36 1 -0.4260 4.8733 -4.5266 37 1 0.0984 4.0286 -5.7816 38 1 0.5261 2.3138 -5.9936 39 1 -0.5716 2.8014 -4.6801 40 1 3.5114 4.0401 -4.4395 41 1 2.9394 3.2599 -5.9333 42 1 2.3470 4.8796 -5.4919 43 1 1.1392 1.4948 -3.1721 44 1 2.1462 1.2401 -4.6176 45 1 2.8355 2.0343 -3.1815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690287428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:21 Heat of formation + Delta-G solvation = 30.019124 kcal Electronic energy + Delta-G solvation = -20791.517973 eV Core-core repulsion = 18037.893917 eV Total energy + Delta-G solvation = -2753.624056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86284 -37.86518 -35.87177 -34.42631 -32.67184 -29.76290 -28.42621 -28.18350 -27.87702 -26.95642 -24.63622 -22.90407 -21.47906 -20.99476 -19.39903 -18.71664 -17.20086 -16.88677 -16.16036 -15.93876 -15.67118 -15.15734 -14.79922 -14.60062 -14.36315 -14.08800 -13.64524 -13.48121 -13.25428 -13.12351 -13.08474 -12.83163 -12.72905 -12.56959 -12.24714 -12.19623 -12.12859 -11.93469 -11.87417 -11.78467 -11.49508 -11.38246 -11.24316 -10.81244 -10.73310 -10.48187 -9.49500 -8.75443 -8.09121 -6.24523 1.37831 1.39946 1.51189 2.41126 3.12634 3.17071 3.59357 3.78269 3.99465 4.09461 4.23889 4.29345 4.45459 4.52264 4.55865 4.62130 4.73027 4.73815 4.78603 4.84093 4.88418 4.89871 4.97822 5.04343 5.05073 5.11685 5.14313 5.18680 5.23916 5.26508 5.37122 5.39206 5.56411 5.59530 5.60835 5.69877 5.77201 5.91798 6.03327 6.33002 6.42360 6.56377 6.89098 7.13468 7.45803 8.93412 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.006469 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.094251 B = 4327.212908 C = 4801.890398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C 0.219 3.781 4 H -0.030 1.030 5 C -0.540 4.540 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.665 5.665 14 C 0.075 3.925 15 C 0.038 3.962 16 H 0.088 0.912 17 C -0.137 4.137 18 C -0.010 4.010 19 N -0.478 5.478 20 C 0.066 3.934 21 C -0.170 4.170 22 C -0.125 4.125 23 C -0.134 4.134 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.002 0.998 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 6.993 -13.628 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.136 4.136 3 C 0.111 3.889 4 H -0.012 1.012 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.297 5.297 14 C -0.055 4.055 15 C -0.072 4.072 16 H 0.106 0.894 17 C -0.175 4.175 18 C -0.138 4.138 19 N -0.201 5.201 20 C -0.024 4.024 21 C -0.228 4.228 22 C -0.183 4.183 23 C -0.192 4.192 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.020 0.980 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.992 6.557 -13.383 16.911 hybrid contribution 1.022 0.188 0.757 1.286 sum -6.970 6.744 -12.626 15.921 Atomic orbital electron populations 1.21635 0.96743 0.99738 1.00231 1.21331 0.94014 0.98633 0.99595 1.18936 0.92563 0.91576 0.85863 1.01209 1.21844 0.93278 1.37675 1.05049 0.93134 1.25666 1.02272 0.94919 0.95510 1.70034 1.36262 1.39240 1.09793 0.85571 0.80808 0.77754 0.77874 1.19425 1.20772 1.20483 1.61356 1.10210 1.32266 1.25913 1.21922 0.94741 0.93555 0.95300 1.23404 0.92886 0.96333 0.94564 0.89391 1.23195 1.00556 0.95497 0.98271 1.24018 0.94063 0.97816 0.97919 1.69121 1.26984 1.09189 1.14808 1.21542 0.95838 0.93768 0.91253 1.22440 0.98005 1.02511 0.99825 1.21676 0.97158 1.00368 0.99101 1.22128 1.02704 0.94881 0.99481 0.93711 0.95133 0.92372 0.95369 0.92656 0.93008 0.84306 0.97989 0.91935 0.88844 0.90273 0.90120 0.88388 0.90785 0.91611 0.92210 0.93971 0.91695 0.92311 0.90380 0.93455 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.70 71.98 0.63 -4.47 16 2 C -0.10 -4.78 5.45 30.60 0.17 -4.61 16 3 C 0.22 11.25 2.19 44.17 0.10 11.35 16 4 H -0.03 -1.72 7.62 -2.39 -0.02 -1.74 16 5 C -0.54 -30.38 8.60 25.60 0.22 -30.16 16 6 H 0.05 2.84 7.38 -2.91 -0.02 2.82 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -53.60 11.29 21.45 0.24 -53.36 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.66 -27.99 3.00 -495.44 -1.49 -29.47 16 14 C 0.08 2.74 5.20 86.30 0.45 3.19 16 15 C 0.04 1.05 2.39 42.19 0.10 1.15 16 16 H 0.09 2.33 5.59 -2.38 -0.01 2.31 16 17 C -0.14 -3.05 8.00 30.94 0.25 -2.80 16 18 C -0.01 -0.21 7.31 83.58 0.61 0.40 16 19 N -0.48 -13.19 5.49 -852.50 -4.68 -17.88 16 20 C 0.07 1.68 0.74 3.53 0.00 1.68 16 21 C -0.17 -3.36 7.02 71.98 0.51 -2.85 16 22 C -0.13 -3.00 8.70 71.98 0.63 -2.37 16 23 C -0.13 -4.18 6.73 71.98 0.48 -3.70 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.03 1.24 8.11 -2.39 -0.02 1.22 16 26 H 0.06 2.15 7.03 -2.38 -0.02 2.13 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 3.09 5.95 -2.39 -0.01 3.07 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.34 14.92 5.00 -89.70 -0.45 14.47 16 31 H 0.00 0.07 7.85 -2.38 -0.02 0.06 16 32 H 0.06 2.28 6.36 -2.38 -0.02 2.27 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.69 4.83 -2.39 -0.01 1.68 16 37 H 0.07 1.22 6.48 -2.39 -0.02 1.20 16 38 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 39 H 0.06 1.19 5.85 -2.38 -0.01 1.18 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 43 H 0.08 2.67 5.28 -2.38 -0.01 2.65 16 44 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 45 H 0.04 1.51 6.18 -2.39 -0.01 1.50 16 Total: -1.00 -60.09 325.93 1.18 -58.91 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.50 Total: 26.93 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.59 Total: -31.86 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.93 Total: -100.71 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.09 1.18 -58.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690287428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.928 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds