Wall clock time and date at job start Mon Mar 30 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.48529 * 111.00334 * 52.60118 * 4 3 2 6 6 C 1.54939 * 103.22773 * 159.72019 * 5 4 3 7 7 C 1.54592 * 102.92065 * 322.58285 * 6 5 4 8 8 H 1.08994 * 110.39946 * 262.99593 * 7 6 5 9 9 C 1.53004 * 110.30576 * 140.87481 * 7 6 5 10 10 N 1.46896 * 109.47579 * 69.28497 * 9 7 6 11 11 C 1.46892 * 111.00571 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47064 * 34.99886 * 11 10 9 13 13 C 1.53000 * 109.47007 * 275.00057 * 11 10 9 14 14 C 1.52999 * 109.47439 * 154.99991 * 11 10 9 15 15 C 1.50700 * 109.47160 * 294.99936 * 14 11 10 16 16 H 1.08007 * 119.99579 * 0.02562 * 15 14 11 17 17 C 1.37874 * 120.00144 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99806 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00061 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46729 * 119.99912 * 19 17 15 22 22 H 1.48497 * 109.46925 * 239.99908 * 19 17 15 23 23 C 1.47907 * 110.99770 * 169.99935 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.09002 * 110.66801 * 278.15661 * 5 4 3 32 32 H 1.09002 * 110.66763 * 41.28631 * 5 4 3 33 33 H 1.09000 * 110.72440 * 204.22727 * 6 5 4 34 34 H 1.08995 * 110.87785 * 81.01904 * 6 5 4 35 35 H 1.09001 * 109.47345 * 189.29045 * 9 7 6 36 36 H 1.09001 * 109.47021 * 309.28477 * 9 7 6 37 37 H 1.00907 * 110.99795 * 56.04107 * 10 9 7 38 38 H 1.09000 * 109.47413 * 59.99994 * 13 11 10 39 39 H 1.09000 * 109.46989 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47070 * 299.99826 * 13 11 10 41 41 H 1.09002 * 109.47251 * 55.00182 * 14 11 10 42 42 H 1.09003 * 109.47001 * 174.99833 * 14 11 10 43 43 H 0.97001 * 119.99948 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.91438 * 333.50218 * 23 4 3 45 45 H 1.09000 * 109.91768 * 94.60586 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0408 0.6004 -1.1025 6 6 5.4886 1.1226 -1.2807 7 6 5.3378 2.6442 -1.0525 8 1 5.2535 3.1649 -2.0062 9 6 6.5295 3.1826 -0.2581 10 7 7.7371 3.1334 -1.0931 11 6 8.9043 3.6434 -0.3614 12 1 8.8226 3.3682 0.6901 13 6 8.9591 5.1672 -0.4870 14 6 10.1799 3.0370 -0.9497 15 6 10.1823 1.5482 -0.7162 16 1 9.3563 1.0812 -0.2003 17 6 11.2384 0.7821 -1.1622 18 7 12.2434 1.3507 -1.7918 19 14 11.2410 -1.0635 -0.8734 20 1 10.0049 -1.4528 -0.1485 21 1 11.2926 -1.7686 -2.1793 22 1 12.4280 -1.4358 -0.0625 23 6 4.0389 2.8023 -0.2404 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.0437 -0.4513 -0.8161 32 1 3.4629 0.7502 -2.0145 33 1 5.8514 0.9178 -2.2879 34 1 6.1538 0.6849 -0.5364 35 1 6.3336 4.2134 0.0370 36 1 6.6784 2.5719 0.6323 37 1 7.6012 3.6393 -1.9556 38 1 8.0504 5.5993 -0.0679 39 1 9.8249 5.5456 0.0563 40 1 9.0408 5.4424 -1.5385 41 1 10.2169 3.2369 -2.0206 42 1 11.0499 3.4819 -0.4667 43 1 12.9865 0.8118 -2.1052 44 1 3.3155 3.3880 -0.8076 45 1 4.2492 3.2919 0.7104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695780539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:44 Heat of formation + Delta-G solvation = -19.256724 kcal Electronic energy + Delta-G solvation = -19317.470508 eV Core-core repulsion = 16561.709691 eV Total energy + Delta-G solvation = -2755.760817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.27833 -36.73337 -34.72867 -32.72122 -31.56193 -29.75274 -28.54847 -27.18920 -25.64081 -23.56537 -22.63270 -22.22394 -20.44418 -20.13583 -19.27611 -16.19035 -16.09737 -15.83486 -15.14110 -14.51531 -14.43848 -14.19873 -14.03628 -13.52526 -13.40886 -12.88689 -12.58599 -12.31178 -12.18330 -11.98930 -11.76636 -11.55769 -11.41339 -11.30977 -11.07529 -11.04643 -10.89081 -10.76211 -10.58002 -10.49051 -10.35041 -10.17432 -9.97983 -9.19390 -8.89798 -8.42712 -8.20310 -7.47051 -5.82372 -3.79333 3.42149 3.49379 3.55219 3.95404 4.52394 4.61913 4.77400 4.79354 4.90029 5.00033 5.11477 5.29164 5.30202 5.39526 5.48777 5.52047 5.55230 5.57642 5.69169 5.74208 5.78310 5.78716 5.91484 5.93178 5.97575 6.05602 6.06992 6.09165 6.16866 6.25728 6.46730 6.52868 6.61972 6.68472 6.94379 7.04916 7.09370 7.63496 7.75940 8.09630 8.13660 8.25026 8.67059 9.26497 9.81759 11.29952 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.004571 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.061090 B = 6124.277720 C = 7244.267372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.047 3.953 4 N -0.518 5.518 5 C 0.031 3.969 6 C -0.104 4.104 7 C -0.093 4.093 8 H 0.069 0.931 9 C 0.072 3.928 10 N -0.662 5.662 11 C 0.090 3.910 12 H 0.063 0.937 13 C -0.179 4.179 14 C 0.032 3.968 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.048 3.952 18 N -0.906 5.906 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.042 3.958 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.015 0.985 36 H 0.072 0.928 37 H 0.328 0.672 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.256 0.744 44 H 0.039 0.961 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.473 2.287 2.003 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.081 4.081 4 N -0.242 5.242 5 C -0.096 4.096 6 C -0.142 4.142 7 C -0.113 4.113 8 H 0.087 0.913 9 C -0.058 4.058 10 N -0.292 5.292 11 C -0.020 4.020 12 H 0.081 0.919 13 C -0.239 4.239 14 C -0.005 4.005 15 C -0.522 4.522 16 H 0.077 0.923 17 C -0.151 4.151 18 N -0.547 5.547 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.086 4.086 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.026 1.384 2.597 20.241 hybrid contribution -0.413 0.345 -0.730 0.907 sum -20.439 1.728 1.867 20.597 Atomic orbital electron populations 1.21736 0.95739 1.01695 1.01661 1.21598 0.95436 0.96493 1.02830 1.22331 0.88198 0.97102 1.00508 1.64802 1.07086 1.08612 1.43671 1.23313 0.96004 0.98299 0.91991 1.22419 0.94842 0.93905 1.03042 1.21973 0.93631 0.97486 0.98192 0.91281 1.22013 0.89718 0.97479 0.96615 1.60504 1.02027 1.60421 1.06235 1.21773 0.92867 0.89660 0.97673 0.91869 1.22555 1.00432 0.99630 1.01240 1.19119 0.89541 0.95781 0.96045 1.21193 1.03744 0.92404 1.34844 0.92274 1.25009 0.95952 0.98150 0.95958 1.69979 1.09310 1.35141 1.40286 0.86594 0.77664 0.86432 0.77641 1.19775 1.21371 1.21492 1.22904 0.95592 0.90278 0.99853 0.92967 0.92582 0.92703 0.91829 0.91083 0.95086 0.90956 0.90242 0.94300 0.90822 0.89819 0.96686 0.90990 0.85477 0.94500 0.92572 0.93129 0.96589 0.96598 0.93485 0.94272 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.14 5.59 -26.73 -0.15 -1.29 16 3 C 0.05 0.48 5.03 -3.82 -0.02 0.46 16 4 N -0.52 -6.38 5.40 -230.45 -1.24 -7.62 16 5 C 0.03 0.39 5.10 -1.90 -0.01 0.38 16 6 C -0.10 -1.50 6.48 -24.87 -0.16 -1.66 16 7 C -0.09 -1.26 3.16 -89.26 -0.28 -1.54 16 8 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.07 1.11 4.58 -3.82 -0.02 1.09 16 10 N -0.66 -12.23 5.83 -106.73 -0.62 -12.85 16 11 C 0.09 1.82 2.53 -67.72 -0.17 1.65 16 12 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 13 C -0.18 -3.06 9.16 37.16 0.34 -2.72 16 14 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 15 C -0.48 -13.74 8.84 -34.44 -0.30 -14.05 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 17 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 18 N -0.91 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C 0.04 0.51 6.35 -2.75 -0.02 0.49 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.31 7.81 -51.93 -0.41 -0.10 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 32 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.41 7.76 -51.93 -0.40 1.01 16 35 H 0.02 0.22 7.44 -51.93 -0.39 -0.17 16 36 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 37 H 0.33 5.69 8.47 -39.29 -0.33 5.35 16 38 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 45 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -30.07 350.17 -10.40 -40.48 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.88 Total: 0.33 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.65 Total: -15.91 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.13 Total: -47.53 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.07 -10.40 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695780539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.221 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds