Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 H 1.09005 * 109.47341 * 306.41433 * 3 2 1 5 5 C 1.50705 * 109.47244 * 186.41654 * 3 2 1 6 6 H 1.08004 * 119.99926 * 245.36113 * 5 3 2 7 7 C 1.37870 * 119.99998 * 65.35800 * 5 3 2 8 8 N 1.31513 * 120.00306 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00061 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46891 * 59.99683 * 9 7 5 11 11 H 1.48493 * 109.47240 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46705 * 300.00114 * 9 7 5 13 13 N 1.46902 * 109.47484 * 66.41340 * 3 2 1 14 14 C 1.46846 * 111.00175 * 211.18601 * 13 3 2 15 15 H 1.08996 * 109.45864 * 294.17427 * 14 13 3 16 16 C 1.52996 * 109.46400 * 54.15632 * 14 13 3 17 17 C 1.53044 * 109.57115 * 174.19058 * 14 13 3 18 18 H 1.09000 * 109.55698 * 179.05352 * 17 14 13 19 19 C 1.52999 * 109.45539 * 299.17613 * 17 14 13 20 20 C 1.53121 * 109.27479 * 59.08730 * 17 14 13 21 21 C 1.53120 * 109.21141 * 302.43364 * 20 17 14 22 22 C 1.46849 * 110.99624 * 86.97472 * 13 3 2 23 23 H 1.08998 * 109.45547 * 65.83278 * 22 13 3 24 24 C 1.52994 * 109.46391 * 305.85463 * 22 13 3 25 25 N 1.46898 * 109.47352 * 181.30904 * 24 22 13 26 26 H 1.09004 * 109.46916 * 300.00406 * 1 2 3 27 27 H 1.09003 * 109.47013 * 59.99802 * 1 2 3 28 28 H 1.08997 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46969 * 240.00328 * 2 1 3 30 30 H 1.09003 * 109.47313 * 119.99741 * 2 1 3 31 31 H 0.97001 * 120.00036 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47240 * 51.51890 * 16 14 13 33 33 H 1.08995 * 109.47460 * 171.52420 * 16 14 13 34 34 H 1.09002 * 109.47034 * 291.52849 * 16 14 13 35 35 H 1.09004 * 109.47280 * 179.77036 * 19 17 14 36 36 H 1.08999 * 109.47105 * 299.76622 * 19 17 14 37 37 H 1.08992 * 109.46957 * 59.76872 * 19 17 14 38 38 H 1.09001 * 109.52227 * 182.49960 * 20 17 14 39 39 H 1.08997 * 109.52538 * 62.37817 * 20 17 14 40 40 H 1.08995 * 109.50184 * 177.56560 * 21 20 17 41 41 H 1.08997 * 109.50687 * 297.68457 * 21 20 17 42 42 H 1.08999 * 109.47801 * 301.31350 * 24 22 13 43 43 H 1.09002 * 109.47195 * 61.30838 * 24 22 13 44 44 H 1.00906 * 111.00191 * 184.77828 * 25 24 22 45 45 H 1.00906 * 111.00277 * 308.73021 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9885 -0.8270 5 6 3.5387 1.4455 -0.1588 6 1 4.1660 1.8046 0.6437 7 6 4.1088 0.9899 -1.3284 8 7 3.3450 0.5521 -2.3054 9 14 5.9665 0.9929 -1.5250 10 1 6.5770 0.1414 -0.4726 11 1 6.3236 0.4575 -2.8632 12 1 6.4757 2.3818 -1.3949 13 7 1.6808 2.0890 1.2693 14 6 1.4548 3.5278 1.0816 15 1 2.3909 4.0084 0.7977 16 6 0.4169 3.7411 -0.0220 17 6 0.9437 4.1410 2.3874 18 1 0.7920 5.2120 2.2526 19 6 -0.3811 3.4815 2.7759 20 6 1.9756 3.9062 3.4940 21 6 2.2287 2.4028 3.6361 22 6 2.7032 1.8412 2.2938 23 1 3.6334 2.3299 2.0041 24 6 2.9382 0.3352 2.4258 25 7 3.9381 0.0855 3.4725 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7462 0.2318 -3.1285 32 1 -0.4664 3.1380 0.1883 33 1 0.1374 4.7940 -0.0595 34 1 0.8401 3.4431 -0.9813 35 1 -0.7433 3.9152 3.7080 36 1 -1.1152 3.6491 1.9878 37 1 -0.2285 2.4105 2.9086 38 1 1.5961 4.3023 4.4359 39 1 2.9073 4.4097 3.2361 40 1 2.9944 2.2326 4.3929 41 1 1.3057 1.9048 3.9331 42 1 2.0027 -0.1566 2.6923 43 1 3.2992 -0.0608 1.4766 44 1 4.1684 -0.8955 3.5260 45 1 4.7654 0.6434 3.3229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692572404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = -12.355214 kcal Electronic energy + Delta-G solvation = -21690.130796 eV Core-core repulsion = 18934.669251 eV Total energy + Delta-G solvation = -2755.461545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01515 -37.02794 -35.75134 -33.93981 -32.63197 -32.45619 -29.08255 -28.05512 -27.36941 -25.45209 -25.03033 -22.73601 -21.45033 -20.93718 -19.53563 -18.16830 -17.17612 -16.57571 -16.30175 -15.80252 -15.72474 -15.24392 -14.90671 -14.52991 -14.40084 -14.18871 -13.63511 -13.32312 -13.19407 -13.10880 -12.92679 -12.84929 -12.75619 -12.59228 -12.45799 -12.19754 -12.05280 -11.83166 -11.58645 -11.48710 -11.25699 -11.15874 -10.97469 -10.83793 -10.53520 -10.24846 -9.30111 -8.71836 -8.00514 -6.16740 1.33462 1.36258 1.41287 2.39551 3.20038 3.34411 3.93548 4.04307 4.06338 4.21758 4.37012 4.50499 4.60876 4.65990 4.71394 4.79105 4.81492 4.84374 4.92332 4.95890 4.99057 5.05345 5.14081 5.21144 5.24607 5.32328 5.37000 5.39373 5.44682 5.48030 5.49330 5.55072 5.62702 5.67304 5.75260 5.83060 5.93049 6.15993 6.28871 6.33104 6.52482 6.69051 6.91502 7.07715 7.51502 8.96083 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.009479 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.266614 B = 2953.060723 C = 3293.621354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.212 3.788 4 H 0.019 0.981 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.280 1.280 13 N -0.510 5.510 14 C 0.090 3.910 15 H 0.002 0.998 16 C -0.134 4.134 17 C -0.078 4.078 18 H 0.074 0.926 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.094 4.094 22 C 0.103 3.897 23 H 0.014 0.986 24 C 0.068 3.932 25 N -0.845 5.845 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.257 0.743 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.343 0.657 45 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 3.765 10.021 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.105 3.895 4 H 0.037 0.963 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.761 3.239 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.206 1.206 13 N -0.235 5.235 14 C -0.019 4.019 15 H 0.020 0.980 16 C -0.192 4.192 17 C -0.097 4.097 18 H 0.093 0.907 19 C -0.186 4.186 20 C -0.151 4.151 21 C -0.132 4.132 22 C -0.006 4.006 23 H 0.032 0.968 24 C -0.062 4.062 25 N -0.374 5.374 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.155 0.845 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.142 3.763 10.495 12.278 hybrid contribution 2.733 -0.155 -2.033 3.409 sum -2.409 3.609 8.462 9.510 Atomic orbital electron populations 1.21569 0.96901 0.99403 1.00390 1.21752 0.94243 0.98801 1.00240 1.19192 0.91858 0.91667 0.86803 0.96294 1.22118 0.94462 1.41198 1.00207 0.92388 1.25527 1.00589 0.95612 0.96013 1.70038 1.35771 1.43589 1.05705 0.85994 0.82822 0.78007 0.77054 1.19808 1.21506 1.20587 1.62317 1.43071 1.09657 1.08449 1.21457 0.95746 0.89113 0.95553 0.98023 1.21844 0.98980 1.01252 0.97077 1.21169 0.96204 0.98980 0.93358 0.90744 1.21686 0.95305 1.01226 1.00407 1.21621 0.98135 0.96499 0.98800 1.21495 1.01171 0.94857 0.95670 1.21310 0.92681 0.94675 0.91916 0.96827 1.22111 0.95118 0.96034 0.92977 1.58839 1.15968 1.12057 1.50492 0.92197 0.95440 0.94145 0.94038 0.92653 0.93358 0.91645 0.91351 0.95097 0.92348 0.93016 0.92540 0.90403 0.93759 0.91346 0.91770 0.92126 0.93875 0.84532 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.81 71.98 0.71 -4.20 16 2 C -0.11 -5.12 5.01 30.59 0.15 -4.96 16 3 C 0.21 9.98 1.32 44.17 0.06 10.04 16 4 H 0.02 1.02 5.23 -2.38 -0.01 1.01 16 5 C -0.54 -27.93 6.27 25.60 0.16 -27.77 16 6 H 0.06 3.01 4.97 -2.91 -0.01 2.99 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -51.58 11.71 21.44 0.25 -51.32 16 9 Si 0.93 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.51 -19.98 3.02 -825.41 -2.49 -22.48 16 14 C 0.09 3.30 2.11 44.94 0.09 3.39 16 15 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 16 C -0.13 -4.68 8.02 71.98 0.58 -4.10 16 17 C -0.08 -2.24 2.74 -10.74 -0.03 -2.27 16 18 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 19 C -0.13 -3.36 8.38 71.98 0.60 -2.76 16 20 C -0.11 -3.13 5.50 30.67 0.17 -2.96 16 21 C -0.09 -2.90 4.84 30.65 0.15 -2.75 16 22 C 0.10 3.86 1.42 44.94 0.06 3.92 16 23 H 0.01 0.60 5.94 -2.39 -0.01 0.59 16 24 C 0.07 2.51 4.39 86.30 0.38 2.89 16 25 N -0.84 -25.91 8.85 -186.73 -1.65 -27.56 16 26 H 0.06 2.21 7.80 -2.38 -0.02 2.19 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 2.18 6.39 -2.39 -0.02 2.17 16 30 H 0.06 2.44 4.09 -2.39 -0.01 2.43 16 31 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.06 2.19 6.91 -2.39 -0.02 2.18 16 33 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.03 1.26 6.23 -2.39 -0.01 1.24 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.31 6.62 -2.39 -0.02 1.30 16 37 H 0.06 1.66 6.01 -2.39 -0.01 1.65 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 2.05 7.60 -2.39 -0.02 2.03 16 41 H 0.06 1.98 6.59 -2.39 -0.02 1.96 16 42 H 0.06 2.27 7.47 -2.39 -0.02 2.25 16 43 H 0.04 1.90 4.30 -2.39 -0.01 1.89 16 44 H 0.34 9.33 9.08 -89.69 -0.81 8.52 16 45 H 0.33 10.17 8.93 -89.69 -0.80 9.37 16 Total: -1.00 -55.66 317.14 1.03 -54.62 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.63 Total: 31.49 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 3.53 Total: -29.91 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -3.90 Total: -101.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -55.66 1.03 -54.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692572404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.268 kcal (2) G-P(sol) polarization free energy of solvation -55.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds