Wall clock time and date at job start Mon Mar 30 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46859 * 2 1 4 4 C 1.53001 * 109.47075 * 119.99909 * 2 1 3 5 5 N 1.46896 * 109.46967 * 239.99713 * 2 1 3 6 6 C 1.47483 * 111.00318 * 53.94125 * 5 2 1 7 7 C 1.53510 * 87.93291 * 138.70121 * 6 5 2 8 8 C 1.47486 * 110.99809 * 149.91201 * 5 2 1 9 9 H 1.08996 * 113.47401 * 336.06276 * 8 5 2 10 10 C 1.52996 * 113.47697 * 106.52790 * 8 5 2 11 11 N 1.46903 * 109.47245 * 302.11823 * 10 8 5 12 12 C 1.46904 * 110.99750 * 173.88467 * 11 10 8 13 13 C 1.53004 * 109.46625 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46529 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46847 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99946 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99999 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00221 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47148 * 120.00629 * 19 17 15 22 22 H 1.48506 * 109.47098 * 240.00125 * 19 17 15 23 23 H 1.08997 * 109.47108 * 60.00294 * 1 2 3 24 24 H 1.08998 * 109.47393 * 300.00130 * 1 2 3 25 25 H 1.09007 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47357 * 49.44070 * 3 2 1 27 27 H 1.08995 * 109.46866 * 169.44173 * 3 2 1 28 28 H 1.08998 * 109.46439 * 289.43580 * 3 2 1 29 29 H 1.09000 * 109.47434 * 68.51019 * 4 2 1 30 30 H 1.08998 * 109.47203 * 188.51859 * 4 2 1 31 31 H 1.09005 * 109.46657 * 308.51293 * 4 2 1 32 32 H 1.08996 * 113.47322 * 253.47116 * 6 5 2 33 33 H 1.09003 * 113.47268 * 23.87258 * 6 5 2 34 34 H 1.08997 * 114.16988 * 87.62798 * 7 6 5 35 35 H 1.09002 * 114.16633 * 220.13847 * 7 6 5 36 36 H 1.09003 * 109.47108 * 62.12005 * 10 8 5 37 37 H 1.08998 * 109.47141 * 182.11152 * 10 8 5 38 38 H 1.00903 * 110.99622 * 297.83755 * 11 10 8 39 39 H 1.09003 * 109.46978 * 299.99535 * 12 11 10 40 40 H 1.08993 * 109.47268 * 59.99996 * 12 11 10 41 41 H 1.09001 * 109.46665 * 299.99820 * 13 12 11 42 42 H 1.08993 * 109.47291 * 60.00023 * 13 12 11 43 43 H 1.09003 * 109.46960 * 299.99477 * 14 13 12 44 44 H 1.08993 * 109.47382 * 59.99998 * 14 13 12 45 45 H 0.96995 * 120.00161 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0197 -0.6925 -1.1994 6 6 1.4318 -0.1129 -2.4215 7 6 2.8134 -0.2381 -3.0787 8 6 3.3191 -0.1453 -1.6322 9 1 3.4926 0.8774 -1.2976 10 6 4.4995 -1.0733 -1.3384 11 7 4.5533 -1.3563 0.1021 12 6 5.5844 -2.3583 0.4035 13 6 5.6107 -2.6256 1.9098 14 6 6.6851 -3.6687 2.2238 15 6 6.7115 -3.9316 3.7075 16 1 6.0298 -3.4075 4.3610 17 6 7.6050 -4.8420 4.2305 18 7 8.4348 -5.4807 3.4347 19 14 7.6382 -5.1674 6.0697 20 1 6.6131 -4.3273 6.7395 21 1 7.3461 -6.6009 6.3242 22 1 8.9815 -4.8329 6.6074 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.5311 2.0079 0.7807 27 1 3.1135 1.4483 0.1883 28 1 1.8386 1.8990 -0.9691 29 1 1.8062 -1.7834 1.1766 30 1 3.1193 -0.5913 1.3287 31 1 1.5578 -0.3027 2.1327 32 1 0.6733 -0.7465 -2.8811 33 1 1.1007 0.9182 -2.2972 34 1 2.9957 -1.2017 -3.5543 35 1 3.0878 0.6102 -3.7058 36 1 4.3735 -2.0064 -1.8876 37 1 5.4265 -0.5914 -1.6490 38 1 4.7051 -0.5107 0.6312 39 1 5.3578 -3.2836 -0.1262 40 1 6.5576 -1.9857 0.0840 41 1 5.8375 -1.7001 2.4391 42 1 4.6376 -2.9981 2.2297 43 1 6.4586 -4.5943 1.6944 44 1 7.6580 -3.2959 1.9039 45 1 9.0632 -6.1214 3.8026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690293529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:15 Heat of formation + Delta-G solvation = 11.812082 kcal Electronic energy + Delta-G solvation = -19681.329791 eV Core-core repulsion = 16926.916219 eV Total energy + Delta-G solvation = -2754.413572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.83874 -37.60185 -35.93263 -35.33548 -33.12730 -29.72544 -28.40693 -28.25469 -27.92024 -26.92647 -24.31574 -22.95889 -22.02797 -21.14115 -19.47444 -18.47564 -17.25940 -16.85216 -16.55663 -16.23844 -15.78003 -15.26655 -15.17089 -14.89884 -14.41621 -14.25130 -13.80175 -13.73520 -13.58607 -13.19286 -13.07979 -12.84094 -12.63347 -12.52229 -12.39258 -12.32065 -12.17742 -11.97132 -11.80255 -11.76353 -11.50074 -11.41256 -11.30668 -11.13912 -10.89115 -10.55871 -9.45759 -9.17055 -8.20062 -6.31094 1.39564 1.40267 1.53857 2.41071 3.02731 3.13018 3.32940 3.66656 3.91377 4.04351 4.15526 4.20146 4.26389 4.32598 4.41971 4.47272 4.52787 4.60742 4.71603 4.74346 4.77036 4.83368 4.89601 4.93983 5.02098 5.03582 5.09531 5.14064 5.16381 5.21240 5.24582 5.27313 5.33192 5.45908 5.52634 5.64523 5.76198 5.85177 5.86919 6.12849 6.28714 6.41886 6.55467 6.86057 7.38207 8.92226 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.032698 B = 0.003866 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.123030 B = 7240.605985 C = 7811.233056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 C -0.173 4.173 4 C -0.128 4.128 5 N -0.463 5.463 6 C -0.006 4.006 7 C -0.134 4.134 8 C 0.019 3.981 9 H 0.101 0.899 10 C 0.075 3.925 11 N -0.671 5.671 12 C 0.074 3.926 13 C -0.088 4.088 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.276 1.276 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.337 0.663 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.049 0.951 42 H 0.049 0.951 43 H -0.012 1.012 44 H -0.009 1.009 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 16.110 -12.008 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 C -0.231 4.231 4 C -0.186 4.186 5 N -0.186 5.186 6 C -0.134 4.134 7 C -0.172 4.172 8 C -0.091 4.091 9 H 0.118 0.882 10 C -0.054 4.054 11 N -0.303 5.303 12 C -0.055 4.055 13 C -0.126 4.126 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.202 1.202 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.009 0.991 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.996 14.815 -11.837 24.176 hybrid contribution 1.247 0.591 0.755 1.573 sum -13.749 15.406 -11.082 23.435 Atomic orbital electron populations 1.21888 0.93723 1.01713 1.02254 1.21453 0.95311 0.92437 0.92674 1.22465 1.01525 0.96460 1.02607 1.21846 1.02594 0.99146 0.94999 1.69209 1.03186 1.45535 1.00635 1.23769 0.97655 0.99808 0.92214 1.23160 0.95740 1.03314 0.94973 1.23758 0.91270 0.98274 0.95754 0.88183 1.21912 0.96089 0.98816 0.88610 1.60710 1.48728 1.13967 1.06911 1.21801 0.92064 0.95555 0.96129 1.21327 0.98551 0.98375 0.94332 1.18979 0.93508 0.93557 0.95250 1.21723 1.18750 1.23212 0.94225 0.92297 1.25998 0.95038 0.95621 1.03264 1.70106 1.22504 1.27837 1.37064 0.85386 0.78252 0.78110 0.79226 1.18594 1.20362 1.20196 0.91771 0.91662 0.93400 0.91492 0.92194 0.91443 0.94666 0.90758 0.93546 0.90221 0.90093 0.89663 0.89004 0.92054 0.94680 0.84338 0.92721 0.96200 0.93192 0.93230 0.99316 0.99105 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.22 71.98 0.59 -1.90 16 2 C 0.07 1.44 0.76 3.53 0.00 1.45 16 3 C -0.17 -2.79 6.97 71.98 0.50 -2.29 16 4 C -0.13 -3.26 8.09 71.98 0.58 -2.68 16 5 N -0.46 -10.03 5.87 -852.48 -5.00 -15.03 16 6 C -0.01 -0.10 6.19 83.58 0.52 0.42 16 7 C -0.13 -2.07 8.00 30.94 0.25 -1.82 16 8 C 0.02 0.37 2.94 42.19 0.12 0.49 16 9 H 0.10 1.71 4.73 -2.39 -0.01 1.70 16 10 C 0.08 1.82 5.79 86.30 0.50 2.32 16 11 N -0.67 -19.28 3.96 -513.88 -2.04 -21.31 16 12 C 0.07 2.64 5.67 86.30 0.49 3.13 16 13 C -0.09 -3.78 5.41 30.60 0.17 -3.61 16 14 C 0.02 1.35 4.97 29.85 0.15 1.50 16 15 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 16 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 18 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 19 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H 0.06 0.97 6.67 -2.39 -0.02 0.95 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 27 H 0.06 1.02 6.59 -2.39 -0.02 1.00 16 28 H 0.07 0.91 5.88 -2.39 -0.01 0.90 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 2.00 4.56 -2.39 -0.01 1.99 16 31 H 0.05 1.08 8.13 -2.38 -0.02 1.06 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.07 5.61 -2.39 -0.01 1.06 16 34 H 0.08 1.45 7.97 -2.39 -0.02 1.43 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.64 7.91 -2.39 -0.02 1.63 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.34 8.97 7.42 -89.69 -0.67 8.31 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -65.49 338.88 0.11 -65.38 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.27 Total: 15.87 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.57 Total: -34.26 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -6.75 Total: -94.30 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.49 0.11 -65.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690293529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.197 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds