Wall clock time and date at job start Mon Mar 30 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47058 * 2 1 4 4 H 1.09000 * 109.47309 * 57.26209 * 3 2 1 5 5 C 1.50702 * 109.46704 * 177.25392 * 3 2 1 6 6 H 1.08005 * 120.00131 * 86.06667 * 5 3 2 7 7 C 1.37874 * 120.00426 * 266.06482 * 5 3 2 8 8 N 1.31521 * 119.99877 * 6.71232 * 7 5 3 9 9 Si 1.86802 * 120.00438 * 186.71477 * 7 5 3 10 10 H 1.48497 * 109.47212 * 175.00028 * 9 7 5 11 11 H 1.48498 * 109.47080 * 295.00089 * 9 7 5 12 12 H 1.48507 * 109.46994 * 55.00063 * 9 7 5 13 13 N 1.46895 * 109.47527 * 297.25008 * 3 2 1 14 14 C 1.46846 * 111.00481 * 301.49574 * 13 3 2 15 15 C 1.53038 * 109.52363 * 174.15502 * 14 13 3 16 16 C 1.53119 * 109.27717 * 59.18065 * 15 14 13 17 17 C 1.53112 * 109.16236 * 302.34603 * 16 15 14 18 18 C 1.46844 * 111.00178 * 177.28166 * 13 3 2 19 19 H 1.09001 * 109.46553 * 65.82720 * 18 13 3 20 20 C 1.52996 * 109.46390 * 305.85852 * 18 13 3 21 21 C 1.53003 * 109.47347 * 176.49628 * 20 18 13 22 22 C 1.53002 * 109.47202 * 184.35073 * 21 20 18 23 23 N 1.46904 * 109.47001 * 184.90082 * 22 21 20 24 24 H 1.08996 * 109.47447 * 185.01518 * 1 2 3 25 25 H 1.09000 * 109.46914 * 305.01880 * 1 2 3 26 26 H 1.09003 * 109.47194 * 65.01516 * 1 2 3 27 27 H 1.09006 * 109.46556 * 240.00608 * 2 1 3 28 28 H 1.08997 * 109.46973 * 120.00744 * 2 1 3 29 29 H 0.97000 * 119.99421 * 5.54265 * 8 7 5 30 30 H 1.08996 * 109.46157 * 294.17289 * 14 13 3 31 31 H 1.09003 * 109.46191 * 54.14225 * 14 13 3 32 32 H 1.09007 * 109.50344 * 179.12180 * 15 14 13 33 33 H 1.08999 * 109.50625 * 299.23816 * 15 14 13 34 34 H 1.09005 * 109.52322 * 62.25341 * 16 15 14 35 35 H 1.09000 * 109.52239 * 182.43578 * 16 15 14 36 36 H 1.09004 * 109.50790 * 177.59972 * 17 16 15 37 37 H 1.09013 * 109.50268 * 297.67301 * 17 16 15 38 38 H 1.09003 * 109.47450 * 296.49857 * 20 18 13 39 39 H 1.09002 * 109.46962 * 56.49925 * 20 18 13 40 40 H 1.09002 * 109.46745 * 304.34729 * 21 20 18 41 41 H 1.08994 * 109.47020 * 64.34709 * 21 20 18 42 42 H 1.08996 * 109.46982 * 304.90479 * 22 21 20 43 43 H 1.09002 * 109.47252 * 64.90339 * 22 21 20 44 44 H 1.00902 * 111.00009 * 61.24793 * 23 22 21 45 45 H 1.00897 * 110.99824 * 185.19928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6371 1.9703 0.8644 5 6 3.5455 1.4429 0.0681 6 1 4.1271 1.3640 -0.8386 7 6 4.1805 1.5441 1.2877 8 7 3.4787 1.5072 2.3995 9 14 6.0374 1.7336 1.3612 10 1 6.4584 1.9416 2.7700 11 1 6.6817 0.5064 0.8281 12 1 6.4483 2.9034 0.5439 13 7 1.6054 2.1156 -1.2312 14 6 2.1013 1.4102 -2.4199 15 6 1.5115 2.0513 -3.6781 16 6 1.9168 3.5269 -3.7312 17 6 1.4306 4.2277 -2.4597 18 6 2.0226 3.5235 -1.2367 19 1 3.1104 3.5798 -1.2764 20 6 1.5232 4.2081 0.0371 21 6 2.0314 5.6508 0.0736 22 6 1.6238 6.3019 1.3969 23 7 2.0085 7.7196 1.3840 24 1 -0.3634 -1.0237 0.0898 25 1 -0.3633 0.5897 0.8416 26 1 -0.3634 0.4341 -0.9315 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.5259 1.3285 2.3658 30 1 3.1887 1.4764 -2.4541 31 1 1.8026 0.3630 -2.3717 32 1 1.8920 1.5374 -4.5610 33 1 0.4246 1.9732 -3.6512 34 1 3.0021 3.6044 -3.7975 35 1 1.4632 3.9981 -4.6031 36 1 1.7531 5.2688 -2.4718 37 1 0.3423 4.1845 -2.4138 38 1 0.4332 4.2066 0.0471 39 1 1.8953 3.6697 0.9088 40 1 3.1179 5.6555 -0.0141 41 1 1.5975 6.2099 -0.7553 42 1 0.5445 6.2193 1.5251 43 1 2.1273 5.7963 2.2209 44 1 1.5388 8.2150 0.6409 45 1 1.8271 8.1516 2.2776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710393834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:59 Heat of formation + Delta-G solvation = -28.604236 kcal Electronic energy + Delta-G solvation = -20853.665289 eV Core-core repulsion = 18097.499134 eV Total energy + Delta-G solvation = -2756.166155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.93598 -35.66262 -34.79844 -32.54237 -31.91565 -30.54344 -28.80528 -26.14639 -24.62287 -23.57433 -22.73872 -21.33956 -20.10446 -19.71651 -18.82146 -16.58127 -15.86113 -15.35244 -14.75562 -14.36644 -14.10057 -13.75415 -13.63033 -13.52067 -13.29990 -12.92521 -12.61596 -12.25786 -11.92573 -11.76094 -11.43401 -10.96218 -10.93444 -10.87513 -10.82635 -10.58739 -10.33073 -10.27912 -10.23906 -10.05187 -9.91088 -9.83361 -9.35643 -9.17257 -8.80936 -8.57235 -8.34323 -6.94175 -6.31449 -4.07533 3.42556 3.45055 3.62377 4.52997 4.65509 4.99463 5.31059 5.35839 5.37478 5.43203 5.47647 5.54935 5.79696 5.87996 6.03337 6.06125 6.09473 6.14059 6.17048 6.19284 6.29424 6.37141 6.40374 6.42146 6.46334 6.51813 6.57749 6.69908 6.72309 6.85027 6.87112 6.91026 7.03917 7.15432 7.17406 7.25391 7.37413 7.44999 7.52673 8.05719 8.24429 8.42373 8.58619 8.85329 9.65152 11.01993 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.010600 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.852673 B = 2640.884202 C = 3810.323410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.190 3.810 4 H 0.054 0.946 5 C -0.616 4.616 6 H 0.048 0.952 7 C 0.031 3.969 8 N -0.908 5.908 9 Si 1.054 2.946 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.527 5.527 14 C 0.059 3.941 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.112 4.112 18 C 0.103 3.897 19 H 0.047 0.953 20 C -0.109 4.109 21 C -0.110 4.110 22 C 0.061 3.939 23 N -0.852 5.852 24 H 0.027 0.973 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.270 0.730 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.074 0.926 44 H 0.335 0.665 45 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 5.997 -6.724 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.071 0.929 5 C -0.656 4.656 6 H 0.066 0.934 7 C -0.175 4.175 8 N -0.543 5.543 9 Si 0.883 3.117 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.251 5.251 14 C -0.070 4.070 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.006 4.006 19 H 0.064 0.936 20 C -0.147 4.147 21 C -0.148 4.148 22 C -0.070 4.070 23 N -0.381 5.381 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.092 0.908 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.895 5.932 -5.817 9.176 hybrid contribution -1.278 -0.162 -0.864 1.551 sum -5.173 5.770 -6.681 10.232 Atomic orbital electron populations 1.21724 0.98068 0.98673 1.01264 1.21750 0.93115 0.99848 1.00179 1.19559 0.93631 0.89992 0.88486 0.92864 1.22432 0.92437 1.55553 0.95134 0.93417 1.25609 1.06103 0.93504 0.92259 1.70810 1.09594 1.45224 1.28722 0.83753 0.75412 0.76480 0.76031 1.20808 1.21673 1.21509 1.62423 1.58687 1.01013 1.02966 1.21912 0.97524 0.97662 0.89899 1.21612 1.00818 0.95415 0.97510 1.21533 1.00419 0.96122 0.97399 1.21700 1.00516 0.98099 0.94668 1.21225 0.97759 0.88907 0.92748 0.93553 1.21578 0.99541 0.94114 0.99501 1.21528 1.01802 0.95822 0.95663 1.21840 0.97272 0.88238 0.99603 1.58711 1.66752 1.03761 1.08867 0.95347 0.93980 0.92791 0.93698 0.93135 0.91862 0.94812 0.91626 0.92989 0.92119 0.92683 0.93117 0.92571 0.92234 0.93016 0.90113 0.91479 0.92866 0.95990 0.90764 0.85347 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.71 37.16 0.36 -2.30 16 2 C -0.11 -2.44 5.10 -26.73 -0.14 -2.58 16 3 C 0.19 4.45 1.08 -68.87 -0.07 4.37 16 4 H 0.05 1.37 4.52 -51.93 -0.23 1.13 16 5 C -0.62 -16.21 6.81 -34.44 -0.23 -16.44 16 6 H 0.05 1.30 6.21 -52.48 -0.33 0.97 16 7 C 0.03 0.84 5.45 -17.82 -0.10 0.75 16 8 N -0.91 -26.06 13.55 55.43 0.75 -25.31 16 9 Si 1.05 24.99 29.91 -169.99 -5.08 19.91 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -10.83 3.94 -220.15 -0.87 -11.69 16 14 C 0.06 1.13 4.80 -3.83 -0.02 1.11 16 15 C -0.12 -1.83 6.09 -26.65 -0.16 -2.00 16 16 C -0.12 -1.78 6.00 -26.61 -0.16 -1.94 16 17 C -0.11 -1.81 5.07 -26.65 -0.14 -1.95 16 18 C 0.10 2.00 1.56 -67.73 -0.11 1.89 16 19 H 0.05 1.05 7.38 -51.93 -0.38 0.67 16 20 C -0.11 -2.07 4.40 -26.73 -0.12 -2.18 16 21 C -0.11 -1.81 5.13 -26.73 -0.14 -1.95 16 22 C 0.06 0.92 6.77 -3.82 -0.03 0.90 16 23 N -0.85 -11.04 9.60 -10.37 -0.10 -11.14 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.00 7.83 -51.93 -0.41 0.59 16 27 H 0.04 0.98 6.11 -51.93 -0.32 0.66 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.27 7.72 6.79 -40.82 -0.28 7.44 16 30 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 31 H 0.07 1.28 5.91 -51.93 -0.31 0.97 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.84 6.66 -51.93 -0.35 0.49 16 37 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.83 6.06 -51.93 -0.31 1.52 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.79 6.76 -51.93 -0.35 0.44 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.33 3.71 9.05 -39.29 -0.36 3.36 16 45 H 0.34 3.69 9.08 -39.29 -0.36 3.33 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -27.61 332.84 -9.51 -37.12 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.18 Total: 8.41 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.04 Total: -22.31 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.22 Total: -48.15 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.61 -9.51 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710393834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.515 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds