Wall clock time and date at job start Mon Mar 30 2020 06:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.48529 * 111.00334 * 52.60118 * 4 3 2 6 6 C 1.54939 * 103.22773 * 159.72019 * 5 4 3 7 7 C 1.54592 * 102.92065 * 322.58285 * 6 5 4 8 8 H 1.08994 * 110.39946 * 262.99593 * 7 6 5 9 9 C 1.53004 * 110.30576 * 140.87481 * 7 6 5 10 10 N 1.46896 * 109.47579 * 69.28497 * 9 7 6 11 11 C 1.46892 * 111.00571 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47064 * 34.99886 * 11 10 9 13 13 C 1.53000 * 109.47007 * 275.00057 * 11 10 9 14 14 C 1.52999 * 109.47439 * 154.99991 * 11 10 9 15 15 C 1.50700 * 109.47160 * 294.99936 * 14 11 10 16 16 H 1.08007 * 119.99579 * 0.02562 * 15 14 11 17 17 C 1.37874 * 120.00144 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99806 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00061 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46729 * 119.99912 * 19 17 15 22 22 H 1.48497 * 109.46925 * 239.99908 * 19 17 15 23 23 C 1.47907 * 110.99770 * 169.99935 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.09002 * 110.66801 * 278.15661 * 5 4 3 32 32 H 1.09002 * 110.66763 * 41.28631 * 5 4 3 33 33 H 1.09000 * 110.72440 * 204.22727 * 6 5 4 34 34 H 1.08995 * 110.87785 * 81.01904 * 6 5 4 35 35 H 1.09001 * 109.47345 * 189.29045 * 9 7 6 36 36 H 1.09001 * 109.47021 * 309.28477 * 9 7 6 37 37 H 1.00907 * 110.99795 * 56.04107 * 10 9 7 38 38 H 1.09000 * 109.47413 * 59.99994 * 13 11 10 39 39 H 1.09000 * 109.46989 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47070 * 299.99826 * 13 11 10 41 41 H 1.09002 * 109.47251 * 55.00182 * 14 11 10 42 42 H 1.09003 * 109.47001 * 174.99833 * 14 11 10 43 43 H 0.97001 * 119.99948 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.91438 * 333.50218 * 23 4 3 45 45 H 1.09000 * 109.91768 * 94.60586 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0408 0.6004 -1.1025 6 6 5.4886 1.1226 -1.2807 7 6 5.3378 2.6442 -1.0525 8 1 5.2535 3.1649 -2.0062 9 6 6.5295 3.1826 -0.2581 10 7 7.7371 3.1334 -1.0931 11 6 8.9043 3.6434 -0.3614 12 1 8.8226 3.3682 0.6901 13 6 8.9591 5.1672 -0.4870 14 6 10.1799 3.0370 -0.9497 15 6 10.1823 1.5482 -0.7162 16 1 9.3563 1.0812 -0.2003 17 6 11.2384 0.7821 -1.1622 18 7 12.2434 1.3507 -1.7918 19 14 11.2410 -1.0635 -0.8734 20 1 10.0049 -1.4528 -0.1485 21 1 11.2926 -1.7686 -2.1793 22 1 12.4280 -1.4358 -0.0625 23 6 4.0389 2.8023 -0.2404 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.0437 -0.4513 -0.8161 32 1 3.4629 0.7502 -2.0145 33 1 5.8514 0.9178 -2.2879 34 1 6.1538 0.6849 -0.5364 35 1 6.3336 4.2134 0.0370 36 1 6.6784 2.5719 0.6323 37 1 7.6012 3.6393 -1.9556 38 1 8.0504 5.5993 -0.0679 39 1 9.8249 5.5456 0.0563 40 1 9.0408 5.4424 -1.5385 41 1 10.2169 3.2369 -2.0206 42 1 11.0499 3.4819 -0.4667 43 1 12.9865 0.8118 -2.1052 44 1 3.3155 3.3880 -0.8076 45 1 4.2492 3.2919 0.7104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695780539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:43 Heat of formation + Delta-G solvation = -38.683645 kcal Electronic energy + Delta-G solvation = -19318.312923 eV Core-core repulsion = 16561.709691 eV Total energy + Delta-G solvation = -2756.603231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29464 -38.19687 -35.77639 -34.65133 -32.86740 -30.92157 -29.81125 -29.01562 -26.53398 -25.19071 -24.23311 -23.09145 -21.64728 -21.25164 -20.65001 -18.35922 -17.09087 -16.91805 -16.47944 -16.10076 -15.80767 -15.58945 -15.14038 -14.63171 -14.30501 -14.23886 -13.99815 -13.73933 -13.44954 -13.19903 -13.10156 -12.95003 -12.79022 -12.59868 -12.49230 -12.35535 -12.15197 -11.98979 -11.95547 -11.74534 -11.62103 -11.49233 -11.45164 -11.06329 -10.99605 -10.47406 -9.33086 -8.93260 -8.08042 -6.12210 1.41391 1.42234 1.55653 2.48787 3.06696 3.23210 3.36586 3.78439 3.83967 3.98586 4.11439 4.18567 4.28374 4.36883 4.44038 4.46893 4.50387 4.57758 4.63837 4.66625 4.69711 4.79099 4.81442 4.88764 4.97230 4.98241 5.01712 5.15085 5.19171 5.24100 5.28695 5.31590 5.32461 5.39904 5.44958 5.53692 5.71259 5.92528 5.97609 6.17727 6.36928 6.53427 6.79489 7.02180 7.53267 9.04423 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.004571 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.061090 B = 6124.277720 C = 7244.267372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.048 3.952 4 N -0.534 5.534 5 C 0.041 3.959 6 C -0.106 4.106 7 C -0.087 4.087 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.679 5.679 11 C 0.100 3.900 12 H 0.054 0.946 13 C -0.169 4.169 14 C 0.037 3.963 15 C -0.493 4.493 16 H 0.054 0.946 17 C -0.007 4.007 18 N -0.942 5.942 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.047 3.953 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.335 0.665 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.053 0.947 41 H -0.009 1.009 42 H -0.010 1.010 43 H 0.258 0.742 44 H 0.056 0.944 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.682 2.338 2.200 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.080 4.080 4 N -0.258 5.258 5 C -0.087 4.087 6 C -0.145 4.145 7 C -0.107 4.107 8 H 0.098 0.902 9 C -0.050 4.050 10 N -0.310 5.310 11 C -0.010 4.010 12 H 0.072 0.928 13 C -0.228 4.228 14 C 0.000 4.000 15 C -0.532 4.532 16 H 0.073 0.927 17 C -0.203 4.203 18 N -0.585 5.585 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.081 4.081 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.257 1.440 2.800 22.478 hybrid contribution 0.277 0.335 -0.786 0.899 sum -21.980 1.775 2.014 22.143 Atomic orbital electron populations 1.21705 0.94321 1.02270 1.02150 1.21572 0.96641 0.95738 1.02188 1.22384 0.86739 0.97844 1.01053 1.64794 1.08624 1.08691 1.43727 1.23202 0.94548 0.98266 0.92643 1.22341 0.95759 0.94896 1.01470 1.21925 0.93569 0.96534 0.98643 0.90227 1.21949 0.89066 0.98260 0.95704 1.60319 1.02674 1.61004 1.06959 1.21421 0.91224 0.91742 0.96601 0.92781 1.22403 1.01810 0.96788 1.01754 1.19007 0.91677 0.94912 0.94437 1.21496 1.03431 0.93909 1.34322 0.92733 1.25853 0.95660 1.02975 0.95810 1.70102 1.10026 1.36952 1.41384 0.85538 0.77922 0.80702 0.77708 1.19086 1.20816 1.20811 1.22850 0.94959 0.90470 0.99812 0.92457 0.92018 0.92217 0.92178 0.92038 0.94393 0.90417 0.90301 0.93090 0.91638 0.92887 0.94793 0.92940 0.84656 0.91699 0.92695 0.92788 0.99073 0.99159 0.93334 0.92581 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -2.02 5.59 30.59 0.17 -1.85 16 3 C 0.05 0.86 5.03 86.30 0.43 1.29 16 4 N -0.53 -12.20 5.40 -883.00 -4.76 -16.97 16 5 C 0.04 0.96 5.10 86.65 0.44 1.40 16 6 C -0.11 -3.03 6.48 31.80 0.21 -2.83 16 7 C -0.09 -2.22 3.16 -9.91 -0.03 -2.25 16 8 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.08 2.37 4.58 86.31 0.39 2.76 16 10 N -0.68 -24.80 5.83 -491.59 -2.86 -27.66 16 11 C 0.10 4.07 2.53 44.92 0.11 4.18 16 12 H 0.05 2.28 7.80 -2.39 -0.02 2.27 16 13 C -0.17 -5.51 9.16 71.98 0.66 -4.85 16 14 C 0.04 1.97 4.65 29.85 0.14 2.11 16 15 C -0.49 -28.62 8.84 25.60 0.23 -28.39 16 16 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 17 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 18 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 19 Si 0.96 46.45 29.54 68.60 2.03 48.48 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 C 0.05 1.03 6.35 86.45 0.55 1.58 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 1.01 6.79 -2.39 -0.02 1.00 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.64 7.81 -2.39 -0.02 0.62 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.84 7.66 -2.39 -0.02 1.82 16 32 H 0.05 1.07 8.00 -2.39 -0.02 1.05 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.82 7.76 -2.39 -0.02 1.80 16 35 H 0.03 0.90 7.44 -2.39 -0.02 0.88 16 36 H 0.05 1.77 7.91 -2.39 -0.02 1.75 16 37 H 0.34 11.33 8.47 -89.69 -0.76 10.57 16 38 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.06 1.05 7.57 -2.39 -0.02 1.03 16 45 H 0.08 1.71 7.69 -2.39 -0.02 1.69 16 Total: -1.00 -64.92 350.17 -0.68 -65.61 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.15 Total: 17.11 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.48 Total: -27.95 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -7.34 Total: -103.25 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -64.92 -0.68 -65.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695780539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.921 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds