Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 H 1.09005 * 109.47341 * 306.41433 * 3 2 1 5 5 C 1.50705 * 109.47244 * 186.41654 * 3 2 1 6 6 H 1.08004 * 119.99926 * 245.36113 * 5 3 2 7 7 C 1.37870 * 119.99998 * 65.35800 * 5 3 2 8 8 N 1.31513 * 120.00306 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00061 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46891 * 59.99683 * 9 7 5 11 11 H 1.48493 * 109.47240 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46705 * 300.00114 * 9 7 5 13 13 N 1.46902 * 109.47484 * 66.41340 * 3 2 1 14 14 C 1.46846 * 111.00175 * 211.18601 * 13 3 2 15 15 H 1.08996 * 109.45864 * 294.17427 * 14 13 3 16 16 C 1.52996 * 109.46400 * 54.15632 * 14 13 3 17 17 C 1.53044 * 109.57115 * 174.19058 * 14 13 3 18 18 H 1.09000 * 109.55698 * 179.05352 * 17 14 13 19 19 C 1.52999 * 109.45539 * 299.17613 * 17 14 13 20 20 C 1.53121 * 109.27479 * 59.08730 * 17 14 13 21 21 C 1.53120 * 109.21141 * 302.43364 * 20 17 14 22 22 C 1.46849 * 110.99624 * 86.97472 * 13 3 2 23 23 H 1.08998 * 109.45547 * 65.83278 * 22 13 3 24 24 C 1.52994 * 109.46391 * 305.85463 * 22 13 3 25 25 N 1.46898 * 109.47352 * 181.30904 * 24 22 13 26 26 H 1.09004 * 109.46916 * 300.00406 * 1 2 3 27 27 H 1.09003 * 109.47013 * 59.99802 * 1 2 3 28 28 H 1.08997 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46969 * 240.00328 * 2 1 3 30 30 H 1.09003 * 109.47313 * 119.99741 * 2 1 3 31 31 H 0.97001 * 120.00036 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47240 * 51.51890 * 16 14 13 33 33 H 1.08995 * 109.47460 * 171.52420 * 16 14 13 34 34 H 1.09002 * 109.47034 * 291.52849 * 16 14 13 35 35 H 1.09004 * 109.47280 * 179.77036 * 19 17 14 36 36 H 1.08999 * 109.47105 * 299.76622 * 19 17 14 37 37 H 1.08992 * 109.46957 * 59.76872 * 19 17 14 38 38 H 1.09001 * 109.52227 * 182.49960 * 20 17 14 39 39 H 1.08997 * 109.52538 * 62.37817 * 20 17 14 40 40 H 1.08995 * 109.50184 * 177.56560 * 21 20 17 41 41 H 1.08997 * 109.50687 * 297.68457 * 21 20 17 42 42 H 1.08999 * 109.47801 * 301.31350 * 24 22 13 43 43 H 1.09002 * 109.47195 * 61.30838 * 24 22 13 44 44 H 1.00906 * 111.00191 * 184.77828 * 25 24 22 45 45 H 1.00906 * 111.00277 * 308.73021 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9885 -0.8270 5 6 3.5387 1.4455 -0.1588 6 1 4.1660 1.8046 0.6437 7 6 4.1088 0.9899 -1.3284 8 7 3.3450 0.5521 -2.3054 9 14 5.9665 0.9929 -1.5250 10 1 6.5770 0.1414 -0.4726 11 1 6.3236 0.4575 -2.8632 12 1 6.4757 2.3818 -1.3949 13 7 1.6808 2.0890 1.2693 14 6 1.4548 3.5278 1.0816 15 1 2.3909 4.0084 0.7977 16 6 0.4169 3.7411 -0.0220 17 6 0.9437 4.1410 2.3874 18 1 0.7920 5.2120 2.2526 19 6 -0.3811 3.4815 2.7759 20 6 1.9756 3.9062 3.4940 21 6 2.2287 2.4028 3.6361 22 6 2.7032 1.8412 2.2938 23 1 3.6334 2.3299 2.0041 24 6 2.9382 0.3352 2.4258 25 7 3.9381 0.0855 3.4725 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7462 0.2318 -3.1285 32 1 -0.4664 3.1380 0.1883 33 1 0.1374 4.7940 -0.0595 34 1 0.8401 3.4431 -0.9813 35 1 -0.7433 3.9152 3.7080 36 1 -1.1152 3.6491 1.9878 37 1 -0.2285 2.4105 2.9086 38 1 1.5961 4.3023 4.4359 39 1 2.9073 4.4097 3.2361 40 1 2.9944 2.2326 4.3929 41 1 1.3057 1.9048 3.9331 42 1 2.0027 -0.1566 2.6923 43 1 3.2992 -0.0608 1.4766 44 1 4.1684 -0.8955 3.5260 45 1 4.7654 0.6434 3.3229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692572404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 2.990044 kcal Electronic energy + Delta-G solvation = -21689.465376 eV Core-core repulsion = 18934.669251 eV Total energy + Delta-G solvation = -2754.796125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.48783 -35.47946 -34.20878 -32.07842 -31.16240 -30.87183 -27.61225 -26.39415 -25.86323 -24.01178 -23.28599 -21.22587 -19.90512 -19.20359 -18.05199 -16.35477 -15.53342 -15.05912 -14.54412 -14.43260 -14.27875 -13.63434 -13.19717 -13.12080 -12.88809 -12.54219 -12.04376 -11.90202 -11.73245 -11.51947 -11.38892 -11.21002 -11.16708 -10.95527 -10.80545 -10.65098 -10.53957 -10.20075 -10.09505 -9.89007 -9.60158 -9.53510 -9.48223 -9.21696 -8.78838 -8.36685 -7.81925 -6.98365 -6.02150 -4.11362 3.22682 3.29296 3.31349 4.35945 4.86319 5.23619 5.29698 5.37107 5.38227 5.59173 5.79945 5.91220 6.00286 6.09549 6.12763 6.21296 6.25735 6.30075 6.39181 6.40871 6.49186 6.51301 6.53726 6.55101 6.68947 6.70206 6.82030 6.85327 6.93232 6.97527 7.02196 7.15692 7.19793 7.21000 7.48227 7.63662 7.75100 7.78903 7.99156 8.02640 8.16110 8.37351 8.60902 8.99926 9.54157 10.99126 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.009479 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.266614 B = 2953.060723 C = 3293.621354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.205 3.795 4 H 0.048 0.952 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.520 5.520 14 C 0.095 3.905 15 H 0.032 0.968 16 C -0.143 4.143 17 C -0.084 4.084 18 H 0.056 0.944 19 C -0.135 4.135 20 C -0.115 4.115 21 C -0.104 4.104 22 C 0.102 3.898 23 H 0.042 0.958 24 C 0.056 3.944 25 N -0.855 5.855 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.022 0.978 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.331 0.669 45 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 3.055 7.840 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.098 3.902 4 H 0.066 0.934 5 C -0.583 4.583 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.245 5.245 14 C -0.014 4.014 15 H 0.050 0.950 16 C -0.200 4.200 17 C -0.102 4.102 18 H 0.075 0.925 19 C -0.192 4.192 20 C -0.153 4.153 21 C -0.142 4.142 22 C -0.007 4.007 23 H 0.060 0.940 24 C -0.074 4.074 25 N -0.383 5.383 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.500 3.054 8.293 9.917 hybrid contribution 2.519 0.047 -1.382 2.873 sum -1.981 3.101 6.911 7.830 Atomic orbital electron populations 1.21706 0.99094 0.98267 1.00409 1.21897 0.92354 0.99600 1.01730 1.19426 0.93305 0.91384 0.86050 0.93403 1.21847 0.93106 1.42613 1.00692 0.91969 1.24914 0.97268 0.95308 0.95920 1.69912 1.34564 1.42238 1.05404 0.86835 0.86703 0.78251 0.77241 1.20507 1.21326 1.20477 1.62299 1.43372 1.08890 1.09976 1.21325 0.96698 0.90100 0.93268 0.94957 1.21935 0.99399 0.99616 0.99077 1.21185 0.95637 0.98151 0.95268 0.92527 1.21750 0.96025 1.02305 0.99138 1.21622 0.98369 0.97602 0.97703 1.21598 1.01080 0.93944 0.97607 1.21294 0.94038 0.94635 0.90770 0.94023 1.22401 0.94713 0.96382 0.93884 1.58886 1.16228 1.11046 1.52179 0.93204 0.94561 0.95858 0.90579 0.93206 0.92951 0.92148 0.93894 0.91868 0.94660 0.93303 0.90952 0.93103 0.93070 0.91930 0.92051 0.91952 0.90546 0.85817 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.81 37.16 0.36 -2.36 16 2 C -0.12 -2.63 5.01 -26.73 -0.13 -2.77 16 3 C 0.20 4.69 1.32 -68.86 -0.09 4.60 16 4 H 0.05 1.23 5.23 -51.93 -0.27 0.96 16 5 C -0.54 -13.65 6.27 -34.44 -0.22 -13.86 16 6 H 0.06 1.57 4.97 -52.48 -0.26 1.31 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.13 11.71 55.43 0.65 -23.48 16 9 Si 0.88 20.59 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.52 -10.20 3.02 -212.25 -0.64 -10.84 16 14 C 0.10 1.76 2.11 -67.72 -0.14 1.62 16 15 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 16 C -0.14 -2.52 8.02 37.16 0.30 -2.22 16 17 C -0.08 -1.31 2.74 -90.54 -0.25 -1.55 16 18 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.14 -1.99 8.38 37.16 0.31 -1.68 16 20 C -0.12 -1.77 5.50 -26.61 -0.15 -1.91 16 21 C -0.10 -1.73 4.84 -26.65 -0.13 -1.86 16 22 C 0.10 1.93 1.42 -67.72 -0.10 1.83 16 23 H 0.04 0.90 5.94 -51.93 -0.31 0.59 16 24 C 0.06 1.04 4.39 -3.83 -0.02 1.03 16 25 N -0.86 -13.72 8.85 -10.37 -0.09 -13.81 16 26 H 0.05 0.95 7.80 -51.93 -0.40 0.55 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.94 6.39 -51.93 -0.33 1.61 16 30 H 0.05 1.09 4.09 -51.93 -0.21 0.87 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 1.04 6.91 -51.93 -0.36 0.68 16 33 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 34 H 0.06 1.26 6.23 -51.93 -0.32 0.93 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.70 6.62 -51.93 -0.34 0.36 16 37 H 0.07 1.18 6.01 -51.93 -0.31 0.87 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.02 7.60 -51.93 -0.39 0.62 16 41 H 0.06 1.04 6.59 -51.93 -0.34 0.70 16 42 H 0.06 1.20 7.47 -51.93 -0.39 0.81 16 43 H 0.08 1.66 4.30 -51.93 -0.22 1.44 16 44 H 0.33 4.77 9.08 -39.29 -0.36 4.42 16 45 H 0.33 5.24 8.93 -39.29 -0.35 4.89 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -25.39 317.14 -8.37 -33.75 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.70 Total: 11.47 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.34 Total: -17.43 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.08 Total: -48.13 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.39 -8.37 -33.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692572404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.743 kcal (2) G-P(sol) polarization free energy of solvation -25.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds